Wall clock time and date at job start Sun Mar 29 2020 22:09:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08991 * 110.01744 * 2 1
4 4 C 1.54267 * 110.02676 * 238.56092 * 2 1 3
5 5 C 1.54896 * 104.19582 * 217.10648 * 4 2 1
6 6 C 1.54891 * 102.74751 * 37.94002 * 5 4 2
7 7 C 1.53874 * 110.03473 * 121.39792 * 2 1 3
8 8 H 1.09000 * 110.02880 * 238.61628 * 7 2 1
9 9 N 1.46902 * 110.03032 * 359.97438 * 7 2 1
10 10 C 1.46904 * 110.99912 * 195.10706 * 9 7 2
11 11 C 1.53001 * 109.47111 * 180.02562 * 10 9 7
12 12 O 1.42889 * 109.47362 * 64.99742 * 11 10 9
13 13 C 1.42906 * 114.00126 * 179.97438 * 12 11 10
14 14 C 1.50697 * 109.47321 * 179.97438 * 13 12 11
15 15 H 1.08001 * 120.00449 * 0.02562 * 14 13 12
16 16 C 1.37882 * 120.00041 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99653 * 0.02562 * 16 14 13
18 18 Si 1.86797 * 119.99906 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47360 * 59.99872 * 18 16 14
20 20 H 1.48503 * 109.46969 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.47164 * 299.99536 * 18 16 14
22 22 H 1.09006 * 109.46785 * 305.00141 * 1 2 3
23 23 H 1.09000 * 109.47511 * 65.00434 * 1 2 3
24 24 H 1.09001 * 109.47407 * 185.00936 * 1 2 3
25 25 H 1.09002 * 110.49181 * 335.78233 * 4 2 1
26 26 H 1.09000 * 110.48672 * 98.42948 * 4 2 1
27 27 H 1.09003 * 110.75318 * 279.62824 * 5 4 2
28 28 H 1.08993 * 110.75942 * 156.25985 * 5 4 2
29 29 H 1.08997 * 110.48666 * 203.38037 * 6 5 4
30 30 H 1.09000 * 110.59329 * 80.79588 * 6 5 4
31 31 H 1.00893 * 111.00433 * 319.05664 * 9 7 2
32 32 H 1.09003 * 109.46787 * 299.99948 * 10 9 7
33 33 H 1.08994 * 109.47306 * 59.99989 * 10 9 7
34 34 H 1.09003 * 109.46792 * 185.00339 * 11 10 9
35 35 H 1.09001 * 109.46561 * 304.99337 * 11 10 9
36 36 H 1.08992 * 109.47206 * 300.00182 * 13 12 11
37 37 H 1.09003 * 109.46907 * 59.99915 * 13 12 11
38 38 H 0.97002 * 119.99595 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9031 1.0241 0.0000
4 6 2.0583 -0.7560 -1.2366
5 6 3.3136 -1.5012 -0.7187
6 6 2.8874 -1.9404 0.7042
7 6 2.0572 -0.7531 1.2339
8 1 2.6861 -0.0944 1.8328
9 7 0.9329 -1.2452 2.0414
10 6 1.3824 -1.6445 3.3817
11 6 0.1866 -2.1508 4.1909
12 8 -0.3230 -3.3439 3.5920
13 6 -1.4475 -3.9023 4.2745
14 6 -1.9000 -5.1496 3.5601
15 1 -1.3807 -5.4830 2.6738
16 6 -2.9772 -5.8654 4.0380
17 7 -3.6100 -5.4593 5.1170
18 14 -3.5377 -7.4120 3.1529
19 1 -2.4299 -8.4007 3.1341
20 1 -4.7064 -7.9922 3.8621
21 1 -3.9223 -7.0728 1.7592
22 1 -0.3633 0.5895 0.8419
23 1 -0.3634 0.4342 -0.9314
24 1 -0.3634 -1.0237 0.0897
25 1 1.3141 -1.4667 -1.5961
26 1 2.3296 -0.0544 -2.0255
27 1 4.1709 -0.8295 -0.6750
28 1 3.5324 -2.3685 -1.3414
29 1 3.7637 -2.1033 1.3317
30 1 2.2777 -2.8429 0.6603
31 1 0.1984 -0.5557 2.0969
32 1 2.1241 -2.4386 3.2946
33 1 1.8262 -0.7866 3.8867
34 1 0.5028 -2.3633 5.2122
35 1 -0.5926 -1.3888 4.2029
36 1 -1.1648 -4.1513 5.2973
37 1 -2.2608 -3.1768 4.2887
38 1 -4.3676 -5.9631 5.4535
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000378789315.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:09:57
Heat of formation + Delta-G solvation = -63.166547 kcal
Electronic energy + Delta-G solvation = -16018.407779 eV
Core-core repulsion = 13474.099465 eV
Total energy + Delta-G solvation = -2544.308314 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.03980 -36.71643 -34.17454 -32.56811 -31.28485 -29.13419 -26.98258 -25.74267
-24.73064 -22.25350 -21.63472 -20.50134 -18.90283 -16.41954 -16.13253 -15.81290
-15.37823 -14.85600 -14.57089 -14.17666 -13.64592 -13.56790 -13.13779 -12.66664
-12.12526 -12.07212 -11.87381 -11.21070 -11.12368 -11.00926 -10.85211 -10.77136
-10.72412 -10.60976 -10.58515 -10.47785 -10.30559 -9.90301 -9.03549 -8.73606
-8.09766 -8.03934 -6.04703 -4.05490 3.36739 3.38777 3.43323 4.35929
4.41231 4.56219 4.64237 4.94044 4.98399 5.31689 5.32971 5.40453
5.46725 5.56916 5.57966 5.62693 5.72711 5.74353 5.91233 5.92027
6.02539 6.07117 6.12965 6.16037 6.21231 6.26649 6.38293 6.51131
6.54464 7.17511 7.36445 7.50668 7.68341 7.87138 8.23877 8.69393
9.09261 9.59114 11.07007
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.031343 B = 0.005327 C = 0.005007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.129216 B = 5254.925822 C = 5590.769033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.094 4.094
3 H 0.064 0.936
4 C -0.116 4.116
5 C -0.124 4.124
6 C -0.116 4.116
7 C 0.085 3.915
8 H 0.034 0.966
9 N -0.670 5.670
10 C 0.063 3.937
11 C 0.066 3.934
12 O -0.379 6.379
13 C 0.194 3.806
14 C -0.510 4.510
15 H 0.066 0.934
16 C 0.055 3.945
17 N -0.901 5.901
18 Si 0.907 3.093
19 H -0.275 1.275
20 H -0.287 1.287
21 H -0.275 1.275
22 H 0.049 0.951
23 H 0.049 0.951
24 H 0.080 0.920
25 H 0.071 0.929
26 H 0.059 0.941
27 H 0.060 0.940
28 H 0.065 0.935
29 H 0.056 0.944
30 H 0.084 0.916
31 H 0.341 0.659
32 H 0.077 0.923
33 H 0.030 0.970
34 H 0.038 0.962
35 H 0.032 0.968
36 H 0.002 0.998
37 H 0.003 0.997
38 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.423 11.471 -8.467 18.269
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.113 4.113
3 H 0.083 0.917
4 C -0.154 4.154
5 C -0.162 4.162
6 C -0.154 4.154
7 C -0.025 4.025
8 H 0.052 0.948
9 N -0.304 5.304
10 C -0.066 4.066
11 C -0.013 4.013
12 O -0.299 6.299
13 C 0.119 3.881
14 C -0.548 4.548
15 H 0.084 0.916
16 C -0.146 4.146
17 N -0.541 5.541
18 Si 0.735 3.265
19 H -0.201 1.201
20 H -0.212 1.212
21 H -0.200 1.200
22 H 0.068 0.932
23 H 0.068 0.932
24 H 0.099 0.901
25 H 0.089 0.911
26 H 0.078 0.922
27 H 0.079 0.921
28 H 0.084 0.916
29 H 0.075 0.925
30 H 0.103 0.897
31 H 0.162 0.838
32 H 0.095 0.905
33 H 0.048 0.952
34 H 0.056 0.944
35 H 0.050 0.950
36 H 0.019 0.981
37 H 0.021 0.979
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 11.362 10.705 -8.747 17.894
hybrid contribution -0.354 0.263 0.471 0.645
sum 11.008 10.968 -8.276 17.605
Atomic orbital electron populations
1.21810 0.94445 1.03684 1.00466 1.21827 0.96594 0.98235 0.94627
0.91727 1.22394 0.97502 0.98855 0.96616 1.22450 0.97324 0.99690
0.96751 1.22442 0.98693 0.99148 0.95117 1.22153 0.91846 0.94760
0.93703 0.94776 1.60683 1.10287 1.45560 1.13842 1.22007 0.97411
0.98527 0.88692 1.22223 0.94595 0.89540 0.94897 1.87954 1.49759
1.38351 1.53797 1.20171 0.82664 0.93149 0.92088 1.21033 1.13685
1.08042 1.12081 0.91578 1.24945 0.96117 0.98272 0.95218 1.69962
1.21556 1.39986 1.22555 0.86407 0.77997 0.82504 0.79622 1.20063
1.21231 1.20018 0.93196 0.93219 0.90115 0.91062 0.92247 0.92107
0.91635 0.92504 0.89701 0.83782 0.90498 0.95178 0.94362 0.94952
0.98069 0.97949 0.92717
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.70 7.77 37.16 0.29 -1.41 16
2 C -0.09 -1.04 3.50 -89.50 -0.31 -1.35 16
3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
4 C -0.12 -1.22 6.36 -25.07 -0.16 -1.37 16
5 C -0.12 -1.29 6.91 -24.73 -0.17 -1.46 16
6 C -0.12 -1.46 6.00 -25.07 -0.15 -1.61 16
7 C 0.09 1.07 3.21 -66.60 -0.21 0.86 16
8 H 0.03 0.41 7.97 -51.93 -0.41 0.00 16
9 N -0.67 -10.11 5.20 -105.54 -0.55 -10.65 16
10 C 0.06 0.98 5.90 -3.82 -0.02 0.96 16
11 C 0.07 1.25 6.22 37.16 0.23 1.48 16
12 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16
13 C 0.19 5.47 5.69 36.00 0.20 5.68 16
14 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16
15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16
16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
17 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16
18 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16
19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
22 H 0.05 0.55 7.03 -51.93 -0.36 0.19 16
23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
24 H 0.08 1.14 7.49 -51.93 -0.39 0.75 16
25 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16
26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.08 1.28 8.05 -51.93 -0.42 0.87 16
31 H 0.34 4.90 6.14 -39.30 -0.24 4.66 16
32 H 0.08 1.25 7.77 -51.93 -0.40 0.84 16
33 H 0.03 0.40 8.09 -51.93 -0.42 -0.02 16
34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16
36 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16
37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16
38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
LS Contribution 304.01 15.07 4.58 4.58
Total: -1.00 -31.33 304.01 -8.17 -39.50
By element:
Atomic # 1 Polarization: 5.12 SS G_CDS: -6.83 Total: -1.71 kcal
Atomic # 6 Polarization: -11.72 SS G_CDS: -0.73 Total: -12.45 kcal
Atomic # 7 Polarization: -37.57 SS G_CDS: 0.19 Total: -37.38 kcal
Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -31.33 -8.17 -39.50 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000378789315.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.668 kcal
(2) G-P(sol) polarization free energy of solvation -31.325 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.993 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds