Wall clock time and date at job start Sun Mar 29 2020 21:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47310 * 2 1 4 4 H 1.09002 * 109.47019 * 178.18512 * 3 2 1 5 5 N 1.46901 * 109.46944 * 58.19137 * 3 2 1 6 6 C 1.46894 * 111.00231 * 86.02280 * 5 3 2 7 7 C 1.52994 * 109.47378 * 175.84327 * 6 5 3 8 8 C 1.50697 * 109.47569 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00027 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00352 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99910 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46980 * 90.00060 * 12 10 8 14 14 H 1.48498 * 109.47593 * 209.99611 * 12 10 8 15 15 H 1.48498 * 109.47315 * 330.00236 * 12 10 8 16 16 C 1.52996 * 109.47147 * 298.18976 * 3 2 1 17 17 H 1.09003 * 110.80407 * 56.37524 * 16 3 2 18 18 C 1.54812 * 110.90820 * 179.97438 * 16 3 2 19 19 C 1.54096 * 104.18846 * 139.11293 * 18 16 3 20 20 O 1.43745 * 107.29296 * 2.03369 * 19 18 16 21 21 C 1.44377 * 106.97598 * 333.48661 * 20 19 18 22 22 H 1.09005 * 109.46678 * 65.71728 * 1 2 3 23 23 H 1.09001 * 109.46824 * 185.71081 * 1 2 3 24 24 H 1.08997 * 109.47224 * 305.71889 * 1 2 3 25 25 H 1.08999 * 109.47247 * 239.99925 * 2 1 3 26 26 H 1.08999 * 109.46578 * 120.00174 * 2 1 3 27 27 H 1.00896 * 111.00119 * 209.98159 * 5 3 2 28 28 H 1.08999 * 109.47340 * 295.84518 * 6 5 3 29 29 H 1.08999 * 109.47370 * 55.84108 * 6 5 3 30 30 H 1.09005 * 109.47373 * 300.00150 * 7 6 5 31 31 H 1.09002 * 109.47166 * 60.00107 * 7 6 5 32 32 H 0.97005 * 120.00237 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.48658 * 20.43886 * 18 16 3 34 34 H 1.08994 * 110.60164 * 257.84812 * 18 16 3 35 35 H 1.08997 * 109.88422 * 242.60957 * 19 18 16 36 36 H 1.08996 * 109.87812 * 121.45520 * 19 18 16 37 37 H 1.09002 * 110.62477 * 158.56689 * 21 20 19 38 38 H 1.09007 * 110.61560 * 281.56151 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 0.0325 5 7 1.5151 2.1475 1.1770 6 6 2.3773 1.9336 2.3468 7 6 1.8576 2.7638 3.5222 8 6 2.7426 2.5449 4.7221 9 1 3.5912 1.8804 4.6533 10 6 2.4690 3.1929 5.9080 11 7 1.4360 4.0025 5.9917 12 14 3.5655 2.9210 7.3956 13 1 4.6637 3.9207 7.3904 14 1 2.7637 3.0731 8.6362 15 1 4.1412 1.5531 7.3428 16 6 1.5677 2.1505 -1.2714 17 1 0.4820 2.1070 -1.3580 18 6 2.0658 3.6159 -1.3053 19 6 2.4880 3.8375 -2.7706 20 8 2.1998 2.6247 -3.4864 21 6 2.2478 1.5472 -2.5266 22 1 -0.3633 0.4226 -0.9368 23 1 -0.3633 -1.0226 0.1023 24 1 -0.3633 0.5999 0.8343 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.4003 3.1318 0.9875 28 1 2.3689 0.8774 2.6162 29 1 3.3959 2.2395 2.1082 30 1 1.8661 3.8200 3.2528 31 1 0.8390 2.4579 3.7608 32 1 1.2437 4.4587 6.8259 33 1 2.9187 3.7444 -0.6389 34 1 1.2628 4.3003 -1.0319 35 1 3.5554 4.0525 -2.8204 36 1 1.9210 4.6641 -3.1987 37 1 1.6884 0.6848 -2.8893 38 1 3.2801 1.2726 -2.3092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308737284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:40 Heat of formation + Delta-G solvation = -70.105436 kcal Electronic energy + Delta-G solvation = -16199.427386 eV Core-core repulsion = 13654.818180 eV Total energy + Delta-G solvation = -2544.609207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79252 -36.95860 -33.80244 -32.09351 -31.62961 -29.17526 -28.69220 -25.22398 -23.97977 -22.76860 -21.61590 -20.40482 -19.27867 -16.76527 -16.39461 -16.17855 -15.32694 -14.81682 -14.48814 -14.09113 -13.86294 -13.41529 -13.21092 -13.06687 -12.51740 -12.19244 -11.71483 -11.56379 -11.33489 -11.13447 -11.08944 -10.89931 -10.81557 -10.62786 -10.42786 -10.21219 -9.92439 -9.78325 -9.35127 -9.15447 -8.36994 -7.81603 -6.01347 -4.03955 3.30750 3.37178 3.40492 3.84966 4.36596 4.47857 4.59066 4.76727 4.96053 5.06592 5.21387 5.32680 5.34787 5.43644 5.45270 5.62505 5.66805 5.68577 5.72628 5.90991 5.94091 6.05790 6.20245 6.27234 6.36216 6.43629 6.45785 6.73356 6.76167 6.97341 7.48524 7.71000 7.82259 7.95021 8.06688 8.42115 9.03236 9.60029 11.10067 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037788 B = 0.005261 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.801826 B = 5320.860421 C = 5675.253236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.096 3.904 4 H 0.040 0.960 5 N -0.684 5.684 6 C 0.067 3.933 7 C 0.025 3.975 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.122 4.122 17 H 0.096 0.904 18 C -0.158 4.158 19 C 0.049 3.951 20 O -0.382 6.382 21 C 0.054 3.946 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.336 0.664 28 H 0.058 0.942 29 H 0.014 0.986 30 H 0.012 0.988 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -3.624 -15.527 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.015 4.015 4 H 0.058 0.942 5 N -0.315 5.315 6 C -0.061 4.061 7 C -0.013 4.013 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.141 4.141 17 H 0.114 0.886 18 C -0.196 4.196 19 C -0.028 4.028 20 O -0.301 6.301 21 C -0.023 4.023 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.119 -4.029 -15.451 15.968 hybrid contribution 1.451 0.548 0.984 1.837 sum 1.570 -3.480 -14.467 14.962 Atomic orbital electron populations 1.21686 0.95336 1.00754 1.02359 1.21504 0.97116 0.95358 1.00969 1.21480 0.96388 0.94470 0.89119 0.94241 1.60620 1.51494 1.15793 1.03641 1.22194 0.92529 1.00901 0.90522 1.19077 0.97136 0.94297 0.90764 1.21169 1.12124 1.26819 0.95924 0.92806 1.24995 0.95302 0.95202 0.98810 1.69969 1.27528 1.29204 1.26561 0.86595 0.80482 0.78552 0.82365 1.20716 1.21171 1.19881 1.22963 1.02075 0.94027 0.95044 0.88603 1.23042 1.02258 0.97382 0.96935 1.23131 0.99978 0.88200 0.91495 1.88841 1.92209 1.16098 1.32995 1.23596 0.99939 0.90756 0.88023 0.93665 0.94019 0.90517 0.92820 0.91902 0.84498 0.92334 0.96818 0.96950 0.95653 0.92986 0.90574 0.89981 0.92594 0.89984 0.88942 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.38 37.16 0.35 -1.51 16 2 C -0.11 -1.45 5.67 -26.73 -0.15 -1.60 16 3 C 0.10 1.32 1.76 -67.71 -0.12 1.20 16 4 H 0.04 0.57 7.67 -51.93 -0.40 0.18 16 5 N -0.68 -11.62 5.40 -106.73 -0.58 -12.20 16 6 C 0.07 1.38 5.47 -3.83 -0.02 1.36 16 7 C 0.02 0.64 5.19 -27.89 -0.14 0.49 16 8 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 9 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 12 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.12 -1.46 2.51 -88.62 -0.22 -1.68 16 17 H 0.10 1.18 6.52 -51.93 -0.34 0.84 16 18 C -0.16 -1.81 5.32 -25.20 -0.13 -1.95 16 19 C 0.05 0.53 7.70 37.73 0.29 0.82 16 20 O -0.38 -4.88 11.52 -35.23 -0.41 -5.28 16 21 C 0.05 0.60 6.38 38.21 0.24 0.85 16 22 H 0.04 0.53 6.72 -51.93 -0.35 0.18 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 1.17 7.37 -51.93 -0.38 0.79 16 25 H 0.05 0.59 7.41 -51.93 -0.38 0.20 16 26 H 0.06 0.90 7.65 -51.93 -0.40 0.51 16 27 H 0.34 5.62 7.13 -39.29 -0.28 5.34 16 28 H 0.06 1.23 7.64 -51.93 -0.40 0.83 16 29 H 0.01 0.28 7.95 -51.93 -0.41 -0.13 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 0.92 7.84 -51.93 -0.41 0.52 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 38 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -29.80 299.87 -7.73 -37.53 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.66 Total: 0.46 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.32 Total: -15.52 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.16 Total: -38.32 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.41 Total: -5.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.80 -7.73 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308737284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.577 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds