Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.43312 * 2 1 4 4 C 1.54266 * 110.48561 * 122.53707 * 2 1 3 5 5 C 1.53872 * 106.60044 * 142.28833 * 4 2 1 6 6 C 1.54266 * 106.59640 * 359.97438 * 5 4 2 7 7 C 1.54887 * 104.19888 * 336.38805 * 6 5 4 8 8 H 1.09000 * 110.75698 * 279.63123 * 7 6 5 9 9 N 1.46894 * 110.75889 * 156.25489 * 7 6 5 10 10 C 1.46900 * 110.99918 * 86.45405 * 9 7 6 11 11 C 1.53001 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46812 * 65.00348 * 11 10 9 13 13 C 1.42906 * 113.99655 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46778 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99888 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47423 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47206 * 119.99985 * 18 16 14 21 21 H 1.48503 * 109.47036 * 239.99576 * 18 16 14 22 22 H 1.08993 * 109.47345 * 298.91389 * 1 2 3 23 23 H 1.09000 * 109.46957 * 58.91741 * 1 2 3 24 24 H 1.09001 * 109.46799 * 178.91381 * 1 2 3 25 25 H 1.09002 * 110.02957 * 23.00444 * 4 2 1 26 26 H 1.08996 * 110.03427 * 261.57665 * 4 2 1 27 27 H 1.09003 * 110.03622 * 240.71485 * 5 4 2 28 28 H 1.09003 * 110.07498 * 119.30332 * 5 4 2 29 29 H 1.09001 * 110.48620 * 95.07012 * 6 5 4 30 30 H 1.09004 * 110.48798 * 217.70845 * 6 5 4 31 31 H 1.00903 * 110.99879 * 322.50584 * 9 7 6 32 32 H 1.09003 * 109.47250 * 300.00257 * 10 9 7 33 33 H 1.08994 * 109.46932 * 60.00318 * 10 9 7 34 34 H 1.08995 * 109.47442 * 185.00220 * 11 10 9 35 35 H 1.09004 * 109.47490 * 305.00614 * 11 10 9 36 36 H 1.08996 * 109.47003 * 299.99600 * 13 12 11 37 37 H 1.08998 * 109.47442 * 60.00100 * 13 12 11 38 38 H 0.97000 * 119.99667 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7772 1.2183 5 6 3.3165 -1.5396 0.7361 6 6 3.4903 -1.1995 -0.7585 7 6 2.0716 -0.7845 -1.2212 8 1 1.4576 -1.6630 -1.4196 9 7 2.1427 0.0812 -2.4058 10 6 2.1942 -0.7164 -3.6383 11 6 2.2669 0.2179 -4.8477 12 8 3.4973 0.9439 -4.8156 13 6 3.6658 1.8507 -5.9071 14 6 4.9899 2.5577 -5.7729 15 1 5.6377 2.3369 -4.9374 16 6 5.3743 3.4863 -6.7168 17 7 4.5853 3.7554 -7.7339 18 14 7.0153 4.3632 -6.5501 19 1 7.7092 3.8867 -5.3268 20 1 7.8545 4.0735 -7.7404 21 1 6.7863 5.8271 -6.4503 22 1 -0.3634 0.4968 0.8995 23 1 -0.3633 0.5306 -0.8801 24 1 -0.3633 -1.0275 -0.0195 25 1 1.3175 -1.4802 1.5760 26 1 2.3411 -0.0832 2.0137 27 1 3.1692 -2.6125 0.8599 28 1 4.1932 -1.2161 1.2974 29 1 4.1893 -0.3724 -0.8828 30 1 3.8312 -2.0746 -1.3118 31 1 2.9306 0.7089 -2.3481 32 1 3.0760 -1.3569 -3.6200 33 1 1.2985 -1.3333 -3.7095 34 1 2.2156 -0.3696 -5.7644 35 1 1.4314 0.9174 -4.8173 36 1 3.6434 1.2973 -6.8459 37 1 2.8595 2.5840 -5.8982 38 1 4.8559 4.4085 -8.3982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378789316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -76.714451 kcal Electronic energy + Delta-G solvation = -15828.536253 eV Core-core repulsion = 13283.640458 eV Total energy + Delta-G solvation = -2544.895795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.89434 -36.83860 -34.23152 -32.61857 -31.23946 -29.26940 -27.05895 -26.00503 -24.33281 -22.34517 -21.38553 -20.52126 -19.67305 -16.43197 -16.05663 -15.70097 -15.26234 -14.94103 -14.37573 -14.02401 -13.83757 -13.37328 -13.21082 -12.94930 -12.33149 -12.15914 -11.88790 -11.58671 -11.24878 -11.16356 -10.99851 -10.79362 -10.74220 -10.72481 -10.59370 -10.45838 -10.30187 -9.95499 -9.08044 -8.81421 -8.15552 -8.06550 -6.10133 -4.11760 3.29429 3.35870 3.42076 4.30667 4.35969 4.58489 4.66624 4.91708 4.98315 5.24810 5.26471 5.35572 5.43801 5.49611 5.56857 5.60016 5.61767 5.77710 5.84610 5.87054 5.90923 6.05430 6.08976 6.14991 6.23165 6.25079 6.32243 6.39750 6.45133 7.13214 7.34267 7.45686 7.73039 7.80199 8.16627 8.59473 9.01852 9.53165 11.01483 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.004856 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.226305 B = 5764.209703 C = 6109.489238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.157 4.157 7 C 0.088 3.912 8 H 0.080 0.920 9 N -0.679 5.679 10 C 0.066 3.934 11 C 0.062 3.938 12 O -0.399 6.399 13 C 0.197 3.803 14 C -0.514 4.514 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.356 0.644 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.006 0.994 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -9.933 14.472 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.197 4.197 7 C -0.023 4.023 8 H 0.098 0.902 9 N -0.310 5.310 10 C -0.063 4.063 11 C -0.016 4.016 12 O -0.319 6.319 13 C 0.122 3.878 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.176 0.824 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.740 -9.734 14.397 18.640 hybrid contribution 1.551 0.178 -0.302 1.590 sum -5.189 -9.556 14.095 17.802 Atomic orbital electron populations 1.21715 0.94910 1.01169 1.01637 1.21920 0.95708 0.99597 0.93341 0.90393 1.22216 0.97128 0.98832 0.97778 1.22028 0.98002 0.99803 0.96044 1.23111 0.98857 1.01701 0.96021 1.22637 0.94521 0.94900 0.90243 0.90221 1.60487 1.50396 1.19620 1.00511 1.21949 0.99864 0.94946 0.89520 1.22305 0.89272 0.94413 0.95637 1.87788 1.35986 1.57397 1.50727 1.20176 0.96972 0.86849 0.83765 1.21094 1.02751 1.21706 1.09635 0.91600 1.24948 0.97919 0.96693 0.94949 1.69977 1.36958 1.34180 1.12642 0.86296 0.82955 0.79194 0.78133 1.19527 1.20866 1.20823 0.93347 0.91854 0.93334 0.91956 0.92028 0.92214 0.92093 0.91135 0.91963 0.82390 0.94849 0.90892 0.94277 0.93606 0.97856 0.97621 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.11 37.16 0.34 -1.08 16 2 C -0.09 -0.97 3.15 -88.94 -0.28 -1.25 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.12 -1.17 6.37 -25.61 -0.16 -1.33 16 5 C -0.12 -1.19 6.80 -25.61 -0.17 -1.37 16 6 C -0.16 -1.86 6.37 -25.07 -0.16 -2.02 16 7 C 0.09 1.08 2.60 -65.71 -0.17 0.91 16 8 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 9 N -0.68 -10.23 6.36 -104.61 -0.67 -10.89 16 10 C 0.07 1.02 5.97 -3.82 -0.02 1.00 16 11 C 0.06 1.17 6.28 37.16 0.23 1.40 16 12 O -0.40 -9.61 9.85 -35.23 -0.35 -9.96 16 13 C 0.20 5.46 5.69 36.01 0.20 5.66 16 14 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.92 7.81 -51.93 -0.41 0.51 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.36 6.01 7.86 -39.29 -0.31 5.70 16 32 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -30.17 308.96 -8.24 -38.42 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.99 Total: -0.69 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.62 Total: -12.09 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.07 Total: -37.26 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.35 Total: -9.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.17 -8.24 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378789316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.296 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds