Wall clock time and date at job start Sun Mar 29 2020 21:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47223 * 2 1 4 4 H 1.08994 * 109.47228 * 54.99581 * 3 2 1 5 5 N 1.46900 * 109.46716 * 294.99798 * 3 2 1 6 6 C 1.46904 * 111.00084 * 298.31724 * 5 3 2 7 7 C 1.53002 * 109.47208 * 185.39554 * 6 5 3 8 8 O 1.42903 * 109.47094 * 64.99942 * 7 6 5 9 9 C 1.42897 * 113.99864 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46856 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00157 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99701 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00507 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99816 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47320 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46852 * 120.00440 * 14 12 10 17 17 H 1.48503 * 109.47020 * 239.99980 * 14 12 10 18 18 C 1.52997 * 109.47154 * 174.99839 * 3 2 1 19 19 C 1.52998 * 117.50018 * 254.22406 * 18 3 2 20 20 C 1.53006 * 117.49709 * 185.56334 * 18 3 2 21 21 H 1.08996 * 109.47298 * 300.00174 * 1 2 3 22 22 H 1.09000 * 109.46598 * 60.00282 * 1 2 3 23 23 H 1.09003 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47298 * 239.99825 * 2 1 3 25 25 H 1.09006 * 109.47014 * 119.99782 * 2 1 3 26 26 H 1.00904 * 111.00398 * 62.27468 * 5 3 2 27 27 H 1.08995 * 109.47142 * 305.39329 * 6 5 3 28 28 H 1.09003 * 109.47007 * 65.39880 * 6 5 3 29 29 H 1.08994 * 109.47311 * 185.00141 * 7 6 5 30 30 H 1.09006 * 109.46805 * 305.00199 * 7 6 5 31 31 H 1.09003 * 109.46881 * 299.99545 * 9 8 7 32 32 H 1.08995 * 109.47283 * 59.99882 * 9 8 7 33 33 H 0.96996 * 120.00304 * 179.97438 * 13 12 10 34 34 H 1.09004 * 115.55232 * 39.89613 * 18 3 2 35 35 H 1.09003 * 117.49796 * 359.97438 * 19 18 3 36 36 H 1.08991 * 117.50299 * 145.02429 * 19 18 3 37 37 H 1.09001 * 117.49637 * 214.97792 * 20 18 3 38 38 H 1.08996 * 117.49639 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6514 2.0992 -1.2553 6 6 2.2530 1.4220 -2.4119 7 6 1.9375 2.2098 -3.6850 8 8 2.5722 3.4886 -3.6234 9 6 2.3394 4.3089 -4.7702 10 6 3.0519 5.6257 -4.5989 11 1 3.6249 5.8172 -3.7037 12 6 2.9724 6.5859 -5.5851 13 7 2.2751 6.3526 -6.6755 14 14 3.8550 8.2185 -5.3725 15 1 4.5636 8.2318 -4.0676 16 1 4.8374 8.3968 -6.4718 17 1 2.8651 9.3248 -5.4090 18 6 3.5648 1.4443 0.1258 19 6 4.1620 1.8519 1.4741 20 6 4.2597 2.7992 0.2756 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 0.6473 2.1438 -1.3443 27 1 3.3332 1.3651 -2.2782 28 1 1.8437 0.4153 -2.4968 29 1 2.3068 1.6622 -4.5520 30 1 0.8591 2.3432 -3.7718 31 1 2.7169 3.8049 -5.6599 32 1 1.2694 4.4858 -4.8791 33 1 2.2188 7.0282 -7.3691 34 1 4.0844 0.6724 -0.4420 35 1 3.4686 2.1192 2.2715 36 1 5.0745 1.3485 1.7933 37 1 5.2365 2.9185 -0.1932 38 1 3.6305 3.6892 0.2842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324080390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:45 Heat of formation + Delta-G solvation = -35.951140 kcal Electronic energy + Delta-G solvation = -15980.059882 eV Core-core repulsion = 13436.931716 eV Total energy + Delta-G solvation = -2543.128165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81523 -36.60183 -35.13516 -32.78156 -31.96035 -28.70189 -26.80710 -25.61347 -22.36930 -22.20743 -21.97109 -21.57212 -19.25766 -16.44225 -15.94265 -15.87225 -15.30521 -14.89324 -14.67635 -14.14439 -13.98357 -13.57578 -12.99254 -12.82856 -12.52760 -12.07217 -11.67073 -11.55152 -11.32400 -11.19422 -10.96061 -10.79948 -10.71160 -10.57863 -10.33205 -10.07883 -9.92669 -9.89543 -8.99360 -8.72526 -8.07075 -8.01657 -6.04011 -4.04462 3.33720 3.39944 3.47274 3.89142 4.41664 4.54931 4.60415 4.90126 4.95714 5.04234 5.17221 5.21516 5.31749 5.32601 5.45289 5.57557 5.67288 5.75280 5.79725 5.81053 5.86118 5.97437 6.02564 6.16953 6.19891 6.23455 6.31670 6.43553 6.49785 7.19368 7.32093 7.52383 7.67545 7.88719 8.25435 8.71705 9.11424 9.60305 11.07853 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.005561 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.208829 B = 5034.224693 C = 5667.704223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.159 4.159 3 C 0.119 3.881 4 H 0.079 0.921 5 N -0.664 5.664 6 C 0.063 3.937 7 C 0.066 3.934 8 O -0.378 6.378 9 C 0.193 3.807 10 C -0.507 4.507 11 H 0.067 0.933 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.146 4.146 19 C -0.187 4.187 20 C -0.151 4.151 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.337 0.663 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 -12.535 13.280 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C 0.009 3.991 4 H 0.097 0.903 5 N -0.295 5.295 6 C -0.066 4.066 7 C -0.012 4.012 8 O -0.297 6.297 9 C 0.118 3.882 10 C -0.546 4.546 11 H 0.085 0.915 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.165 4.165 19 C -0.225 4.225 20 C -0.189 4.189 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.562 -11.893 13.291 17.844 hybrid contribution -0.354 -0.120 -0.447 0.583 sum -0.916 -12.013 12.844 17.610 Atomic orbital electron populations 1.21780 0.95872 1.01562 1.01882 1.22265 0.96070 0.99144 1.02397 1.21161 0.92857 0.91805 0.93285 0.90327 1.60471 1.14364 1.54029 1.00632 1.22001 1.00857 0.93671 0.90097 1.22221 0.96117 0.87636 0.95237 1.87962 1.72700 1.24749 1.44278 1.20174 0.95577 0.89400 0.83015 1.21113 1.30746 0.98385 1.04321 0.91471 1.24948 0.95748 0.98997 0.94927 1.69976 1.41189 1.34955 1.07983 0.86309 0.79282 0.82838 0.78239 1.19453 1.20945 1.20918 1.22149 0.94503 0.99867 0.99956 1.22990 1.02551 1.05250 0.91665 1.22798 1.01863 0.94250 0.99940 0.92604 0.92722 0.92830 0.91730 0.91687 0.84368 0.90207 0.94909 0.94558 0.95026 0.98129 0.97990 0.92848 0.88545 0.89230 0.89369 0.89155 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.68 37.16 0.36 -1.05 16 2 C -0.16 -1.61 5.23 -26.73 -0.14 -1.75 16 3 C 0.12 1.44 2.71 -67.71 -0.18 1.25 16 4 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 5 N -0.66 -9.80 6.30 -106.72 -0.67 -10.47 16 6 C 0.06 0.96 5.35 -3.82 -0.02 0.94 16 7 C 0.07 1.26 6.26 37.16 0.23 1.50 16 8 O -0.38 -9.41 10.27 -35.23 -0.36 -9.77 16 9 C 0.19 5.46 5.69 36.01 0.20 5.66 16 10 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 11 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 14 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.15 -1.81 3.88 -90.62 -0.35 -2.17 16 19 C -0.19 -2.06 10.18 -26.69 -0.27 -2.33 16 20 C -0.15 -2.08 10.22 -26.69 -0.27 -2.35 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.53 6.83 -51.93 -0.35 0.17 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.34 4.66 7.27 -39.29 -0.29 4.38 16 27 H 0.08 1.29 6.54 -51.93 -0.34 0.95 16 28 H 0.03 0.43 6.53 -51.93 -0.34 0.09 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.10 1.19 7.65 -51.93 -0.40 0.79 16 35 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -31.54 309.52 -8.17 -39.71 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.65 Total: -0.16 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -0.86 Total: -14.45 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.06 Total: -37.28 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.54 -8.17 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324080390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.757 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds