Wall clock time and date at job start Sun Mar 29 2020 21:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47223 * 2 1 4 4 H 1.08994 * 109.47228 * 54.99581 * 3 2 1 5 5 N 1.46900 * 109.46716 * 294.99798 * 3 2 1 6 6 C 1.46904 * 111.00084 * 298.31724 * 5 3 2 7 7 C 1.53002 * 109.47208 * 185.39554 * 6 5 3 8 8 O 1.42903 * 109.47094 * 64.99942 * 7 6 5 9 9 C 1.42897 * 113.99864 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46856 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00157 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99701 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00507 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99816 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47320 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46852 * 120.00440 * 14 12 10 17 17 H 1.48503 * 109.47020 * 239.99980 * 14 12 10 18 18 C 1.52997 * 109.47154 * 174.99839 * 3 2 1 19 19 C 1.52998 * 117.50018 * 254.22406 * 18 3 2 20 20 C 1.53006 * 117.49709 * 185.56334 * 18 3 2 21 21 H 1.08996 * 109.47298 * 300.00174 * 1 2 3 22 22 H 1.09000 * 109.46598 * 60.00282 * 1 2 3 23 23 H 1.09003 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47298 * 239.99825 * 2 1 3 25 25 H 1.09006 * 109.47014 * 119.99782 * 2 1 3 26 26 H 1.00904 * 111.00398 * 62.27468 * 5 3 2 27 27 H 1.08995 * 109.47142 * 305.39329 * 6 5 3 28 28 H 1.09003 * 109.47007 * 65.39880 * 6 5 3 29 29 H 1.08994 * 109.47311 * 185.00141 * 7 6 5 30 30 H 1.09006 * 109.46805 * 305.00199 * 7 6 5 31 31 H 1.09003 * 109.46881 * 299.99545 * 9 8 7 32 32 H 1.08995 * 109.47283 * 59.99882 * 9 8 7 33 33 H 0.96996 * 120.00304 * 179.97438 * 13 12 10 34 34 H 1.09004 * 115.55232 * 39.89613 * 18 3 2 35 35 H 1.09003 * 117.49796 * 359.97438 * 19 18 3 36 36 H 1.08991 * 117.50299 * 145.02429 * 19 18 3 37 37 H 1.09001 * 117.49637 * 214.97792 * 20 18 3 38 38 H 1.08996 * 117.49639 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6514 2.0992 -1.2553 6 6 2.2530 1.4220 -2.4119 7 6 1.9375 2.2098 -3.6850 8 8 2.5722 3.4886 -3.6234 9 6 2.3394 4.3089 -4.7702 10 6 3.0519 5.6257 -4.5989 11 1 3.6249 5.8172 -3.7037 12 6 2.9724 6.5859 -5.5851 13 7 2.2751 6.3526 -6.6755 14 14 3.8550 8.2185 -5.3725 15 1 4.5636 8.2318 -4.0676 16 1 4.8374 8.3968 -6.4718 17 1 2.8651 9.3248 -5.4090 18 6 3.5648 1.4443 0.1258 19 6 4.1620 1.8519 1.4741 20 6 4.2597 2.7992 0.2756 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 0.6473 2.1438 -1.3443 27 1 3.3332 1.3651 -2.2782 28 1 1.8437 0.4153 -2.4968 29 1 2.3068 1.6622 -4.5520 30 1 0.8591 2.3432 -3.7718 31 1 2.7169 3.8049 -5.6599 32 1 1.2694 4.4858 -4.8791 33 1 2.2188 7.0282 -7.3691 34 1 4.0844 0.6724 -0.4420 35 1 3.4686 2.1192 2.2715 36 1 5.0745 1.3485 1.7933 37 1 5.2365 2.9185 -0.1932 38 1 3.6305 3.6892 0.2842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324080390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:45 Heat of formation + Delta-G solvation = -56.719390 kcal Electronic energy + Delta-G solvation = -15980.960460 eV Core-core repulsion = 13436.931716 eV Total energy + Delta-G solvation = -2544.028744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87980 -38.38601 -36.26189 -34.91071 -33.15568 -30.20945 -28.71441 -26.71409 -24.48763 -23.43279 -23.13431 -22.51854 -20.31376 -18.62858 -17.53814 -17.13037 -16.72130 -16.37236 -16.17893 -15.57457 -15.17112 -14.96144 -14.59926 -13.94435 -13.82116 -13.41718 -13.28532 -12.90015 -12.77616 -12.57069 -12.34253 -12.31636 -12.23028 -11.84768 -11.61669 -11.58327 -11.21963 -11.06952 -10.92198 -10.83147 -10.15598 -9.12870 -8.30859 -6.42479 1.39806 1.41456 1.56517 2.36151 2.88282 3.02735 3.27606 3.48863 3.66970 4.01040 4.16684 4.22199 4.27791 4.32245 4.37927 4.45311 4.55267 4.60282 4.67021 4.82876 4.85794 4.86975 4.97060 5.03286 5.11177 5.14872 5.19887 5.23466 5.34718 5.37375 5.46800 5.57387 5.99494 6.21798 6.54963 6.62532 6.89770 7.30038 8.81890 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.005561 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.208829 B = 5034.224693 C = 5667.704223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.151 4.151 3 C 0.122 3.878 4 H 0.080 0.920 5 N -0.687 5.687 6 C 0.077 3.923 7 C 0.055 3.945 8 O -0.393 6.393 9 C 0.208 3.792 10 C -0.543 4.543 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.982 3.018 15 H -0.266 1.266 16 H -0.270 1.270 17 H -0.271 1.271 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.180 4.180 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.341 0.659 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.036 0.964 31 H -0.018 1.018 32 H -0.018 1.018 33 H 0.270 0.730 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -12.967 14.486 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C 0.012 3.988 4 H 0.098 0.902 5 N -0.318 5.318 6 C -0.052 4.052 7 C -0.022 4.022 8 O -0.312 6.312 9 C 0.133 3.867 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.805 3.195 15 H -0.190 1.190 16 H -0.195 1.195 17 H -0.196 1.196 18 C -0.168 4.168 19 C -0.196 4.196 20 C -0.217 4.217 21 H 0.079 0.921 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.161 0.839 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.000 1.000 32 H 0.000 1.000 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.312 -12.354 14.509 19.058 hybrid contribution -0.477 -0.053 -0.815 0.946 sum -0.789 -12.407 13.694 18.495 Atomic orbital electron populations 1.21774 0.95168 1.02271 1.01769 1.22170 0.96588 0.97375 1.02876 1.21188 0.92622 0.93093 0.91884 0.90171 1.60414 1.14753 1.55231 1.01450 1.21841 1.00559 0.94301 0.88539 1.22600 0.96120 0.85573 0.97927 1.87924 1.73566 1.26959 1.42762 1.19790 0.93881 0.89564 0.83487 1.21401 1.31977 0.99937 1.04749 0.92314 1.25952 0.96103 1.03025 0.94135 1.70076 1.41797 1.36610 1.08702 0.85148 0.78268 0.77446 0.78612 1.18967 1.19542 1.19586 1.22248 0.94748 0.98636 1.01211 1.23053 1.03078 1.02610 0.90834 1.22697 1.01421 0.94378 1.03210 0.92147 0.93473 0.91690 0.91991 0.90387 0.83927 0.91086 0.91717 0.93900 0.94533 1.00015 1.00027 0.92091 0.88325 0.88041 0.87618 0.90022 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.68 71.98 0.70 -1.75 16 2 C -0.15 -2.66 5.23 30.60 0.16 -2.50 16 3 C 0.12 2.76 2.71 44.92 0.12 2.88 16 4 H 0.08 1.80 7.95 -2.39 -0.02 1.78 16 5 N -0.69 -19.87 6.30 -491.56 -3.10 -22.97 16 6 C 0.08 2.29 5.35 86.30 0.46 2.75 16 7 C 0.06 2.13 6.26 71.98 0.45 2.58 16 8 O -0.39 -20.12 10.27 -148.98 -1.53 -21.65 16 9 C 0.21 12.19 5.69 71.24 0.41 12.60 16 10 C -0.54 -33.59 9.43 25.60 0.24 -33.35 16 11 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 12 C 0.01 0.35 5.46 84.66 0.46 0.81 16 13 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 14 Si 0.98 45.65 29.54 68.60 2.03 47.67 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C -0.15 -3.54 3.88 -10.79 -0.04 -3.58 16 19 C -0.16 -3.18 10.18 30.62 0.31 -2.87 16 20 C -0.18 -4.96 10.22 30.62 0.31 -4.65 16 21 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.05 0.83 6.83 -2.39 -0.02 0.81 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 1.14 6.31 -2.39 -0.02 1.12 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.34 9.23 7.27 -89.69 -0.65 8.57 16 27 H 0.07 2.26 6.54 -2.39 -0.02 2.24 16 28 H 0.07 1.54 6.53 -2.39 -0.02 1.53 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 31 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 34 H 0.10 2.28 7.65 -2.39 -0.02 2.26 16 35 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.12 309.52 1.63 -66.49 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.36 Total: 14.63 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.58 Total: -27.08 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.81 Total: -80.06 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.53 Total: -21.65 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.12 1.63 -66.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324080390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.772 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds