Wall clock time and date at job start Sun Mar 29 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 H 1.08996 * 109.47288 * 304.36266 * 3 2 1 5 5 N 1.46905 * 109.47043 * 64.36379 * 3 2 1 6 6 C 1.46894 * 111.00071 * 248.43999 * 5 3 2 7 7 C 1.53000 * 109.47335 * 174.83781 * 6 5 3 8 8 C 1.50695 * 109.47047 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00331 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99802 * 179.97438 * 8 7 6 11 11 N 1.31525 * 119.99944 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99899 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47795 * 89.99873 * 12 10 8 14 14 H 1.48510 * 109.46939 * 209.99564 * 12 10 8 15 15 H 1.48499 * 109.46984 * 329.99279 * 12 10 8 16 16 C 1.53006 * 109.47313 * 184.36190 * 3 2 1 17 17 H 1.09004 * 110.75161 * 59.46114 * 16 3 2 18 18 C 1.55303 * 110.84915 * 183.16126 * 16 3 2 19 19 C 1.54948 * 100.94301 * 152.32322 * 18 16 3 20 20 O 1.43648 * 105.13527 * 323.55600 * 19 18 16 21 21 C 1.43235 * 109.97352 * 24.42592 * 20 19 18 22 22 H 1.09003 * 109.47117 * 177.76668 * 1 2 3 23 23 H 1.08995 * 109.47199 * 297.77283 * 1 2 3 24 24 H 1.09006 * 109.47175 * 57.77621 * 1 2 3 25 25 H 1.08999 * 109.47096 * 119.99992 * 2 1 3 26 26 H 1.09003 * 109.47377 * 240.00270 * 2 1 3 27 27 H 1.00897 * 111.00016 * 124.48682 * 5 3 2 28 28 H 1.09001 * 109.46753 * 294.83866 * 6 5 3 29 29 H 1.08999 * 109.47183 * 54.83448 * 6 5 3 30 30 H 1.09002 * 109.46764 * 299.99897 * 7 6 5 31 31 H 1.08997 * 109.47011 * 60.00191 * 7 6 5 32 32 H 0.96996 * 119.99661 * 180.02562 * 11 10 8 33 33 H 1.09001 * 111.12020 * 270.24155 * 18 16 3 34 34 H 1.08992 * 111.12721 * 34.40100 * 18 16 3 35 35 H 1.08995 * 110.30981 * 204.63975 * 19 18 16 36 36 H 1.09007 * 110.39252 * 82.51058 * 19 18 16 37 37 H 1.09006 * 109.83329 * 238.77896 * 21 20 19 38 38 H 1.09000 * 109.83383 * 117.79945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6142 1.9784 -0.8483 5 7 1.6382 2.1039 1.2487 6 6 0.6370 3.1479 0.9929 7 6 0.1495 3.7241 2.3238 8 6 -0.8781 4.7947 2.0613 9 1 -1.1554 5.0400 1.0467 10 6 -1.4642 5.4612 3.1165 11 7 -2.3607 6.3959 2.8875 12 14 -0.9840 5.0375 4.8713 13 1 0.1579 5.8887 5.2914 14 1 -2.1393 5.2790 5.7726 15 1 -0.5892 3.6078 4.9449 16 6 3.5660 1.4440 -0.1097 17 1 3.8879 0.9488 -1.0259 18 6 4.1243 2.8911 -0.0328 19 6 5.5341 2.6317 0.5555 20 8 5.3594 1.5508 1.4853 21 6 4.2065 0.7795 1.1280 22 1 -0.3633 -1.0269 -0.0400 23 1 -0.3633 0.4788 0.9092 24 1 -0.3634 0.5480 -0.8694 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.4393 2.4818 1.7317 28 1 1.0847 3.9420 0.3954 29 1 -0.2063 2.7180 0.4524 30 1 -0.2982 2.9300 2.9213 31 1 0.9928 4.1541 2.8642 32 1 -2.7727 6.8650 3.6298 33 1 4.1888 3.3404 -1.0238 34 1 3.5262 3.5078 0.6379 35 1 5.8979 3.5199 1.0719 36 1 6.2280 2.3430 -0.2341 37 1 3.4952 0.7733 1.9539 38 1 4.5044 -0.2410 0.8871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308737285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:42 Heat of formation + Delta-G solvation = -83.809654 kcal Electronic energy + Delta-G solvation = -16457.521365 eV Core-core repulsion = 13912.317899 eV Total energy + Delta-G solvation = -2545.203466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92332 -38.07755 -35.55965 -33.84657 -32.85071 -31.01277 -30.11430 -26.81090 -25.26095 -23.76027 -22.37605 -22.19343 -20.54466 -18.97962 -17.89364 -17.27835 -16.43744 -16.30234 -15.76149 -15.63144 -15.05344 -14.67575 -14.52729 -14.17769 -14.05717 -13.59023 -13.54287 -13.33437 -12.91253 -12.47960 -12.41054 -12.07127 -11.97720 -11.83571 -11.80934 -11.53589 -11.44933 -11.40395 -11.22984 -10.77859 -10.45714 -9.24992 -8.31144 -6.35141 1.34964 1.37252 1.50453 2.35404 2.94079 3.04631 3.29149 3.45676 3.68641 3.97319 4.16291 4.21077 4.34243 4.35633 4.45141 4.47148 4.57623 4.69991 4.76424 4.84177 4.88149 4.92575 4.96642 4.98180 5.11826 5.18074 5.18763 5.29514 5.42140 5.50620 5.58308 5.64203 6.05340 6.19341 6.26847 6.53936 6.73622 7.29885 8.85479 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.006872 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.276685 B = 4073.507183 C = 4572.811062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.093 3.907 4 H 0.055 0.945 5 N -0.687 5.687 6 C 0.091 3.909 7 C -0.003 4.003 8 C -0.532 4.532 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.950 5.950 12 Si 0.951 3.049 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.250 1.250 16 C -0.125 4.125 17 H 0.111 0.889 18 C -0.161 4.161 19 C 0.051 3.949 20 O -0.410 6.410 21 C 0.053 3.947 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.338 0.662 28 H 0.014 0.986 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.267 0.733 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.703 -12.796 -6.509 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.017 4.017 4 H 0.073 0.927 5 N -0.320 5.320 6 C -0.038 4.038 7 C -0.041 4.041 8 C -0.570 4.570 9 H 0.051 0.949 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.774 3.226 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.173 1.173 16 C -0.144 4.144 17 H 0.129 0.871 18 C -0.199 4.199 19 C -0.025 4.025 20 O -0.330 6.330 21 C -0.024 4.024 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.159 0.841 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.256 -13.200 -6.101 20.365 hybrid contribution -0.052 1.242 0.130 1.250 sum 14.205 -11.958 -5.971 19.505 Atomic orbital electron populations 1.21689 0.96588 1.01171 1.01038 1.21533 0.95568 0.94723 1.02289 1.21574 0.92568 0.96296 0.91212 0.92676 1.60641 1.16145 1.32426 1.22809 1.21688 0.94176 0.91125 0.96837 1.19410 0.94835 0.94565 0.95259 1.21409 1.22694 1.19379 0.93520 0.94925 1.25968 0.94478 0.94390 1.04189 1.70064 1.29524 1.25984 1.33493 0.85646 0.78056 0.80191 0.78679 1.19226 1.20875 1.17321 1.23132 0.95210 0.95988 1.00102 0.87074 1.23403 0.96591 0.96940 1.02954 1.23465 0.96414 0.89981 0.92637 1.88370 1.47691 1.43674 1.53268 1.23279 0.86886 0.95289 0.96906 0.92102 0.93984 0.93881 0.91539 0.90166 0.84116 0.96771 0.92380 0.96113 0.96910 0.92458 0.88358 0.92033 0.89467 0.90420 0.91126 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.18 71.98 0.66 -3.06 16 2 C -0.10 -2.22 5.37 30.59 0.16 -2.06 16 3 C 0.09 2.26 2.01 44.92 0.09 2.35 16 4 H 0.06 1.43 7.56 -2.39 -0.02 1.41 16 5 N -0.69 -21.49 5.00 -491.57 -2.46 -23.95 16 6 C 0.09 3.58 5.04 86.30 0.43 4.01 16 7 C 0.00 -0.14 4.34 29.85 0.13 -0.01 16 8 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 9 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 10 C 0.01 0.40 5.47 84.65 0.46 0.86 16 11 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 12 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 16 C -0.13 -2.46 2.88 -9.53 -0.03 -2.49 16 17 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 18 C -0.16 -3.30 6.34 32.05 0.20 -3.10 16 19 C 0.05 1.00 7.78 72.65 0.56 1.57 16 20 O -0.41 -10.26 11.36 -148.98 -1.69 -11.95 16 21 C 0.05 1.14 6.12 72.45 0.44 1.58 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.04 1.30 7.33 -2.39 -0.02 1.28 16 24 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.07 1.44 7.44 -2.39 -0.02 1.42 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.34 10.49 5.54 -89.70 -0.50 9.99 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 2.37 7.30 -2.39 -0.02 2.35 16 30 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 31 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.56 6.45 -2.39 -0.02 1.54 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.07 1.75 6.50 -2.38 -0.02 1.73 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.17 295.19 1.87 -64.30 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.46 Total: 15.50 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.37 Total: -31.26 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.16 Total: -83.93 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.69 Total: -11.95 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -66.17 1.87 -64.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308737285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.513 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds