Wall clock time and date at job start Sun Mar 29 2020 22:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.43312 * 2 1 4 4 C 1.54266 * 110.48561 * 122.53707 * 2 1 3 5 5 C 1.53872 * 106.60044 * 142.28833 * 4 2 1 6 6 C 1.54266 * 106.59640 * 359.97438 * 5 4 2 7 7 C 1.54887 * 104.19888 * 336.38805 * 6 5 4 8 8 H 1.09000 * 110.75698 * 279.63123 * 7 6 5 9 9 N 1.46894 * 110.75889 * 156.25489 * 7 6 5 10 10 C 1.46900 * 110.99918 * 86.45405 * 9 7 6 11 11 C 1.53001 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46812 * 65.00348 * 11 10 9 13 13 C 1.42906 * 113.99655 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46778 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99888 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47423 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47206 * 119.99985 * 18 16 14 21 21 H 1.48503 * 109.47036 * 239.99576 * 18 16 14 22 22 H 1.08993 * 109.47345 * 298.91389 * 1 2 3 23 23 H 1.09000 * 109.46957 * 58.91741 * 1 2 3 24 24 H 1.09001 * 109.46799 * 178.91381 * 1 2 3 25 25 H 1.09002 * 110.02957 * 23.00444 * 4 2 1 26 26 H 1.08996 * 110.03427 * 261.57665 * 4 2 1 27 27 H 1.09003 * 110.03622 * 240.71485 * 5 4 2 28 28 H 1.09003 * 110.07498 * 119.30332 * 5 4 2 29 29 H 1.09001 * 110.48620 * 95.07012 * 6 5 4 30 30 H 1.09004 * 110.48798 * 217.70845 * 6 5 4 31 31 H 1.00903 * 110.99879 * 322.50584 * 9 7 6 32 32 H 1.09003 * 109.47250 * 300.00257 * 10 9 7 33 33 H 1.08994 * 109.46932 * 60.00318 * 10 9 7 34 34 H 1.08995 * 109.47442 * 185.00220 * 11 10 9 35 35 H 1.09004 * 109.47490 * 305.00614 * 11 10 9 36 36 H 1.08996 * 109.47003 * 299.99600 * 13 12 11 37 37 H 1.08998 * 109.47442 * 60.00100 * 13 12 11 38 38 H 0.97000 * 119.99667 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7772 1.2183 5 6 3.3165 -1.5396 0.7361 6 6 3.4903 -1.1995 -0.7585 7 6 2.0716 -0.7845 -1.2212 8 1 1.4576 -1.6630 -1.4196 9 7 2.1427 0.0812 -2.4058 10 6 2.1942 -0.7164 -3.6383 11 6 2.2669 0.2179 -4.8477 12 8 3.4973 0.9439 -4.8156 13 6 3.6658 1.8507 -5.9071 14 6 4.9899 2.5577 -5.7729 15 1 5.6377 2.3369 -4.9374 16 6 5.3743 3.4863 -6.7168 17 7 4.5853 3.7554 -7.7339 18 14 7.0153 4.3632 -6.5501 19 1 7.7092 3.8867 -5.3268 20 1 7.8545 4.0735 -7.7404 21 1 6.7863 5.8271 -6.4503 22 1 -0.3634 0.4968 0.8995 23 1 -0.3633 0.5306 -0.8801 24 1 -0.3633 -1.0275 -0.0195 25 1 1.3175 -1.4802 1.5760 26 1 2.3411 -0.0832 2.0137 27 1 3.1692 -2.6125 0.8599 28 1 4.1932 -1.2161 1.2974 29 1 4.1893 -0.3724 -0.8828 30 1 3.8312 -2.0746 -1.3118 31 1 2.9306 0.7089 -2.3481 32 1 3.0760 -1.3569 -3.6200 33 1 1.2985 -1.3333 -3.7095 34 1 2.2156 -0.3696 -5.7644 35 1 1.4314 0.9174 -4.8173 36 1 3.6434 1.2973 -6.8459 37 1 2.8595 2.5840 -5.8982 38 1 4.8559 4.4085 -8.3982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378789316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:58 Heat of formation + Delta-G solvation = -96.125300 kcal Electronic energy + Delta-G solvation = -15829.377971 eV Core-core repulsion = 13283.640458 eV Total energy + Delta-G solvation = -2545.737512 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.89029 -38.60112 -35.61354 -34.72079 -32.09298 -30.72982 -28.97235 -27.14946 -25.31117 -24.52204 -22.78186 -21.45800 -20.56224 -18.64341 -17.50679 -17.18602 -16.57339 -16.40145 -16.13063 -15.36061 -15.08098 -14.75440 -14.25793 -14.16704 -13.76338 -13.49064 -13.25921 -12.93711 -12.76506 -12.74879 -12.48680 -12.34997 -12.08139 -11.96127 -11.74580 -11.49515 -11.35413 -11.26877 -11.19961 -10.88391 -10.24012 -9.23346 -8.33079 -6.45577 1.39445 1.40968 1.55508 2.34008 3.00892 3.17380 3.23744 3.71086 3.78601 3.99201 4.20937 4.35805 4.41040 4.47408 4.55731 4.58489 4.62101 4.73293 4.74661 4.82156 4.84838 4.94846 5.00282 5.04503 5.12760 5.17356 5.25375 5.28941 5.36671 5.45412 5.53960 5.58549 5.94847 6.21455 6.42821 6.52481 6.80862 7.26537 8.79618 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.004856 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.226305 B = 5764.209703 C = 6109.489238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.060 0.940 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.158 4.158 7 C 0.087 3.913 8 H 0.090 0.910 9 N -0.688 5.688 10 C 0.077 3.923 11 C 0.054 3.946 12 O -0.408 6.408 13 C 0.211 3.789 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.342 0.658 32 H 0.032 0.968 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.042 0.958 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -10.550 15.743 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.197 4.197 7 C -0.023 4.023 8 H 0.108 0.892 9 N -0.318 5.318 10 C -0.052 4.052 11 C -0.023 4.023 12 O -0.328 6.328 13 C 0.136 3.864 14 C -0.585 4.585 15 H 0.080 0.920 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.197 1.197 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.401 -10.376 15.681 19.863 hybrid contribution 1.353 0.329 -0.703 1.560 sum -5.048 -10.047 14.979 18.729 Atomic orbital electron populations 1.21678 0.94135 1.01818 1.01401 1.21915 0.96346 0.98752 0.93645 0.92174 1.22191 0.97226 0.98977 0.97005 1.22021 0.98377 1.00733 0.94354 1.23072 0.98035 1.00908 0.97702 1.22743 0.95131 0.94948 0.89501 0.89155 1.60537 1.49639 1.20152 1.01448 1.21905 1.01166 0.94013 0.88161 1.22618 0.87060 0.94558 0.98089 1.87756 1.38634 1.57156 1.49270 1.19798 0.95887 0.86687 0.84056 1.21411 1.03664 1.23141 1.10268 0.92025 1.25967 1.02137 0.97007 0.94101 1.70081 1.39032 1.34618 1.13295 0.85126 0.77612 0.77992 0.78603 1.18835 1.19614 1.19652 0.92229 0.93546 0.92127 0.90430 0.91423 0.90820 0.91743 0.93012 0.92055 0.83992 0.95015 0.87940 0.93430 0.93971 0.99728 0.99795 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.11 71.98 0.66 -1.88 16 2 C -0.09 -1.85 3.15 -9.71 -0.03 -1.88 16 3 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.12 -1.96 6.37 31.32 0.20 -1.76 16 5 C -0.12 -2.07 6.80 31.32 0.21 -1.86 16 6 C -0.16 -3.59 6.37 31.67 0.20 -3.39 16 7 C 0.09 2.03 2.60 46.22 0.12 2.16 16 8 H 0.09 1.94 7.82 -2.39 -0.02 1.93 16 9 N -0.69 -20.58 6.36 -484.89 -3.08 -23.66 16 10 C 0.08 2.30 5.97 86.30 0.51 2.82 16 11 C 0.05 2.06 6.28 71.98 0.45 2.52 16 12 O -0.41 -20.18 9.85 -148.98 -1.47 -21.65 16 13 C 0.21 12.11 5.69 71.24 0.41 12.51 16 14 C -0.55 -33.05 9.43 25.60 0.24 -32.81 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.01 0.37 5.46 84.65 0.46 0.83 16 17 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 18 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 1.10 7.84 -2.39 -0.02 1.08 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.34 11.83 7.86 -89.69 -0.71 11.13 16 32 H 0.03 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.10 2.50 8.09 -2.39 -0.02 2.48 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.75 308.96 1.49 -63.26 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.29 Total: 14.34 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 3.44 Total: -22.74 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.80 Total: -80.00 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.47 Total: -21.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.75 1.49 -63.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378789316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.870 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds