Wall clock time and date at job start Sun Mar 29 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 C 1.53000 * 109.47021 * 119.99590 * 2 1 3 5 5 H 1.08997 * 109.47413 * 307.19896 * 4 2 1 6 6 N 1.46500 * 109.47409 * 187.19400 * 4 2 1 7 7 C 1.36937 * 120.00124 * 91.73215 * 6 4 2 8 8 H 1.08001 * 119.99474 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00440 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99752 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00242 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46998 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47172 * 119.99928 * 11 9 7 14 14 H 1.48492 * 109.46995 * 239.99939 * 11 9 7 15 15 C 1.53002 * 109.46894 * 67.19650 * 4 2 1 16 16 C 1.53008 * 112.90836 * 58.10328 * 15 4 2 17 17 O 1.42894 * 109.47029 * 174.19633 * 16 15 4 18 18 C 1.53779 * 113.61509 * 286.85353 * 15 4 2 19 19 C 1.53783 * 87.07830 * 270.88171 * 18 15 4 20 20 C 1.53781 * 87.08251 * 334.56520 * 19 18 15 21 21 H 1.09001 * 109.47498 * 280.75833 * 1 2 3 22 22 H 1.09003 * 109.46888 * 40.76152 * 1 2 3 23 23 H 1.08997 * 109.46948 * 160.75853 * 1 2 3 24 24 H 1.08998 * 109.47179 * 239.99906 * 2 1 3 25 25 H 1.09000 * 109.47108 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47191 * 299.99719 * 3 2 1 27 27 H 1.08998 * 109.47153 * 59.99890 * 3 2 1 28 28 H 0.97001 * 120.00349 * 271.73736 * 6 4 2 29 29 H 0.96996 * 120.00205 * 180.02562 * 10 9 7 30 30 H 1.08996 * 109.46727 * 294.19570 * 16 15 4 31 31 H 1.08998 * 109.46800 * 54.19512 * 16 15 4 32 32 H 0.96703 * 113.99887 * 180.02562 * 17 16 15 33 33 H 1.09000 * 113.61371 * 25.42936 * 18 15 4 34 34 H 1.09000 * 113.61793 * 156.33592 * 18 15 4 35 35 H 1.09009 * 113.61387 * 89.11822 * 19 18 15 36 36 H 1.09001 * 113.61373 * 220.01424 * 19 18 15 37 37 H 1.08991 * 113.61595 * 270.88562 * 20 19 18 38 38 H 1.08997 * 113.61200 * 139.98012 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5753 -0.2871 2.1346 6 7 3.4947 -0.5732 1.3390 7 6 4.0347 0.4705 2.0420 8 1 3.3881 1.1843 2.5306 9 6 5.4131 0.6110 2.1266 10 7 6.2011 -0.2587 1.5306 11 14 6.1498 2.0344 3.0861 12 1 5.0584 2.8642 3.6566 13 1 6.9961 1.5049 4.1855 14 1 6.9804 2.8659 2.1786 15 6 1.6828 -2.2064 1.1623 16 6 2.2590 -2.8856 -0.0818 17 8 1.9984 -4.2893 -0.0219 18 6 0.1889 -2.4948 1.3854 19 6 0.5149 -2.6064 2.8841 20 6 1.9462 -2.9807 2.4645 21 1 -0.3634 0.1918 1.0096 22 1 -0.3633 0.7784 -0.6710 23 1 -0.3633 -0.9702 -0.3387 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 4.0754 -1.2145 0.9004 29 1 7.1642 -0.1607 1.5900 30 1 1.7921 -2.4671 -0.9733 31 1 3.3351 -2.7172 -0.1221 32 1 2.3369 -4.7849 -0.7802 33 1 -0.4595 -1.6534 1.1410 34 1 -0.1462 -3.4318 0.9405 35 1 0.4500 -1.6576 3.4169 36 1 -0.0176 -3.4131 3.3879 37 1 2.0916 -4.0504 2.3147 38 1 2.7165 -2.5315 3.0914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378855470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:05 Heat of formation + Delta-G solvation = -44.566483 kcal Electronic energy + Delta-G solvation = -17298.198633 eV Core-core repulsion = 14754.696878 eV Total energy + Delta-G solvation = -2543.501754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19550 -37.31810 -36.54688 -34.88285 -32.31770 -29.67915 -28.01630 -26.89115 -25.94738 -24.59701 -23.25541 -20.88888 -19.63353 -18.59110 -18.14198 -16.83836 -16.21066 -16.01485 -15.73869 -15.52319 -14.91067 -14.80064 -14.31901 -13.50292 -13.31993 -13.17161 -12.95550 -12.86142 -12.71761 -12.61187 -12.53152 -12.13491 -12.06470 -12.00017 -11.57219 -11.36353 -11.13980 -11.02069 -10.77181 -10.61938 -10.38009 -8.89342 -7.88030 -5.12932 1.46187 1.47248 1.55870 2.58806 3.38035 3.49563 3.67702 3.78620 3.99009 4.07796 4.16147 4.30990 4.39938 4.46744 4.64973 4.72736 4.82112 4.85201 4.88456 4.99498 5.04805 5.08080 5.10251 5.16945 5.26942 5.29718 5.30167 5.49959 5.57785 5.59531 5.71909 5.73594 5.82022 6.34369 6.96276 7.40975 8.18012 8.41193 9.36050 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.009401 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.895391 B = 2977.558923 C = 3310.623747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.130 4.130 4 C 0.206 3.794 5 H 0.045 0.955 6 N -0.726 5.726 7 C -0.210 4.210 8 H 0.072 0.928 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.299 1.299 14 H -0.298 1.298 15 C -0.084 4.084 16 C 0.098 3.902 17 O -0.579 6.579 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.128 4.128 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.371 0.629 29 H 0.246 0.754 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.391 0.609 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 -3.866 -3.629 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.188 4.188 4 C 0.098 3.902 5 H 0.063 0.937 6 N -0.365 5.365 7 C -0.342 4.342 8 H 0.090 0.910 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.227 1.227 14 H -0.225 1.225 15 C -0.085 4.085 16 C 0.021 3.979 17 O -0.386 6.386 18 C -0.164 4.164 19 C -0.172 4.172 20 C -0.165 4.165 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.203 0.797 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.240 0.760 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.606 -3.523 -2.937 14.358 hybrid contribution 1.777 0.387 -0.115 1.823 sum -11.829 -3.136 -3.053 12.612 Atomic orbital electron populations 1.22062 0.93958 1.02144 1.01728 1.21708 0.96160 0.96278 0.98934 1.21673 1.01177 0.96110 0.99823 1.20193 0.83745 0.90764 0.95513 0.93657 1.42566 1.01407 1.30742 1.61805 1.19511 0.89923 1.02625 1.22132 0.90992 1.25357 0.96850 1.01419 1.03339 1.69806 1.02634 1.39159 1.50730 0.85270 0.78360 0.79609 0.77832 1.19173 1.22728 1.22518 1.22084 0.97625 0.94764 0.94028 1.21803 0.97505 0.81126 0.97506 1.86368 1.82718 1.19383 1.50148 1.23271 0.94565 1.03000 0.95525 1.22753 0.95945 1.01292 0.97216 1.22763 0.97211 0.99667 0.96883 0.92488 0.92312 0.90996 0.92616 0.93946 0.92962 0.94227 0.79661 0.94477 0.92476 0.95904 0.75988 0.88532 0.89498 0.90932 0.90714 0.90377 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 7.58 71.98 0.55 -3.01 16 2 C -0.11 -3.64 2.51 -10.79 -0.03 -3.67 16 3 C -0.13 -4.74 8.28 71.98 0.60 -4.15 16 4 C 0.21 7.88 1.50 44.99 0.07 7.94 16 5 H 0.05 1.83 7.02 -2.39 -0.02 1.81 16 6 N -0.73 -35.34 4.53 -322.94 -1.46 -36.80 16 7 C -0.21 -11.30 7.82 84.03 0.66 -10.65 16 8 H 0.07 3.79 7.82 -2.91 -0.02 3.76 16 9 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 10 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 11 Si 0.96 46.59 29.55 68.60 2.03 48.62 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 14 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 15 C -0.08 -2.79 0.56 -51.65 -0.03 -2.82 16 16 C 0.10 3.13 5.96 71.98 0.43 3.56 16 17 O -0.58 -16.17 11.73 -148.98 -1.75 -17.91 16 18 C -0.13 -3.41 6.23 31.12 0.19 -3.21 16 19 C -0.13 -3.89 7.73 31.12 0.24 -3.65 16 20 C -0.13 -4.54 7.04 31.12 0.22 -4.33 16 21 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 22 H 0.06 1.32 7.99 -2.39 -0.02 1.30 16 23 H 0.07 1.60 6.24 -2.39 -0.01 1.58 16 24 H 0.06 1.88 6.45 -2.39 -0.02 1.87 16 25 H 0.04 1.88 6.38 -2.39 -0.02 1.86 16 26 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.37 19.77 6.37 -92.71 -0.59 19.18 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.06 1.63 6.89 -2.39 -0.02 1.61 16 31 H 0.02 0.86 6.71 -2.39 -0.02 0.84 16 32 H 0.39 7.31 9.12 -74.06 -0.68 6.64 16 33 H 0.10 2.30 4.09 -2.39 -0.01 2.29 16 34 H 0.09 2.25 7.57 -2.39 -0.02 2.23 16 35 H 0.07 2.13 7.60 -2.38 -0.02 2.11 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.77 7.15 -2.39 -0.02 2.75 16 38 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 Total: -1.00 -63.30 286.30 2.25 -61.05 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.21 Total: 32.18 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 3.36 Total: -27.96 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -1.18 Total: -95.98 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.75 Total: -17.91 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -63.30 2.25 -61.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.484 kcal (2) G-P(sol) polarization free energy of solvation -63.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds