Wall clock time and date at job start Sun Mar 29 2020 21:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47310 * 2 1 4 4 H 1.09002 * 109.47019 * 178.18512 * 3 2 1 5 5 N 1.46901 * 109.46944 * 58.19137 * 3 2 1 6 6 C 1.46894 * 111.00231 * 86.02280 * 5 3 2 7 7 C 1.52994 * 109.47378 * 175.84327 * 6 5 3 8 8 C 1.50697 * 109.47569 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00027 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00352 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99910 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46980 * 90.00060 * 12 10 8 14 14 H 1.48498 * 109.47593 * 209.99611 * 12 10 8 15 15 H 1.48498 * 109.47315 * 330.00236 * 12 10 8 16 16 C 1.52996 * 109.47147 * 298.18976 * 3 2 1 17 17 H 1.09003 * 110.80407 * 56.37524 * 16 3 2 18 18 C 1.54812 * 110.90820 * 179.97438 * 16 3 2 19 19 C 1.54096 * 104.18846 * 139.11293 * 18 16 3 20 20 O 1.43745 * 107.29296 * 2.03369 * 19 18 16 21 21 C 1.44377 * 106.97598 * 333.48661 * 20 19 18 22 22 H 1.09005 * 109.46678 * 65.71728 * 1 2 3 23 23 H 1.09001 * 109.46824 * 185.71081 * 1 2 3 24 24 H 1.08997 * 109.47224 * 305.71889 * 1 2 3 25 25 H 1.08999 * 109.47247 * 239.99925 * 2 1 3 26 26 H 1.08999 * 109.46578 * 120.00174 * 2 1 3 27 27 H 1.00896 * 111.00119 * 209.98159 * 5 3 2 28 28 H 1.08999 * 109.47340 * 295.84518 * 6 5 3 29 29 H 1.08999 * 109.47370 * 55.84108 * 6 5 3 30 30 H 1.09005 * 109.47373 * 300.00150 * 7 6 5 31 31 H 1.09002 * 109.47166 * 60.00107 * 7 6 5 32 32 H 0.97005 * 120.00237 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.48658 * 20.43886 * 18 16 3 34 34 H 1.08994 * 110.60164 * 257.84812 * 18 16 3 35 35 H 1.08997 * 109.88422 * 242.60957 * 19 18 16 36 36 H 1.08996 * 109.87812 * 121.45520 * 19 18 16 37 37 H 1.09002 * 110.62477 * 158.56689 * 21 20 19 38 38 H 1.09007 * 110.61560 * 281.56151 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 0.0325 5 7 1.5151 2.1475 1.1770 6 6 2.3773 1.9336 2.3468 7 6 1.8576 2.7638 3.5222 8 6 2.7426 2.5449 4.7221 9 1 3.5912 1.8804 4.6533 10 6 2.4690 3.1929 5.9080 11 7 1.4360 4.0025 5.9917 12 14 3.5655 2.9210 7.3956 13 1 4.6637 3.9207 7.3904 14 1 2.7637 3.0731 8.6362 15 1 4.1412 1.5531 7.3428 16 6 1.5677 2.1505 -1.2714 17 1 0.4820 2.1070 -1.3580 18 6 2.0658 3.6159 -1.3053 19 6 2.4880 3.8375 -2.7706 20 8 2.1998 2.6247 -3.4864 21 6 2.2478 1.5472 -2.5266 22 1 -0.3633 0.4226 -0.9368 23 1 -0.3633 -1.0226 0.1023 24 1 -0.3633 0.5999 0.8343 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.4003 3.1318 0.9875 28 1 2.3689 0.8774 2.6162 29 1 3.3959 2.2395 2.1082 30 1 1.8661 3.8200 3.2528 31 1 0.8390 2.4579 3.7608 32 1 1.2437 4.4587 6.8259 33 1 2.9187 3.7444 -0.6389 34 1 1.2628 4.3003 -1.0319 35 1 3.5554 4.0525 -2.8204 36 1 1.9210 4.6641 -3.1987 37 1 1.6884 0.6848 -2.8893 38 1 3.2801 1.2726 -2.3092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308737284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:40 Heat of formation + Delta-G solvation = -89.410910 kcal Electronic energy + Delta-G solvation = -16200.264534 eV Core-core repulsion = 13654.818180 eV Total energy + Delta-G solvation = -2545.446355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77064 -38.18989 -35.64792 -33.85501 -32.60251 -30.59199 -29.97700 -26.74894 -25.44190 -23.95404 -22.67589 -22.09352 -20.37938 -18.49817 -17.69147 -17.39796 -16.51577 -16.30058 -15.93326 -15.42964 -15.05501 -14.73514 -14.49880 -14.33393 -14.02125 -13.62689 -13.20497 -12.91375 -12.74448 -12.49334 -12.48143 -12.31602 -12.12699 -11.87952 -11.83032 -11.58498 -11.34826 -11.25910 -11.06058 -10.65600 -10.57033 -9.24010 -8.21130 -6.32538 1.39811 1.41163 1.52365 2.39822 2.96718 3.12510 3.24834 3.58558 3.76640 4.01141 4.14085 4.24415 4.33191 4.39000 4.45341 4.52795 4.60543 4.66742 4.77181 4.81765 4.84109 4.90124 4.97205 5.05522 5.10708 5.21772 5.30224 5.40879 5.44010 5.63193 5.67711 5.79980 5.88467 6.15695 6.30870 6.56970 6.84798 7.36927 8.90934 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037788 B = 0.005261 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.801826 B = 5320.860421 C = 5675.253236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.098 3.902 4 H 0.038 0.962 5 N -0.686 5.686 6 C 0.087 3.913 7 C 0.032 3.968 8 C -0.545 4.545 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.264 1.264 16 C -0.116 4.116 17 H 0.094 0.906 18 C -0.159 4.159 19 C 0.049 3.951 20 O -0.398 6.398 21 C 0.056 3.944 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.337 0.663 28 H 0.055 0.945 29 H 0.015 0.985 30 H -0.009 1.009 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -4.380 -16.309 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.012 4.012 4 H 0.056 0.944 5 N -0.317 5.317 6 C -0.042 4.042 7 C -0.005 4.005 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.135 4.135 17 H 0.113 0.887 18 C -0.197 4.197 19 C -0.028 4.028 20 O -0.318 6.318 21 C -0.021 4.021 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.009 0.991 31 H 0.013 0.987 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.047 -4.793 -16.254 16.978 hybrid contribution 1.126 0.798 1.188 1.821 sum 2.173 -3.995 -15.066 15.738 Atomic orbital electron populations 1.21630 0.95232 1.00991 1.01886 1.21529 0.97165 0.94653 1.01532 1.21536 0.96232 0.94904 0.88524 0.94438 1.60546 1.50909 1.16248 1.04032 1.21776 0.92727 0.99424 0.90228 1.18921 0.95369 0.93751 0.92500 1.21606 1.12627 1.26999 0.97090 0.92306 1.25950 0.96737 0.94709 1.02192 1.70101 1.29298 1.30130 1.27599 0.85442 0.78502 0.78996 0.78069 1.19711 1.20703 1.18791 1.22865 1.02002 0.94208 0.94407 0.88746 1.23038 1.01992 0.97230 0.97439 1.23215 1.00735 0.88104 0.90742 1.88828 1.92352 1.16865 1.33741 1.23661 1.00416 0.90836 0.87148 0.92208 0.92953 0.93380 0.90037 0.93525 0.84385 0.92649 0.96664 0.99094 0.98744 0.92737 0.91433 0.89803 0.91820 0.88707 0.87369 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.38 71.98 0.67 -2.75 16 2 C -0.11 -2.70 5.67 30.60 0.17 -2.52 16 3 C 0.10 2.59 1.76 44.91 0.08 2.67 16 4 H 0.04 1.03 7.67 -2.39 -0.02 1.02 16 5 N -0.69 -23.37 5.40 -491.60 -2.65 -26.02 16 6 C 0.09 3.65 5.47 86.30 0.47 4.12 16 7 C 0.03 1.71 5.19 29.85 0.15 1.86 16 8 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 9 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 10 C 0.00 0.13 5.46 84.66 0.46 0.59 16 11 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 12 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 16 C -0.12 -2.57 2.51 -9.50 -0.02 -2.59 16 17 H 0.09 2.16 6.52 -2.39 -0.02 2.14 16 18 C -0.16 -3.46 5.32 31.58 0.17 -3.29 16 19 C 0.05 0.97 7.70 72.35 0.56 1.52 16 20 O -0.40 -9.27 11.52 -148.98 -1.72 -10.99 16 21 C 0.06 1.11 6.38 72.66 0.46 1.58 16 22 H 0.06 1.27 6.72 -2.38 -0.02 1.25 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.45 7.37 -2.39 -0.02 1.43 16 25 H 0.08 1.55 7.41 -2.39 -0.02 1.53 16 26 H 0.05 1.29 7.65 -2.39 -0.02 1.27 16 27 H 0.34 11.39 7.13 -89.70 -0.64 10.75 16 28 H 0.06 2.34 7.64 -2.39 -0.02 2.32 16 29 H 0.02 0.63 7.95 -2.39 -0.02 0.61 16 30 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 32 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 33 H 0.07 1.58 7.84 -2.39 -0.02 1.56 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.11 1.80 8.05 -2.39 -0.02 1.78 16 38 H 0.06 1.23 8.01 -2.38 -0.02 1.21 16 Total: -1.00 -63.75 299.87 1.73 -62.02 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.37 Total: 15.10 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 3.41 Total: -29.78 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.37 Total: -82.65 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.72 Total: -10.99 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.75 1.73 -62.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308737284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.390 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds