Wall clock time and date at job start Sun Mar 29 2020 21:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 C 1.53008 * 109.47059 * 240.00075 * 2 1 3 5 5 O 1.42903 * 109.47153 * 120.00656 * 2 1 3 6 6 C 1.42894 * 114.00149 * 59.08600 * 5 2 1 7 7 C 1.53346 * 109.41910 * 251.42889 * 6 5 2 8 8 C 1.53200 * 109.15067 * 178.67457 * 7 6 5 9 9 N 1.46925 * 108.88802 * 54.57900 * 8 7 6 10 10 C 1.36946 * 120.62926 * 126.30117 * 9 8 7 11 11 H 1.07996 * 119.99593 * 331.59466 * 10 9 8 12 12 C 1.38811 * 119.99883 * 151.59683 * 10 9 8 13 13 N 1.31614 * 119.99961 * 161.76097 * 12 10 9 14 14 Si 1.86804 * 120.00141 * 341.76445 * 12 10 9 15 15 H 1.48503 * 109.47071 * 95.37194 * 14 12 10 16 16 H 1.48497 * 109.47011 * 215.37001 * 14 12 10 17 17 H 1.48495 * 109.47000 * 335.37305 * 14 12 10 18 18 C 1.46929 * 118.74097 * 306.31924 * 9 8 7 19 19 C 1.53046 * 109.45880 * 131.30298 * 6 5 2 20 20 H 1.08999 * 109.46945 * 297.77917 * 1 2 3 21 21 H 1.09004 * 109.47168 * 57.77356 * 1 2 3 22 22 H 1.09000 * 109.47224 * 177.77238 * 1 2 3 23 23 H 1.09003 * 109.47260 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46990 * 300.00312 * 3 2 1 25 25 H 1.09000 * 109.46880 * 60.00198 * 3 2 1 26 26 H 1.08996 * 109.47259 * 300.00308 * 4 2 1 27 27 H 1.08995 * 109.46628 * 60.00159 * 4 2 1 28 28 H 1.09003 * 109.47137 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.46170 * 11.32908 * 6 5 2 30 30 H 1.08999 * 109.68332 * 58.71329 * 7 6 5 31 31 H 1.09005 * 109.47870 * 298.51290 * 7 6 5 32 32 H 1.08997 * 109.58765 * 294.72222 * 8 7 6 33 33 H 1.09002 * 109.58646 * 174.43654 * 8 7 6 34 34 H 0.96997 * 120.00401 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.58576 * 173.39935 * 18 9 8 36 36 H 1.08998 * 109.58575 * 293.68063 * 18 9 8 37 37 H 1.08993 * 109.49815 * 61.43512 * 19 6 5 38 38 H 1.09002 * 109.52385 * 301.35217 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6738 1.1667 6 6 1.5678 -2.0295 1.2748 7 6 0.5334 -2.1425 2.4012 8 6 0.0431 -3.5912 2.4898 9 7 1.2045 -4.4778 2.6436 10 6 1.2671 -5.3726 3.6785 11 1 0.7586 -5.1602 4.6073 12 6 1.9840 -6.5523 3.5336 13 7 2.3508 -7.2344 4.5977 14 14 2.4283 -7.1719 1.8282 15 1 3.7994 -6.7206 1.4792 16 1 2.3764 -8.6559 1.8116 17 1 1.4623 -6.6316 0.8381 18 6 2.2978 -4.3860 1.6663 19 6 2.7659 -2.9296 1.5855 20 1 -0.3633 0.4790 0.9092 21 1 -0.3634 0.5480 -0.8694 22 1 -0.3634 -1.0269 -0.0399 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 -1.7489 -1.2494 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2491 29 1 1.1142 -2.3405 0.3337 30 1 -0.3104 -1.4850 2.1921 31 1 0.9932 -1.8555 3.3470 32 1 -0.4966 -3.8506 1.5791 33 1 -0.6173 -3.7015 3.3499 34 1 2.8521 -8.0586 4.4965 35 1 3.1263 -5.0190 1.9843 36 1 1.9426 -4.7127 0.6890 37 1 3.2047 -2.6351 2.5387 38 1 3.5107 -2.8302 0.7959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336578153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:14 Heat of formation + Delta-G solvation = -55.328164 kcal Electronic energy + Delta-G solvation = -17007.384598 eV Core-core repulsion = 14463.416182 eV Total energy + Delta-G solvation = -2543.968416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61147 -38.52555 -35.07416 -33.86054 -32.02126 -31.85418 -28.33430 -28.22488 -26.67575 -24.40353 -23.51692 -21.14164 -20.78714 -18.87581 -17.63665 -17.17328 -16.16594 -15.95844 -15.83511 -15.30691 -14.75795 -14.72088 -14.48284 -14.23834 -13.83674 -13.56258 -13.15388 -13.01573 -12.83221 -12.70441 -12.62271 -12.54255 -12.49774 -12.14741 -12.03015 -11.63784 -11.48626 -11.41288 -11.09074 -10.77605 -10.30018 -8.96426 -8.17395 -5.52387 1.29387 1.39940 1.49444 2.40650 2.72674 3.04347 3.33383 3.85032 3.91148 3.99157 4.07064 4.15903 4.21214 4.31874 4.47231 4.51088 4.66084 4.69157 4.72748 4.76435 4.84469 4.91913 4.94011 4.96630 5.03536 5.08146 5.11172 5.21307 5.24808 5.37718 5.40145 5.51401 5.85660 6.11375 6.48879 6.89434 7.59590 8.00207 9.02573 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046480 B = 0.007370 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.263475 B = 3798.367149 C = 4028.030869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.390 6.390 6 C 0.105 3.895 7 C -0.137 4.137 8 C 0.146 3.854 9 N -0.622 5.622 10 C -0.251 4.251 11 H 0.050 0.950 12 C -0.037 4.037 13 N -0.960 5.960 14 Si 0.950 3.050 15 H -0.277 1.277 16 H -0.309 1.309 17 H -0.253 1.253 18 C 0.124 3.876 19 C -0.130 4.130 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 15.928 -14.250 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.053 3.947 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.311 6.311 6 C 0.048 3.952 7 C -0.176 4.176 8 C 0.021 3.979 9 N -0.347 5.347 10 C -0.381 4.381 11 H 0.068 0.932 12 C -0.231 4.231 13 N -0.606 5.606 14 Si 0.778 3.222 15 H -0.204 1.204 16 H -0.238 1.238 17 H -0.177 1.177 18 C -0.001 4.001 19 C -0.169 4.169 20 H 0.079 0.921 21 H 0.103 0.897 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.564 15.904 -14.059 21.381 hybrid contribution 0.297 -1.005 -0.128 1.056 sum -2.266 14.899 -14.187 20.697 Atomic orbital electron populations 1.22488 0.94902 1.02568 1.03290 1.21824 0.93990 0.93722 0.85130 1.21762 1.01556 0.92610 1.03145 1.22459 1.01888 1.00836 0.98220 1.87985 1.73997 1.24672 1.44399 1.21874 0.93703 0.81673 0.97968 1.22408 0.99016 0.97319 0.98841 1.21080 0.88455 0.88632 0.99737 1.44507 1.17705 1.42256 1.30196 1.18879 1.30203 0.97166 0.91859 0.93226 1.25972 0.99927 0.96753 1.00484 1.69951 1.41894 1.18406 1.30352 0.85860 0.78590 0.75819 0.81929 1.20385 1.23823 1.17670 1.21391 0.90681 0.95590 0.92415 1.22144 0.98215 0.94848 1.01698 0.92139 0.89720 0.92658 0.92449 0.89012 0.92350 0.92855 0.89552 0.92290 0.90751 0.89625 0.93481 0.94055 0.92367 0.92907 0.93163 0.94094 0.93188 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 7.49 71.98 0.54 -2.75 16 2 C 0.09 1.98 1.11 -10.79 -0.01 1.97 16 3 C -0.13 -2.35 8.84 71.98 0.64 -1.71 16 4 C -0.18 -3.40 8.38 71.98 0.60 -2.80 16 5 O -0.39 -11.55 9.63 -148.98 -1.43 -12.99 16 6 C 0.11 3.32 1.52 30.73 0.05 3.37 16 7 C -0.14 -4.56 5.60 30.78 0.17 -4.39 16 8 C 0.15 5.70 6.51 86.37 0.56 6.26 16 9 N -0.62 -30.02 2.77 -699.08 -1.93 -31.96 16 10 C -0.25 -14.67 10.05 84.03 0.84 -13.83 16 11 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 12 C -0.04 -2.20 5.27 84.86 0.45 -1.75 16 13 N -0.96 -61.58 13.97 21.65 0.30 -61.27 16 14 Si 0.95 47.00 24.34 68.60 1.67 48.67 16 15 H -0.28 -13.05 6.75 99.48 0.67 -12.38 16 16 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 17 H -0.25 -11.70 6.28 99.48 0.62 -11.07 16 18 C 0.12 5.37 4.17 86.36 0.36 5.73 16 19 C -0.13 -4.74 5.73 30.67 0.18 -4.57 16 20 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 21 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.11 6.50 -2.39 -0.02 1.10 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.12 6.34 -2.39 -0.02 1.10 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 2.15 4.99 -2.39 -0.01 2.14 16 30 H 0.09 2.37 6.99 -2.39 -0.02 2.35 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 34 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.05 2.40 4.53 -2.38 -0.01 2.39 16 36 H 0.04 1.66 6.85 -2.39 -0.02 1.65 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -67.25 285.47 3.87 -63.38 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.89 Total: 8.64 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.38 Total: -14.47 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -1.63 Total: -93.23 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.43 Total: -12.99 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Total: -67.25 3.87 -63.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336578153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.050 kcal (2) G-P(sol) polarization free energy of solvation -67.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds