Wall clock time and date at job start Sun Mar 29 2020 22:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.43559 * 2 1 4 4 C 1.54264 * 110.49014 * 237.45706 * 2 1 3 5 5 C 1.53866 * 106.60228 * 217.71034 * 4 2 1 6 6 C 1.54265 * 106.59784 * 0.02562 * 5 4 2 7 7 C 1.54887 * 104.19777 * 23.60908 * 6 5 4 8 8 H 1.09002 * 110.75484 * 80.36636 * 7 6 5 9 9 N 1.46897 * 110.75767 * 203.73951 * 7 6 5 10 10 C 1.46893 * 111.00476 * 268.32503 * 9 7 6 11 11 C 1.52994 * 109.47428 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.47107 * 65.00278 * 11 10 9 13 13 C 1.42901 * 114.00240 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47135 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99652 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99935 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99824 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99960 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47234 * 90.00406 * 18 16 14 20 20 H 1.48504 * 109.47158 * 210.00374 * 18 16 14 21 21 H 1.48498 * 109.47072 * 330.00073 * 18 16 14 22 22 H 1.09002 * 109.47153 * 181.08609 * 1 2 3 23 23 H 1.09001 * 109.46832 * 61.08800 * 1 2 3 24 24 H 1.09004 * 109.47261 * 301.08782 * 1 2 3 25 25 H 1.08995 * 110.03267 * 337.00157 * 4 2 1 26 26 H 1.09009 * 110.02918 * 98.37645 * 4 2 1 27 27 H 1.09007 * 110.03015 * 119.28349 * 5 4 2 28 28 H 1.09000 * 110.03840 * 240.71156 * 5 4 2 29 29 H 1.09005 * 110.48861 * 142.28644 * 6 5 4 30 30 H 1.09001 * 110.48719 * 264.79615 * 6 5 4 31 31 H 1.00898 * 111.00066 * 32.28428 * 9 7 6 32 32 H 1.09000 * 109.47525 * 300.00431 * 10 9 7 33 33 H 1.09000 * 109.46694 * 60.00156 * 10 9 7 34 34 H 1.09001 * 109.47411 * 185.00495 * 11 10 9 35 35 H 1.08998 * 109.47205 * 305.00343 * 11 10 9 36 36 H 1.09004 * 109.46896 * 299.99882 * 13 12 11 37 37 H 1.08990 * 109.47192 * 59.99860 * 13 12 11 38 38 H 0.97010 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7773 -1.2181 5 6 3.3166 -1.5395 -0.7359 6 6 3.4903 -1.1993 0.7587 7 6 2.0716 -0.7843 1.2213 8 1 1.4576 -1.6628 1.4197 9 7 2.1427 0.0814 2.4059 10 6 2.0694 -0.7098 3.6414 11 6 2.1470 0.2243 4.8506 12 8 0.9950 1.0695 4.8742 13 6 0.9690 1.9861 5.9702 14 6 -0.2827 2.8221 5.8964 15 1 -0.9876 2.6690 5.0925 16 6 -0.5274 3.7830 6.8544 17 7 -1.6195 4.5129 6.7896 18 14 0.6921 4.0482 8.2442 19 1 1.6942 5.0654 7.8362 20 1 -0.0297 4.5213 9.4527 21 1 1.3815 2.7686 8.5487 22 1 -0.3633 -1.0275 0.0195 23 1 -0.3633 0.4969 -0.8996 24 1 -0.3634 0.5307 0.8801 25 1 1.3177 -1.4802 -1.5759 26 1 2.3404 -0.0832 -2.0140 27 1 3.1692 -2.6125 -0.8596 28 1 4.1929 -1.2155 -1.2973 29 1 3.8312 -2.0744 1.3121 30 1 4.1910 -0.3737 0.8831 31 1 2.9764 0.6494 2.3892 32 1 1.1282 -1.2591 3.6659 33 1 2.9015 -1.4132 3.6721 34 1 2.1822 -0.3676 5.7653 35 1 3.0457 0.8368 4.7794 36 1 0.9800 1.4311 6.9083 37 1 1.8432 2.6352 5.9219 38 1 -1.7919 5.1887 7.4638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378789314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:55 Heat of formation + Delta-G solvation = -89.645651 kcal Electronic energy + Delta-G solvation = -15852.997994 eV Core-core repulsion = 13307.541460 eV Total energy + Delta-G solvation = -2545.456534 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87761 -38.60273 -35.63685 -34.70844 -32.09433 -30.99165 -29.35895 -27.15232 -25.32406 -23.94422 -22.90442 -21.45415 -20.56945 -19.04005 -17.49949 -17.19057 -16.65993 -16.27991 -16.04647 -15.28091 -14.89059 -14.69831 -14.50068 -14.34977 -13.96312 -13.73858 -13.20081 -13.04074 -12.89237 -12.69614 -12.45102 -12.13573 -11.96138 -11.80536 -11.78523 -11.49547 -11.39184 -11.27775 -11.21022 -10.91151 -10.29286 -9.10649 -8.36108 -6.43809 1.33110 1.36847 1.47712 2.30313 2.96374 3.12151 3.24123 3.72091 3.76316 4.01175 4.24188 4.28125 4.41318 4.49558 4.54341 4.57071 4.59235 4.63219 4.67244 4.72260 4.82602 4.93659 4.99270 5.01951 5.06044 5.11787 5.26477 5.28503 5.36434 5.45131 5.45979 5.57410 5.96564 6.25157 6.56108 6.60949 6.83230 7.21090 8.81484 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042538 B = 0.004925 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.082620 B = 5684.262426 C = 6123.174718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.062 0.938 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.149 4.149 7 C 0.087 3.913 8 H 0.078 0.922 9 N -0.692 5.692 10 C 0.074 3.926 11 C 0.050 3.950 12 O -0.395 6.395 13 C 0.179 3.821 14 C -0.544 4.544 15 H 0.026 0.974 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.958 3.042 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.245 1.245 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.342 0.658 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 -13.453 -11.817 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.188 4.188 7 C -0.023 4.023 8 H 0.096 0.904 9 N -0.323 5.323 10 C -0.055 4.055 11 C -0.027 4.027 12 O -0.314 6.314 13 C 0.103 3.897 14 C -0.582 4.582 15 H 0.045 0.955 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.779 3.221 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.169 1.169 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.703 -13.181 -11.864 21.814 hybrid contribution 0.842 0.194 0.795 1.174 sum 13.545 -12.987 -11.068 21.786 Atomic orbital electron populations 1.21693 0.95561 1.01344 1.00836 1.21915 0.95298 0.99096 0.94341 0.91900 1.22188 0.97552 0.98938 0.96868 1.22018 0.98025 1.00491 0.94942 1.23027 0.96992 1.01524 0.97242 1.22685 0.95895 0.94336 0.89385 0.90425 1.60251 1.46079 1.24645 1.01326 1.21896 1.01483 0.94028 0.88080 1.22710 0.88784 0.92935 0.98240 1.87981 1.43205 1.51165 1.49055 1.20290 0.95307 0.88096 0.86039 1.21181 1.06274 1.19026 1.11721 0.95533 1.25869 0.97749 0.94263 1.00706 1.70044 1.27901 1.23401 1.37042 0.85569 0.78722 0.80079 0.77693 1.18387 1.19770 1.16879 0.92495 0.92404 0.94827 0.91199 0.91330 0.91072 0.91060 0.91174 0.91462 0.83836 0.91676 0.91290 0.92545 0.93290 0.97213 0.97386 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.11 71.98 0.66 -2.85 16 2 C -0.09 -2.02 3.15 -9.71 -0.03 -2.05 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -2.02 6.37 31.31 0.20 -1.82 16 5 C -0.12 -1.74 6.80 31.32 0.21 -1.53 16 6 C -0.15 -2.57 6.40 31.67 0.20 -2.36 16 7 C 0.09 1.99 2.65 46.22 0.12 2.12 16 8 H 0.08 1.83 7.75 -2.39 -0.02 1.81 16 9 N -0.69 -19.71 6.34 -484.91 -3.07 -22.78 16 10 C 0.07 2.06 5.94 86.30 0.51 2.57 16 11 C 0.05 1.71 6.22 71.98 0.45 2.16 16 12 O -0.39 -19.04 10.27 -148.98 -1.53 -20.57 16 13 C 0.18 9.25 4.76 71.24 0.34 9.59 16 14 C -0.54 -34.30 9.99 25.60 0.26 -34.05 16 15 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 16 C 0.01 0.71 5.47 84.66 0.46 1.17 16 17 N -0.94 -60.79 13.96 21.45 0.30 -60.49 16 18 Si 0.96 44.18 27.47 68.60 1.88 46.06 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.07 1.12 7.84 -2.39 -0.02 1.10 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.16 7.78 -2.39 -0.02 1.14 16 31 H 0.34 9.05 8.21 -89.70 -0.74 8.31 16 32 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 37 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 38 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -71.47 305.99 1.17 -70.30 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.21 Total: 14.52 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.38 Total: -27.04 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.77 Total: -83.27 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.53 Total: -20.57 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -71.47 1.17 -70.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378789314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.344 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds