Wall clock time and date at job start Sun Mar 29 2020 22:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.43559 * 2 1 4 4 C 1.54264 * 110.49014 * 237.45706 * 2 1 3 5 5 C 1.53866 * 106.60228 * 217.71034 * 4 2 1 6 6 C 1.54265 * 106.59784 * 0.02562 * 5 4 2 7 7 C 1.54887 * 104.19777 * 23.60908 * 6 5 4 8 8 H 1.09002 * 110.75484 * 80.36636 * 7 6 5 9 9 N 1.46897 * 110.75767 * 203.73951 * 7 6 5 10 10 C 1.46893 * 111.00476 * 268.32503 * 9 7 6 11 11 C 1.52994 * 109.47428 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.47107 * 65.00278 * 11 10 9 13 13 C 1.42901 * 114.00240 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47135 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99652 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99935 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99824 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99960 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47234 * 90.00406 * 18 16 14 20 20 H 1.48504 * 109.47158 * 210.00374 * 18 16 14 21 21 H 1.48498 * 109.47072 * 330.00073 * 18 16 14 22 22 H 1.09002 * 109.47153 * 181.08609 * 1 2 3 23 23 H 1.09001 * 109.46832 * 61.08800 * 1 2 3 24 24 H 1.09004 * 109.47261 * 301.08782 * 1 2 3 25 25 H 1.08995 * 110.03267 * 337.00157 * 4 2 1 26 26 H 1.09009 * 110.02918 * 98.37645 * 4 2 1 27 27 H 1.09007 * 110.03015 * 119.28349 * 5 4 2 28 28 H 1.09000 * 110.03840 * 240.71156 * 5 4 2 29 29 H 1.09005 * 110.48861 * 142.28644 * 6 5 4 30 30 H 1.09001 * 110.48719 * 264.79615 * 6 5 4 31 31 H 1.00898 * 111.00066 * 32.28428 * 9 7 6 32 32 H 1.09000 * 109.47525 * 300.00431 * 10 9 7 33 33 H 1.09000 * 109.46694 * 60.00156 * 10 9 7 34 34 H 1.09001 * 109.47411 * 185.00495 * 11 10 9 35 35 H 1.08998 * 109.47205 * 305.00343 * 11 10 9 36 36 H 1.09004 * 109.46896 * 299.99882 * 13 12 11 37 37 H 1.08990 * 109.47192 * 59.99860 * 13 12 11 38 38 H 0.97010 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7773 -1.2181 5 6 3.3166 -1.5395 -0.7359 6 6 3.4903 -1.1993 0.7587 7 6 2.0716 -0.7843 1.2213 8 1 1.4576 -1.6628 1.4197 9 7 2.1427 0.0814 2.4059 10 6 2.0694 -0.7098 3.6414 11 6 2.1470 0.2243 4.8506 12 8 0.9950 1.0695 4.8742 13 6 0.9690 1.9861 5.9702 14 6 -0.2827 2.8221 5.8964 15 1 -0.9876 2.6690 5.0925 16 6 -0.5274 3.7830 6.8544 17 7 -1.6195 4.5129 6.7896 18 14 0.6921 4.0482 8.2442 19 1 1.6942 5.0654 7.8362 20 1 -0.0297 4.5213 9.4527 21 1 1.3815 2.7686 8.5487 22 1 -0.3633 -1.0275 0.0195 23 1 -0.3633 0.4969 -0.8996 24 1 -0.3634 0.5307 0.8801 25 1 1.3177 -1.4802 -1.5759 26 1 2.3404 -0.0832 -2.0140 27 1 3.1692 -2.6125 -0.8596 28 1 4.1929 -1.2155 -1.2973 29 1 3.8312 -2.0744 1.3121 30 1 4.1910 -0.3737 0.8831 31 1 2.9764 0.6494 2.3892 32 1 1.1282 -1.2591 3.6659 33 1 2.9015 -1.4132 3.6721 34 1 2.1822 -0.3676 5.7653 35 1 3.0457 0.8368 4.7794 36 1 0.9800 1.4311 6.9083 37 1 1.8432 2.6352 5.9219 38 1 -1.7919 5.1887 7.4638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378789314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:55 Heat of formation + Delta-G solvation = -67.376998 kcal Electronic energy + Delta-G solvation = -15852.032352 eV Core-core repulsion = 13307.541460 eV Total energy + Delta-G solvation = -2544.490893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.93671 -36.94914 -34.37343 -32.52169 -31.20511 -29.49488 -27.58516 -26.10162 -24.31912 -21.81976 -21.60602 -20.61942 -19.66768 -16.83282 -16.13171 -15.79582 -15.30595 -14.92712 -14.44011 -14.02687 -13.85469 -13.36008 -13.21230 -12.76148 -12.59882 -12.41559 -11.96475 -11.75569 -11.51775 -11.25707 -10.95511 -10.86379 -10.75737 -10.65582 -10.60173 -10.44844 -10.20336 -9.81799 -9.11107 -8.77872 -8.39576 -8.06957 -6.06198 -4.04337 3.27742 3.34414 3.36076 4.20961 4.39855 4.54964 4.60369 4.70985 4.85421 5.25083 5.25855 5.28987 5.37525 5.45611 5.53593 5.59939 5.61875 5.64303 5.76523 5.84952 5.88360 5.95187 5.98726 6.07095 6.11559 6.20654 6.24383 6.45324 6.55700 6.66177 7.05978 7.27533 7.60256 7.66245 8.11656 8.74846 9.07426 9.53712 11.07064 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042538 B = 0.004925 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.082620 B = 5684.262426 C = 6123.174718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.156 4.156 7 C 0.088 3.912 8 H 0.082 0.918 9 N -0.667 5.667 10 C 0.066 3.934 11 C 0.060 3.940 12 O -0.364 6.364 13 C 0.167 3.833 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.339 0.661 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.000 1.000 37 H -0.004 1.004 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 -12.297 -12.260 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.196 4.196 7 C -0.022 4.022 8 H 0.100 0.900 9 N -0.297 5.297 10 C -0.063 4.063 11 C -0.018 4.018 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.552 4.552 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.014 0.986 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.982 -12.001 -12.280 19.861 hybrid contribution 1.780 -0.148 1.036 2.065 sum 11.762 -12.149 -11.244 20.307 Atomic orbital electron populations 1.21734 0.94555 1.01262 1.02175 1.21903 0.96126 0.99379 0.92876 0.90435 1.22235 0.97025 0.98903 0.97944 1.22017 0.98121 0.99951 0.95724 1.23109 0.98786 1.01193 0.96482 1.22672 0.94297 0.94929 0.90340 0.90014 1.60291 1.45443 1.23456 1.00476 1.21974 1.00746 0.94426 0.89154 1.22324 0.90487 0.92996 0.95975 1.88024 1.39953 1.50564 1.49744 1.20587 0.97442 0.87891 0.84915 1.20908 1.04939 1.16886 1.12501 0.89895 1.24765 0.95409 0.95314 0.97520 1.69880 1.25492 1.22683 1.35523 0.86857 0.81670 0.78970 0.82263 1.19991 1.20847 1.19198 0.93415 0.93352 0.91154 0.91849 0.92032 0.92137 0.92175 0.92127 0.91547 0.84214 0.90339 0.94890 0.94148 0.94713 0.98276 0.98616 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.11 37.16 0.34 -1.40 16 2 C -0.08 -0.98 3.15 -88.95 -0.28 -1.26 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.12 -1.17 6.37 -25.62 -0.16 -1.33 16 5 C -0.12 -1.06 6.80 -25.62 -0.17 -1.24 16 6 C -0.16 -1.54 6.40 -25.07 -0.16 -1.70 16 7 C 0.09 1.05 2.65 -65.71 -0.17 0.88 16 8 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 9 N -0.67 -9.65 6.34 -104.62 -0.66 -10.31 16 10 C 0.07 0.96 5.94 -3.83 -0.02 0.94 16 11 C 0.06 1.07 6.22 37.15 0.23 1.30 16 12 O -0.36 -8.71 10.27 -35.23 -0.36 -9.08 16 13 C 0.17 4.36 4.76 36.01 0.17 4.53 16 14 C -0.51 -15.67 9.99 -34.44 -0.34 -16.02 16 15 H 0.08 2.77 8.06 -52.49 -0.42 2.35 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 18 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.57 7.84 -51.93 -0.41 0.17 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.65 7.78 -51.93 -0.40 0.25 16 31 H 0.34 4.62 8.21 -39.29 -0.32 4.29 16 32 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 37 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 38 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -31.93 305.99 -7.95 -39.87 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.96 Total: -1.54 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.68 Total: -13.26 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.11 Total: -37.70 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.36 Total: -9.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.93 -7.95 -39.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378789314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.504 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds