Wall clock time and date at job start Sun Mar 29 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 H 1.08996 * 109.47288 * 304.36266 * 3 2 1 5 5 N 1.46905 * 109.47043 * 64.36379 * 3 2 1 6 6 C 1.46894 * 111.00071 * 248.43999 * 5 3 2 7 7 C 1.53000 * 109.47335 * 174.83781 * 6 5 3 8 8 C 1.50695 * 109.47047 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00331 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99802 * 179.97438 * 8 7 6 11 11 N 1.31525 * 119.99944 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99899 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47795 * 89.99873 * 12 10 8 14 14 H 1.48510 * 109.46939 * 209.99564 * 12 10 8 15 15 H 1.48499 * 109.46984 * 329.99279 * 12 10 8 16 16 C 1.53006 * 109.47313 * 184.36190 * 3 2 1 17 17 H 1.09004 * 110.75161 * 59.46114 * 16 3 2 18 18 C 1.55303 * 110.84915 * 183.16126 * 16 3 2 19 19 C 1.54948 * 100.94301 * 152.32322 * 18 16 3 20 20 O 1.43648 * 105.13527 * 323.55600 * 19 18 16 21 21 C 1.43235 * 109.97352 * 24.42592 * 20 19 18 22 22 H 1.09003 * 109.47117 * 177.76668 * 1 2 3 23 23 H 1.08995 * 109.47199 * 297.77283 * 1 2 3 24 24 H 1.09006 * 109.47175 * 57.77621 * 1 2 3 25 25 H 1.08999 * 109.47096 * 119.99992 * 2 1 3 26 26 H 1.09003 * 109.47377 * 240.00270 * 2 1 3 27 27 H 1.00897 * 111.00016 * 124.48682 * 5 3 2 28 28 H 1.09001 * 109.46753 * 294.83866 * 6 5 3 29 29 H 1.08999 * 109.47183 * 54.83448 * 6 5 3 30 30 H 1.09002 * 109.46764 * 299.99897 * 7 6 5 31 31 H 1.08997 * 109.47011 * 60.00191 * 7 6 5 32 32 H 0.96996 * 119.99661 * 180.02562 * 11 10 8 33 33 H 1.09001 * 111.12020 * 270.24155 * 18 16 3 34 34 H 1.08992 * 111.12721 * 34.40100 * 18 16 3 35 35 H 1.08995 * 110.30981 * 204.63975 * 19 18 16 36 36 H 1.09007 * 110.39252 * 82.51058 * 19 18 16 37 37 H 1.09006 * 109.83329 * 238.77896 * 21 20 19 38 38 H 1.09000 * 109.83383 * 117.79945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6142 1.9784 -0.8483 5 7 1.6382 2.1039 1.2487 6 6 0.6370 3.1479 0.9929 7 6 0.1495 3.7241 2.3238 8 6 -0.8781 4.7947 2.0613 9 1 -1.1554 5.0400 1.0467 10 6 -1.4642 5.4612 3.1165 11 7 -2.3607 6.3959 2.8875 12 14 -0.9840 5.0375 4.8713 13 1 0.1579 5.8887 5.2914 14 1 -2.1393 5.2790 5.7726 15 1 -0.5892 3.6078 4.9449 16 6 3.5660 1.4440 -0.1097 17 1 3.8879 0.9488 -1.0259 18 6 4.1243 2.8911 -0.0328 19 6 5.5341 2.6317 0.5555 20 8 5.3594 1.5508 1.4853 21 6 4.2065 0.7795 1.1280 22 1 -0.3633 -1.0269 -0.0400 23 1 -0.3633 0.4788 0.9092 24 1 -0.3634 0.5480 -0.8694 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.4393 2.4818 1.7317 28 1 1.0847 3.9420 0.3954 29 1 -0.2063 2.7180 0.4524 30 1 -0.2982 2.9300 2.9213 31 1 0.9928 4.1541 2.8642 32 1 -2.7727 6.8650 3.6298 33 1 4.1888 3.3404 -1.0238 34 1 3.5262 3.5078 0.6379 35 1 5.8979 3.5199 1.0719 36 1 6.2280 2.3430 -0.2341 37 1 3.4952 0.7733 1.9539 38 1 4.5044 -0.2410 0.8871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308737285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:42 Heat of formation + Delta-G solvation = -63.448480 kcal Electronic energy + Delta-G solvation = -16456.638438 eV Core-core repulsion = 13912.317899 eV Total energy + Delta-G solvation = -2544.320539 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95050 -36.90070 -33.73752 -32.04819 -31.86619 -29.66644 -28.81830 -25.49813 -23.59116 -22.84961 -21.37366 -20.45992 -19.45033 -17.07801 -16.60037 -16.27088 -15.30392 -14.64993 -14.60194 -14.19545 -13.67509 -13.36560 -13.14656 -12.83784 -12.61577 -12.56579 -12.25547 -11.59984 -11.54470 -11.33019 -11.02367 -10.89828 -10.84312 -10.59434 -10.46421 -10.04795 -9.82987 -9.65076 -9.53127 -9.21650 -8.52809 -7.92330 -6.03924 -4.02197 3.33248 3.40770 3.47227 3.82320 4.33961 4.47318 4.52267 4.63502 4.89802 5.08334 5.11139 5.24248 5.30913 5.36096 5.41850 5.62332 5.62965 5.73064 5.81140 5.83124 5.89910 6.05779 6.14834 6.15718 6.19049 6.29138 6.43293 6.65181 6.79810 6.93920 7.16213 7.38955 7.62303 7.76693 7.91350 8.53510 9.00073 9.58803 11.09389 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.006872 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.276685 B = 4073.507183 C = 4572.811062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.094 3.906 4 H 0.061 0.939 5 N -0.689 5.689 6 C 0.074 3.926 7 C -0.009 4.009 8 C -0.521 4.521 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C -0.135 4.135 17 H 0.086 0.914 18 C -0.160 4.160 19 C 0.053 3.947 20 O -0.387 6.387 21 C 0.053 3.947 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.337 0.663 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.878 -11.153 -6.549 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.017 4.017 4 H 0.079 0.921 5 N -0.322 5.322 6 C -0.054 4.054 7 C -0.047 4.047 8 C -0.559 4.559 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.187 1.187 16 C -0.154 4.154 17 H 0.104 0.896 18 C -0.198 4.198 19 C -0.024 4.024 20 O -0.307 6.307 21 C -0.024 4.024 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.416 -11.543 -6.125 18.025 hybrid contribution 0.538 0.715 0.234 0.925 sum 12.953 -10.827 -5.891 17.881 Atomic orbital electron populations 1.21710 0.95429 1.00584 1.02802 1.21539 0.96695 0.95433 1.00903 1.21503 0.90958 0.96107 0.93087 0.92122 1.60724 1.16515 1.34054 1.20896 1.22064 0.93424 0.90461 0.99497 1.19526 0.96055 0.96082 0.93001 1.21074 1.21639 1.18176 0.95045 0.91201 1.25007 0.94591 0.94600 0.99214 1.69921 1.28016 1.24540 1.31862 0.86757 0.78018 0.79710 0.84715 1.20418 1.21457 1.18718 1.23182 0.97071 0.95875 0.99287 0.89596 1.23417 0.96653 0.97111 1.02636 1.23328 0.96329 0.90302 0.92410 1.88395 1.47266 1.42901 1.52101 1.23268 0.87370 0.94487 0.97263 0.93709 0.90982 0.93508 0.91693 0.92900 0.84323 0.96231 0.91550 0.95669 0.97421 0.92753 0.89891 0.89722 0.89776 0.92484 0.89521 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.18 37.15 0.34 -1.62 16 2 C -0.11 -1.29 5.37 -26.73 -0.14 -1.44 16 3 C 0.09 1.22 2.01 -67.71 -0.14 1.09 16 4 H 0.06 0.84 7.56 -51.93 -0.39 0.44 16 5 N -0.69 -11.07 5.00 -106.72 -0.53 -11.60 16 6 C 0.07 1.44 5.04 -3.83 -0.02 1.43 16 7 C -0.01 -0.21 4.34 -27.89 -0.12 -0.33 16 8 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 9 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 10 C 0.07 1.97 5.47 -17.81 -0.10 1.87 16 11 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 12 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 16 C -0.13 -1.51 2.88 -88.67 -0.26 -1.77 16 17 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.16 -1.81 6.34 -24.48 -0.16 -1.97 16 19 C 0.05 0.58 7.78 38.19 0.30 0.88 16 20 O -0.39 -5.25 11.36 -35.23 -0.40 -5.65 16 21 C 0.05 0.63 6.12 37.89 0.23 0.86 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.13 7.33 -51.93 -0.38 0.75 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.79 7.44 -51.93 -0.39 0.40 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.34 5.37 5.54 -39.29 -0.22 5.15 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 1.33 7.30 -51.93 -0.38 0.95 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.11 6.45 -51.93 -0.34 0.78 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.15 6.50 -51.93 -0.34 0.81 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -30.45 295.19 -7.36 -37.81 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.59 Total: 1.11 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.39 Total: -16.23 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.24 Total: -38.90 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.40 Total: -5.65 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.45 -7.36 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308737285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.640 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds