Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 110.01744 * 2 1 4 4 C 1.54267 * 110.02676 * 238.56092 * 2 1 3 5 5 C 1.54896 * 104.19582 * 217.10648 * 4 2 1 6 6 C 1.54891 * 102.74751 * 37.94002 * 5 4 2 7 7 C 1.53874 * 110.03473 * 121.39792 * 2 1 3 8 8 H 1.09000 * 110.02880 * 238.61628 * 7 2 1 9 9 N 1.46902 * 110.03032 * 359.97438 * 7 2 1 10 10 C 1.46904 * 110.99912 * 195.10706 * 9 7 2 11 11 C 1.53001 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42889 * 109.47362 * 64.99742 * 11 10 9 13 13 C 1.42906 * 114.00126 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47321 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00449 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99653 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47360 * 59.99872 * 18 16 14 20 20 H 1.48503 * 109.46969 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47164 * 299.99536 * 18 16 14 22 22 H 1.09006 * 109.46785 * 305.00141 * 1 2 3 23 23 H 1.09000 * 109.47511 * 65.00434 * 1 2 3 24 24 H 1.09001 * 109.47407 * 185.00936 * 1 2 3 25 25 H 1.09002 * 110.49181 * 335.78233 * 4 2 1 26 26 H 1.09000 * 110.48672 * 98.42948 * 4 2 1 27 27 H 1.09003 * 110.75318 * 279.62824 * 5 4 2 28 28 H 1.08993 * 110.75942 * 156.25985 * 5 4 2 29 29 H 1.08997 * 110.48666 * 203.38037 * 6 5 4 30 30 H 1.09000 * 110.59329 * 80.79588 * 6 5 4 31 31 H 1.00893 * 111.00433 * 319.05664 * 9 7 2 32 32 H 1.09003 * 109.46787 * 299.99948 * 10 9 7 33 33 H 1.08994 * 109.47306 * 59.99989 * 10 9 7 34 34 H 1.09003 * 109.46792 * 185.00339 * 11 10 9 35 35 H 1.09001 * 109.46561 * 304.99337 * 11 10 9 36 36 H 1.08992 * 109.47206 * 300.00182 * 13 12 11 37 37 H 1.09003 * 109.46907 * 59.99915 * 13 12 11 38 38 H 0.97002 * 119.99595 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7560 -1.2366 5 6 3.3136 -1.5012 -0.7187 6 6 2.8874 -1.9404 0.7042 7 6 2.0572 -0.7531 1.2339 8 1 2.6861 -0.0944 1.8328 9 7 0.9329 -1.2452 2.0414 10 6 1.3824 -1.6445 3.3817 11 6 0.1866 -2.1508 4.1909 12 8 -0.3230 -3.3439 3.5920 13 6 -1.4475 -3.9023 4.2745 14 6 -1.9000 -5.1496 3.5601 15 1 -1.3807 -5.4830 2.6738 16 6 -2.9772 -5.8654 4.0380 17 7 -3.6100 -5.4593 5.1170 18 14 -3.5377 -7.4120 3.1529 19 1 -2.4299 -8.4007 3.1341 20 1 -4.7064 -7.9922 3.8621 21 1 -3.9223 -7.0728 1.7592 22 1 -0.3633 0.5895 0.8419 23 1 -0.3634 0.4342 -0.9314 24 1 -0.3634 -1.0237 0.0897 25 1 1.3141 -1.4667 -1.5961 26 1 2.3296 -0.0544 -2.0255 27 1 4.1709 -0.8295 -0.6750 28 1 3.5324 -2.3685 -1.3414 29 1 3.7637 -2.1033 1.3317 30 1 2.2777 -2.8429 0.6603 31 1 0.1984 -0.5557 2.0969 32 1 2.1241 -2.4386 3.2946 33 1 1.8262 -0.7866 3.8867 34 1 0.5028 -2.3633 5.2122 35 1 -0.5926 -1.3888 4.2029 36 1 -1.1648 -4.1513 5.2973 37 1 -2.2608 -3.1768 4.2887 38 1 -4.3676 -5.9631 5.4535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378789315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = -83.339054 kcal Electronic energy + Delta-G solvation = -16019.282525 eV Core-core repulsion = 13474.099465 eV Total energy + Delta-G solvation = -2545.183059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04358 -38.52298 -35.55447 -34.69886 -32.23079 -30.60315 -28.91723 -26.96900 -25.69360 -24.46972 -23.01299 -21.44410 -19.87934 -18.62398 -17.52438 -17.19938 -16.79551 -16.43277 -16.10635 -15.64256 -15.00052 -14.80191 -14.52638 -14.01748 -13.69606 -13.53531 -13.04209 -12.89076 -12.80899 -12.58285 -12.38236 -12.17084 -11.89324 -11.79614 -11.61509 -11.51127 -11.46478 -11.33561 -11.25005 -10.84875 -10.18280 -9.18363 -8.31160 -6.43152 1.39598 1.44741 1.53121 2.35688 3.02357 3.20379 3.29801 3.66265 3.75104 4.05851 4.25095 4.27154 4.44782 4.51366 4.53680 4.58156 4.64354 4.69707 4.74021 4.80884 4.86169 4.98475 5.02251 5.10560 5.12176 5.20150 5.25044 5.29978 5.35451 5.50257 5.56044 5.61836 5.98351 6.24614 6.54007 6.60322 6.87386 7.29060 8.81078 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.005327 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.129216 B = 5254.925822 C = 5590.769033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.085 0.915 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.119 4.119 7 C 0.084 3.916 8 H 0.048 0.952 9 N -0.690 5.690 10 C 0.073 3.927 11 C 0.056 3.944 12 O -0.395 6.395 13 C 0.209 3.791 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.266 1.266 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.038 0.962 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.190 11.976 -9.529 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.025 4.025 8 H 0.066 0.934 9 N -0.325 5.325 10 C -0.056 4.056 11 C -0.022 4.022 12 O -0.315 6.315 13 C 0.134 3.866 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.191 1.191 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.147 11.233 -9.809 19.234 hybrid contribution -0.564 0.180 0.842 1.029 sum 11.583 11.413 -8.967 18.570 Atomic orbital electron populations 1.21744 0.95173 1.01813 1.01339 1.21855 0.95928 0.99156 0.94056 0.89626 1.22402 0.97080 0.98917 0.96954 1.22439 0.97895 1.00161 0.95075 1.22430 0.98395 0.97885 0.96998 1.22251 0.91191 0.94977 0.94115 0.93395 1.60652 1.11604 1.46470 1.13809 1.21890 0.95333 0.99319 0.89041 1.22586 0.96037 0.87593 0.95960 1.87914 1.48599 1.40733 1.54234 1.19791 0.83138 0.92509 0.91211 1.21349 1.14969 1.09526 1.12608 0.92312 1.25953 0.95593 1.01768 0.95832 1.70066 1.21842 1.41454 1.23691 0.85250 0.77962 0.77760 0.78525 1.19047 1.19784 1.19102 0.92792 0.91926 0.93248 0.92672 0.90138 0.90157 0.91411 0.91943 0.93121 0.83513 0.91356 0.91804 0.93588 0.94371 0.99916 0.99925 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 7.77 71.98 0.56 -2.65 16 2 C -0.09 -1.84 3.50 -10.07 -0.04 -1.88 16 3 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.12 -2.21 6.36 31.67 0.20 -2.01 16 5 C -0.12 -2.23 6.91 31.89 0.22 -2.01 16 6 C -0.12 -2.90 6.00 31.67 0.19 -2.71 16 7 C 0.08 1.99 3.21 45.64 0.15 2.14 16 8 H 0.05 1.02 7.97 -2.39 -0.02 1.00 16 9 N -0.69 -20.57 5.20 -487.83 -2.54 -23.11 16 10 C 0.07 2.23 5.90 86.30 0.51 2.74 16 11 C 0.06 2.14 6.22 71.98 0.45 2.59 16 12 O -0.40 -20.28 10.27 -148.98 -1.53 -21.81 16 13 C 0.21 12.21 5.69 71.23 0.41 12.62 16 14 C -0.55 -33.82 9.43 25.60 0.24 -33.57 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 18 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H 0.05 1.14 7.03 -2.38 -0.02 1.12 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.42 7.49 -2.39 -0.02 1.40 16 25 H 0.05 1.22 7.85 -2.39 -0.02 1.21 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.58 8.05 -2.39 -0.02 1.56 16 31 H 0.34 9.72 6.14 -89.70 -0.55 9.17 16 32 H 0.07 2.19 7.77 -2.39 -0.02 2.18 16 33 H 0.06 1.53 8.09 -2.39 -0.02 1.52 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -67.89 304.01 2.04 -65.85 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.45 Total: 12.31 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 3.35 Total: -23.88 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.25 Total: -80.02 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.53 Total: -21.81 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.89 2.04 -65.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378789315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.494 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds