Wall clock time and date at job start Sun Mar 29 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 110.01744 * 2 1 4 4 C 1.54267 * 110.02676 * 238.56092 * 2 1 3 5 5 C 1.54896 * 104.19582 * 217.10648 * 4 2 1 6 6 C 1.54891 * 102.74751 * 37.94002 * 5 4 2 7 7 C 1.53874 * 110.03473 * 121.39792 * 2 1 3 8 8 H 1.09000 * 110.02880 * 238.61628 * 7 2 1 9 9 N 1.46902 * 110.03032 * 359.97438 * 7 2 1 10 10 C 1.46904 * 110.99912 * 195.10706 * 9 7 2 11 11 C 1.53001 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42889 * 109.47362 * 64.99742 * 11 10 9 13 13 C 1.42906 * 114.00126 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47321 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00449 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99653 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47360 * 59.99872 * 18 16 14 20 20 H 1.48503 * 109.46969 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47164 * 299.99536 * 18 16 14 22 22 H 1.09006 * 109.46785 * 305.00141 * 1 2 3 23 23 H 1.09000 * 109.47511 * 65.00434 * 1 2 3 24 24 H 1.09001 * 109.47407 * 185.00936 * 1 2 3 25 25 H 1.09002 * 110.49181 * 335.78233 * 4 2 1 26 26 H 1.09000 * 110.48672 * 98.42948 * 4 2 1 27 27 H 1.09003 * 110.75318 * 279.62824 * 5 4 2 28 28 H 1.08993 * 110.75942 * 156.25985 * 5 4 2 29 29 H 1.08997 * 110.48666 * 203.38037 * 6 5 4 30 30 H 1.09000 * 110.59329 * 80.79588 * 6 5 4 31 31 H 1.00893 * 111.00433 * 319.05664 * 9 7 2 32 32 H 1.09003 * 109.46787 * 299.99948 * 10 9 7 33 33 H 1.08994 * 109.47306 * 59.99989 * 10 9 7 34 34 H 1.09003 * 109.46792 * 185.00339 * 11 10 9 35 35 H 1.09001 * 109.46561 * 304.99337 * 11 10 9 36 36 H 1.08992 * 109.47206 * 300.00182 * 13 12 11 37 37 H 1.09003 * 109.46907 * 59.99915 * 13 12 11 38 38 H 0.97002 * 119.99595 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7560 -1.2366 5 6 3.3136 -1.5012 -0.7187 6 6 2.8874 -1.9404 0.7042 7 6 2.0572 -0.7531 1.2339 8 1 2.6861 -0.0944 1.8328 9 7 0.9329 -1.2452 2.0414 10 6 1.3824 -1.6445 3.3817 11 6 0.1866 -2.1508 4.1909 12 8 -0.3230 -3.3439 3.5920 13 6 -1.4475 -3.9023 4.2745 14 6 -1.9000 -5.1496 3.5601 15 1 -1.3807 -5.4830 2.6738 16 6 -2.9772 -5.8654 4.0380 17 7 -3.6100 -5.4593 5.1170 18 14 -3.5377 -7.4120 3.1529 19 1 -2.4299 -8.4007 3.1341 20 1 -4.7064 -7.9922 3.8621 21 1 -3.9223 -7.0728 1.7592 22 1 -0.3633 0.5895 0.8419 23 1 -0.3634 0.4342 -0.9314 24 1 -0.3634 -1.0237 0.0897 25 1 1.3141 -1.4667 -1.5961 26 1 2.3296 -0.0544 -2.0255 27 1 4.1709 -0.8295 -0.6750 28 1 3.5324 -2.3685 -1.3414 29 1 3.7637 -2.1033 1.3317 30 1 2.2777 -2.8429 0.6603 31 1 0.1984 -0.5557 2.0969 32 1 2.1241 -2.4386 3.2946 33 1 1.8262 -0.7866 3.8867 34 1 0.5028 -2.3633 5.2122 35 1 -0.5926 -1.3888 4.2029 36 1 -1.1648 -4.1513 5.2973 37 1 -2.2608 -3.1768 4.2887 38 1 -4.3676 -5.9631 5.4535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378789315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:57 Heat of formation + Delta-G solvation = -63.166547 kcal Electronic energy + Delta-G solvation = -16018.407779 eV Core-core repulsion = 13474.099465 eV Total energy + Delta-G solvation = -2544.308314 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.03980 -36.71643 -34.17454 -32.56811 -31.28485 -29.13419 -26.98258 -25.74267 -24.73064 -22.25350 -21.63472 -20.50134 -18.90283 -16.41954 -16.13253 -15.81290 -15.37823 -14.85600 -14.57089 -14.17666 -13.64592 -13.56790 -13.13779 -12.66664 -12.12526 -12.07212 -11.87381 -11.21070 -11.12368 -11.00926 -10.85211 -10.77136 -10.72412 -10.60976 -10.58515 -10.47785 -10.30559 -9.90301 -9.03549 -8.73606 -8.09766 -8.03934 -6.04703 -4.05490 3.36739 3.38777 3.43323 4.35929 4.41231 4.56219 4.64237 4.94044 4.98399 5.31689 5.32971 5.40453 5.46725 5.56916 5.57966 5.62693 5.72711 5.74353 5.91233 5.92027 6.02539 6.07117 6.12965 6.16037 6.21231 6.26649 6.38293 6.51131 6.54464 7.17511 7.36445 7.50668 7.68341 7.87138 8.23877 8.69393 9.09261 9.59114 11.07007 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.005327 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.129216 B = 5254.925822 C = 5590.769033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.116 4.116 7 C 0.085 3.915 8 H 0.034 0.966 9 N -0.670 5.670 10 C 0.063 3.937 11 C 0.066 3.934 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.341 0.659 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.423 11.471 -8.467 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.025 4.025 8 H 0.052 0.948 9 N -0.304 5.304 10 C -0.066 4.066 11 C -0.013 4.013 12 O -0.299 6.299 13 C 0.119 3.881 14 C -0.548 4.548 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.362 10.705 -8.747 17.894 hybrid contribution -0.354 0.263 0.471 0.645 sum 11.008 10.968 -8.276 17.605 Atomic orbital electron populations 1.21810 0.94445 1.03684 1.00466 1.21827 0.96594 0.98235 0.94627 0.91727 1.22394 0.97502 0.98855 0.96616 1.22450 0.97324 0.99690 0.96751 1.22442 0.98693 0.99148 0.95117 1.22153 0.91846 0.94760 0.93703 0.94776 1.60683 1.10287 1.45560 1.13842 1.22007 0.97411 0.98527 0.88692 1.22223 0.94595 0.89540 0.94897 1.87954 1.49759 1.38351 1.53797 1.20171 0.82664 0.93149 0.92088 1.21033 1.13685 1.08042 1.12081 0.91578 1.24945 0.96117 0.98272 0.95218 1.69962 1.21556 1.39986 1.22555 0.86407 0.77997 0.82504 0.79622 1.20063 1.21231 1.20018 0.93196 0.93219 0.90115 0.91062 0.92247 0.92107 0.91635 0.92504 0.89701 0.83782 0.90498 0.95178 0.94362 0.94952 0.98069 0.97949 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.77 37.16 0.29 -1.41 16 2 C -0.09 -1.04 3.50 -89.50 -0.31 -1.35 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -1.22 6.36 -25.07 -0.16 -1.37 16 5 C -0.12 -1.29 6.91 -24.73 -0.17 -1.46 16 6 C -0.12 -1.46 6.00 -25.07 -0.15 -1.61 16 7 C 0.09 1.07 3.21 -66.60 -0.21 0.86 16 8 H 0.03 0.41 7.97 -51.93 -0.41 0.00 16 9 N -0.67 -10.11 5.20 -105.54 -0.55 -10.65 16 10 C 0.06 0.98 5.90 -3.82 -0.02 0.96 16 11 C 0.07 1.25 6.22 37.16 0.23 1.48 16 12 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 13 C 0.19 5.47 5.69 36.00 0.20 5.68 16 14 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 18 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.05 0.55 7.03 -51.93 -0.36 0.19 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.14 7.49 -51.93 -0.39 0.75 16 25 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.28 8.05 -51.93 -0.42 0.87 16 31 H 0.34 4.90 6.14 -39.30 -0.24 4.66 16 32 H 0.08 1.25 7.77 -51.93 -0.40 0.84 16 33 H 0.03 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -31.33 304.01 -8.17 -39.50 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.83 Total: -1.71 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.73 Total: -12.45 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.19 Total: -37.38 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.33 -8.17 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378789315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.668 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds