Wall clock time and date at job start Sun Mar 29 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 C 1.53000 * 109.47021 * 119.99590 * 2 1 3 5 5 H 1.08997 * 109.47413 * 307.19896 * 4 2 1 6 6 N 1.46500 * 109.47409 * 187.19400 * 4 2 1 7 7 C 1.36937 * 120.00124 * 91.73215 * 6 4 2 8 8 H 1.08001 * 119.99474 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00440 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99752 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00242 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46998 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47172 * 119.99928 * 11 9 7 14 14 H 1.48492 * 109.46995 * 239.99939 * 11 9 7 15 15 C 1.53002 * 109.46894 * 67.19650 * 4 2 1 16 16 C 1.53008 * 112.90836 * 58.10328 * 15 4 2 17 17 O 1.42894 * 109.47029 * 174.19633 * 16 15 4 18 18 C 1.53779 * 113.61509 * 286.85353 * 15 4 2 19 19 C 1.53783 * 87.07830 * 270.88171 * 18 15 4 20 20 C 1.53781 * 87.08251 * 334.56520 * 19 18 15 21 21 H 1.09001 * 109.47498 * 280.75833 * 1 2 3 22 22 H 1.09003 * 109.46888 * 40.76152 * 1 2 3 23 23 H 1.08997 * 109.46948 * 160.75853 * 1 2 3 24 24 H 1.08998 * 109.47179 * 239.99906 * 2 1 3 25 25 H 1.09000 * 109.47108 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47191 * 299.99719 * 3 2 1 27 27 H 1.08998 * 109.47153 * 59.99890 * 3 2 1 28 28 H 0.97001 * 120.00349 * 271.73736 * 6 4 2 29 29 H 0.96996 * 120.00205 * 180.02562 * 10 9 7 30 30 H 1.08996 * 109.46727 * 294.19570 * 16 15 4 31 31 H 1.08998 * 109.46800 * 54.19512 * 16 15 4 32 32 H 0.96703 * 113.99887 * 180.02562 * 17 16 15 33 33 H 1.09000 * 113.61371 * 25.42936 * 18 15 4 34 34 H 1.09000 * 113.61793 * 156.33592 * 18 15 4 35 35 H 1.09009 * 113.61387 * 89.11822 * 19 18 15 36 36 H 1.09001 * 113.61373 * 220.01424 * 19 18 15 37 37 H 1.08991 * 113.61595 * 270.88562 * 20 19 18 38 38 H 1.08997 * 113.61200 * 139.98012 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5753 -0.2871 2.1346 6 7 3.4947 -0.5732 1.3390 7 6 4.0347 0.4705 2.0420 8 1 3.3881 1.1843 2.5306 9 6 5.4131 0.6110 2.1266 10 7 6.2011 -0.2587 1.5306 11 14 6.1498 2.0344 3.0861 12 1 5.0584 2.8642 3.6566 13 1 6.9961 1.5049 4.1855 14 1 6.9804 2.8659 2.1786 15 6 1.6828 -2.2064 1.1623 16 6 2.2590 -2.8856 -0.0818 17 8 1.9984 -4.2893 -0.0219 18 6 0.1889 -2.4948 1.3854 19 6 0.5149 -2.6064 2.8841 20 6 1.9462 -2.9807 2.4645 21 1 -0.3634 0.1918 1.0096 22 1 -0.3633 0.7784 -0.6710 23 1 -0.3633 -0.9702 -0.3387 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 4.0754 -1.2145 0.9004 29 1 7.1642 -0.1607 1.5900 30 1 1.7921 -2.4671 -0.9733 31 1 3.3351 -2.7172 -0.1221 32 1 2.3369 -4.7849 -0.7802 33 1 -0.4595 -1.6534 1.1410 34 1 -0.1462 -3.4318 0.9405 35 1 0.4500 -1.6576 3.4169 36 1 -0.0176 -3.4131 3.3879 37 1 2.0916 -4.0504 2.3147 38 1 2.7165 -2.5315 3.0914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378855470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:05 Heat of formation + Delta-G solvation = -24.872070 kcal Electronic energy + Delta-G solvation = -17297.344619 eV Core-core repulsion = 14754.696878 eV Total energy + Delta-G solvation = -2542.647741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79689 -35.93963 -35.12889 -33.07191 -30.46705 -28.20136 -26.63392 -25.19841 -24.60456 -22.78786 -21.87915 -19.46288 -17.95847 -16.98721 -16.71467 -15.19878 -14.74395 -14.53343 -14.35708 -13.81310 -13.37281 -13.04651 -12.84934 -12.07294 -11.96390 -11.77195 -11.43415 -11.34421 -11.19225 -10.90289 -10.86454 -10.71826 -10.32391 -10.15779 -10.07181 -9.74598 -9.65329 -9.42845 -9.34789 -9.13293 -8.75184 -6.90616 -5.74228 -3.01318 3.43795 3.50212 3.51837 4.59721 4.63153 5.06076 5.19400 5.27889 5.40037 5.52559 5.64152 5.71663 5.75733 5.86160 6.00917 6.08242 6.11174 6.17680 6.24682 6.33722 6.35318 6.38427 6.50633 6.56912 6.63735 6.68189 6.77305 6.89559 6.98827 7.08529 7.19060 7.37820 7.74068 7.97332 8.44457 9.55854 10.13946 10.48974 11.48544 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.009401 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.895391 B = 2977.558923 C = 3310.623747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.135 4.135 4 C 0.208 3.792 5 H 0.056 0.944 6 N -0.718 5.718 7 C -0.227 4.227 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.901 3.099 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.293 1.293 15 C -0.079 4.079 16 C 0.090 3.910 17 O -0.574 6.574 18 C -0.144 4.144 19 C -0.142 4.142 20 C -0.120 4.120 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.041 0.959 28 H 0.383 0.617 29 H 0.253 0.747 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.370 0.630 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -3.918 -3.197 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.192 4.192 4 C 0.097 3.903 5 H 0.074 0.926 6 N -0.358 5.358 7 C -0.358 4.358 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.733 3.267 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.220 1.220 15 C -0.080 4.080 16 C 0.013 3.987 17 O -0.378 6.378 18 C -0.182 4.182 19 C -0.180 4.180 20 C -0.158 4.158 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.217 0.783 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.216 0.784 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.964 -3.575 -2.498 11.800 hybrid contribution 1.030 0.455 -0.232 1.150 sum -9.935 -3.120 -2.731 10.765 Atomic orbital electron populations 1.22139 0.97124 1.00508 1.00827 1.21827 0.93605 0.97674 1.00481 1.21751 1.03887 0.94786 0.98766 1.20036 0.86450 0.88838 0.94953 0.92597 1.42420 0.99407 1.31732 1.62265 1.19249 0.89910 1.02824 1.23856 0.91182 1.24689 0.96154 0.98880 1.01319 1.69661 1.03000 1.37142 1.48392 0.86200 0.79108 0.82043 0.79392 1.20618 1.22029 1.22042 1.22151 0.95459 0.96414 0.94008 1.22007 0.99289 0.80066 0.97359 1.86426 1.82685 1.20199 1.48512 1.23349 0.96529 1.01968 0.96314 1.22779 0.97978 1.00800 0.96427 1.22777 0.96492 0.99947 0.96555 0.92968 0.93953 0.92625 0.92410 0.89875 0.95343 0.93987 0.78303 0.93693 0.94078 0.92921 0.78402 0.90219 0.90447 0.90697 0.92643 0.90270 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.58 37.16 0.28 -1.87 16 2 C -0.11 -2.01 2.51 -90.62 -0.23 -2.24 16 3 C -0.13 -2.53 8.28 37.16 0.31 -2.22 16 4 C 0.21 4.03 1.50 -67.93 -0.10 3.93 16 5 H 0.06 1.15 7.02 -51.93 -0.36 0.79 16 6 N -0.72 -17.11 4.53 -53.43 -0.24 -17.35 16 7 C -0.23 -6.02 7.82 -15.06 -0.12 -6.14 16 8 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 11 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 C -0.08 -1.37 0.56 -153.69 -0.09 -1.45 16 16 C 0.09 1.49 5.96 37.16 0.22 1.71 16 17 O -0.57 -8.58 11.73 -35.23 -0.41 -9.00 16 18 C -0.14 -2.18 6.23 -25.92 -0.16 -2.34 16 19 C -0.14 -2.22 7.73 -25.92 -0.20 -2.42 16 20 C -0.12 -2.16 7.04 -25.92 -0.18 -2.35 16 21 H 0.05 0.74 7.22 -51.93 -0.37 0.37 16 22 H 0.04 0.57 7.99 -51.93 -0.41 0.15 16 23 H 0.05 0.75 6.24 -51.93 -0.32 0.43 16 24 H 0.06 1.03 6.45 -51.93 -0.33 0.70 16 25 H 0.08 1.85 6.38 -51.93 -0.33 1.51 16 26 H 0.03 0.47 8.13 -51.93 -0.42 0.04 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.38 9.84 6.37 -40.82 -0.26 9.58 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.04 0.63 6.89 -51.93 -0.36 0.28 16 31 H 0.05 0.98 6.71 -51.93 -0.35 0.63 16 32 H 0.37 3.86 9.12 45.56 0.42 4.28 16 33 H 0.08 1.13 4.09 -51.93 -0.21 0.91 16 34 H 0.08 1.17 7.57 -51.93 -0.39 0.77 16 35 H 0.07 1.17 7.60 -51.92 -0.39 0.78 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.42 7.15 -51.93 -0.37 1.05 16 38 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -29.05 286.30 -6.30 -35.35 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.30 Total: 12.30 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.36 Total: -15.90 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.48 Total: -44.26 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.41 Total: -9.00 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.05 -6.30 -35.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.475 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds