Wall clock time and date at job start Sun Mar 29 2020 21:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47078 * 2 1 4 4 H 1.09000 * 109.47333 * 54.62556 * 3 2 1 5 5 N 1.46901 * 109.47051 * 174.62541 * 3 2 1 6 6 C 1.46902 * 111.00202 * 273.30923 * 5 3 2 7 7 C 1.53000 * 109.47181 * 176.34319 * 6 5 3 8 8 C 1.50700 * 109.46779 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00159 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99561 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99887 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00213 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47326 * 270.00007 * 12 10 8 14 14 H 1.48494 * 109.47393 * 30.00235 * 12 10 8 15 15 H 1.48496 * 109.47425 * 150.00310 * 12 10 8 16 16 C 1.53001 * 109.47405 * 294.62218 * 3 2 1 17 17 H 1.09009 * 109.86757 * 63.99513 * 16 3 2 18 18 C 1.54102 * 109.88180 * 185.00196 * 16 3 2 19 19 C 1.54805 * 104.18762 * 121.45629 * 18 16 3 20 20 C 1.55000 * 102.09335 * 20.87946 * 19 18 16 21 21 O 1.43746 * 109.87826 * 302.83729 * 16 3 2 22 22 H 1.09001 * 109.46684 * 297.63000 * 1 2 3 23 23 H 1.08999 * 109.46940 * 57.62773 * 1 2 3 24 24 H 1.08995 * 109.47224 * 177.62624 * 1 2 3 25 25 H 1.09005 * 109.46767 * 239.99916 * 2 1 3 26 26 H 1.08991 * 109.47007 * 120.00277 * 2 1 3 27 27 H 1.00901 * 110.99972 * 37.26668 * 5 3 2 28 28 H 1.08999 * 109.46589 * 56.34902 * 6 5 3 29 29 H 1.08997 * 109.47030 * 296.34617 * 6 5 3 30 30 H 1.09005 * 109.46833 * 60.00310 * 7 6 5 31 31 H 1.08997 * 109.47381 * 300.00083 * 7 6 5 32 32 H 0.96995 * 120.00127 * 180.02562 * 11 10 8 33 33 H 1.09000 * 110.48536 * 240.13400 * 18 16 3 34 34 H 1.08995 * 110.48270 * 2.64435 * 18 16 3 35 35 H 1.08998 * 110.90954 * 139.07761 * 19 18 16 36 36 H 1.08994 * 110.91137 * 262.68487 * 19 18 16 37 37 H 1.09006 * 110.61335 * 81.48075 * 20 19 18 38 38 H 1.08994 * 110.61802 * 204.31287 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9834 0.8379 5 7 3.5033 1.4445 0.1297 6 6 3.9067 1.4088 1.5418 7 6 5.4313 1.3200 1.6346 8 6 5.8450 1.2828 3.0832 9 1 5.0956 1.3185 3.8599 10 6 7.1805 1.2032 3.4168 11 7 7.5416 1.1703 4.6811 12 14 8.4768 1.1408 2.0733 13 1 8.7401 -0.2735 1.7048 14 1 7.9902 1.8806 0.8812 15 1 9.7306 1.7656 2.5658 16 6 1.6434 2.1237 -1.3113 17 1 0.5576 2.1891 -1.3812 18 6 2.2586 3.5351 -1.3756 19 6 3.1246 3.5135 -2.6586 20 6 2.5001 2.3375 -3.4521 21 8 2.1639 1.3795 -2.4256 22 1 -0.3633 0.4766 0.9105 23 1 -0.3633 0.5502 -0.8680 24 1 -0.3633 -1.0267 -0.0426 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.9128 0.6779 -0.3828 28 1 3.4621 0.5387 2.0248 29 1 3.5646 2.3157 2.0404 30 1 5.8760 2.1902 1.1515 31 1 5.7735 0.4132 1.1360 32 1 8.4810 1.1146 4.9158 33 1 1.4757 4.2892 -1.4564 34 1 2.8777 3.7217 -0.4981 35 1 3.0275 4.4492 -3.2092 36 1 4.1685 3.3107 -2.4200 37 1 1.6045 2.6640 -3.9808 38 1 3.2246 1.9178 -4.1499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379649508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:29 Heat of formation + Delta-G solvation = -65.843351 kcal Electronic energy + Delta-G solvation = -16396.452971 eV Core-core repulsion = 13852.028582 eV Total energy + Delta-G solvation = -2544.424389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60253 -36.55471 -33.68115 -32.19306 -31.84178 -29.88249 -28.60120 -25.19353 -23.28450 -22.75956 -21.21393 -20.49705 -19.86741 -16.79400 -16.28698 -15.92860 -15.36488 -14.74621 -14.24386 -14.13033 -13.75002 -13.40950 -13.24810 -12.93508 -12.48849 -12.02138 -11.80216 -11.58455 -11.43752 -11.38163 -11.12049 -10.97079 -10.78076 -10.60248 -10.34102 -10.04154 -9.91100 -9.78068 -9.34172 -9.20345 -8.51748 -7.79006 -6.02639 -4.00710 3.33639 3.40882 3.46977 3.99631 4.48062 4.58055 4.82191 4.92189 5.04527 5.09852 5.17522 5.32038 5.33210 5.35493 5.51907 5.60325 5.75220 5.76537 5.87548 5.95931 5.96037 6.08504 6.18135 6.20433 6.29248 6.37817 6.42930 6.50921 6.81491 7.03579 7.20658 7.42697 7.68226 7.81272 7.99695 8.55531 9.01760 9.60041 11.10778 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029108 B = 0.006557 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.719543 B = 4269.538926 C = 4841.688077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 C 0.088 3.912 4 H 0.082 0.918 5 N -0.682 5.682 6 C 0.073 3.927 7 C -0.010 4.010 8 C -0.520 4.520 9 H 0.070 0.930 10 C 0.066 3.934 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.263 1.263 15 H -0.289 1.289 16 C 0.089 3.911 17 H 0.062 0.938 18 C -0.143 4.143 19 C -0.148 4.148 20 C 0.048 3.952 21 O -0.369 6.369 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.340 0.660 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 2.341 -14.769 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C -0.023 4.023 4 H 0.100 0.900 5 N -0.312 5.312 6 C -0.055 4.055 7 C -0.048 4.048 8 C -0.558 4.558 9 H 0.088 0.912 10 C -0.135 4.135 11 N -0.544 5.544 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.188 1.188 15 H -0.215 1.215 16 C 0.031 3.969 17 H 0.080 0.920 18 C -0.180 4.180 19 C -0.186 4.186 20 C -0.029 4.029 21 O -0.288 6.288 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.158 0.842 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.445 2.801 -14.693 19.457 hybrid contribution 0.529 -0.774 -0.290 0.981 sum -11.915 2.027 -14.983 19.250 Atomic orbital electron populations 1.21741 0.96009 1.01329 1.01409 1.22179 0.96210 0.98256 1.02439 1.21734 0.90060 0.94767 0.95701 0.89960 1.60629 1.06089 1.51087 1.13408 1.21987 0.98264 0.99334 0.85949 1.19547 0.91129 0.96534 0.97567 1.21081 0.93176 1.50649 0.90942 0.91151 1.25011 0.98620 0.94533 0.95289 1.69918 1.16866 1.51125 1.16476 0.86748 0.81010 0.78540 0.82834 1.20427 1.18784 1.21472 1.22807 0.96136 0.90958 0.87024 0.92008 1.22842 0.99237 0.95937 1.00034 1.23035 1.01277 0.98264 0.96007 1.23460 0.98332 0.89700 0.91415 1.88846 1.83825 1.30674 1.25406 0.93016 0.92698 0.93128 0.91102 0.91968 0.84151 0.96049 0.91952 0.95765 0.97365 0.92764 0.92178 0.88702 0.91277 0.89978 0.93109 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.73 37.16 0.36 -1.29 16 2 C -0.15 -2.04 5.29 -26.73 -0.14 -2.18 16 3 C 0.09 1.25 1.85 -67.71 -0.13 1.13 16 4 H 0.08 1.17 7.82 -51.93 -0.41 0.76 16 5 N -0.68 -11.54 5.25 -106.73 -0.56 -12.10 16 6 C 0.07 1.47 5.41 -3.82 -0.02 1.45 16 7 C -0.01 -0.24 4.26 -27.88 -0.12 -0.36 16 8 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 9 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 12 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 C 0.09 1.14 2.94 -26.16 -0.08 1.06 16 17 H 0.06 0.72 6.75 -51.92 -0.35 0.37 16 18 C -0.14 -1.75 6.35 -25.20 -0.16 -1.91 16 19 C -0.15 -1.68 7.15 -24.72 -0.18 -1.86 16 20 C 0.05 0.53 7.72 38.21 0.29 0.82 16 21 O -0.37 -5.06 10.25 -35.23 -0.36 -5.42 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 26 H 0.06 0.91 7.43 -51.93 -0.39 0.52 16 27 H 0.34 5.88 8.41 -39.29 -0.33 5.55 16 28 H 0.02 0.44 7.42 -51.93 -0.39 0.05 16 29 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 30 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.36 7.16 -51.93 -0.37 0.99 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -30.44 298.71 -7.60 -38.04 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.69 Total: 1.59 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.59 Total: -16.63 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.21 Total: -39.57 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.36 Total: -5.42 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.44 -7.60 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379649508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.799 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds