Wall clock time and date at job start Sun Mar 29 2020 21:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47078 * 2 1 4 4 H 1.09000 * 109.47333 * 54.62556 * 3 2 1 5 5 N 1.46901 * 109.47051 * 174.62541 * 3 2 1 6 6 C 1.46902 * 111.00202 * 273.30923 * 5 3 2 7 7 C 1.53000 * 109.47181 * 176.34319 * 6 5 3 8 8 C 1.50700 * 109.46779 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00159 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99561 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99887 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00213 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47326 * 270.00007 * 12 10 8 14 14 H 1.48494 * 109.47393 * 30.00235 * 12 10 8 15 15 H 1.48496 * 109.47425 * 150.00310 * 12 10 8 16 16 C 1.53001 * 109.47405 * 294.62218 * 3 2 1 17 17 H 1.09009 * 109.86757 * 63.99513 * 16 3 2 18 18 C 1.54102 * 109.88180 * 185.00196 * 16 3 2 19 19 C 1.54805 * 104.18762 * 121.45629 * 18 16 3 20 20 C 1.55000 * 102.09335 * 20.87946 * 19 18 16 21 21 O 1.43746 * 109.87826 * 302.83729 * 16 3 2 22 22 H 1.09001 * 109.46684 * 297.63000 * 1 2 3 23 23 H 1.08999 * 109.46940 * 57.62773 * 1 2 3 24 24 H 1.08995 * 109.47224 * 177.62624 * 1 2 3 25 25 H 1.09005 * 109.46767 * 239.99916 * 2 1 3 26 26 H 1.08991 * 109.47007 * 120.00277 * 2 1 3 27 27 H 1.00901 * 110.99972 * 37.26668 * 5 3 2 28 28 H 1.08999 * 109.46589 * 56.34902 * 6 5 3 29 29 H 1.08997 * 109.47030 * 296.34617 * 6 5 3 30 30 H 1.09005 * 109.46833 * 60.00310 * 7 6 5 31 31 H 1.08997 * 109.47381 * 300.00083 * 7 6 5 32 32 H 0.96995 * 120.00127 * 180.02562 * 11 10 8 33 33 H 1.09000 * 110.48536 * 240.13400 * 18 16 3 34 34 H 1.08995 * 110.48270 * 2.64435 * 18 16 3 35 35 H 1.08998 * 110.90954 * 139.07761 * 19 18 16 36 36 H 1.08994 * 110.91137 * 262.68487 * 19 18 16 37 37 H 1.09006 * 110.61335 * 81.48075 * 20 19 18 38 38 H 1.08994 * 110.61802 * 204.31287 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9834 0.8379 5 7 3.5033 1.4445 0.1297 6 6 3.9067 1.4088 1.5418 7 6 5.4313 1.3200 1.6346 8 6 5.8450 1.2828 3.0832 9 1 5.0956 1.3185 3.8599 10 6 7.1805 1.2032 3.4168 11 7 7.5416 1.1703 4.6811 12 14 8.4768 1.1408 2.0733 13 1 8.7401 -0.2735 1.7048 14 1 7.9902 1.8806 0.8812 15 1 9.7306 1.7656 2.5658 16 6 1.6434 2.1237 -1.3113 17 1 0.5576 2.1891 -1.3812 18 6 2.2586 3.5351 -1.3756 19 6 3.1246 3.5135 -2.6586 20 6 2.5001 2.3375 -3.4521 21 8 2.1639 1.3795 -2.4256 22 1 -0.3633 0.4766 0.9105 23 1 -0.3633 0.5502 -0.8680 24 1 -0.3633 -1.0267 -0.0426 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.9128 0.6779 -0.3828 28 1 3.4621 0.5387 2.0248 29 1 3.5646 2.3157 2.0404 30 1 5.8760 2.1902 1.1515 31 1 5.7735 0.4132 1.1360 32 1 8.4810 1.1146 4.9158 33 1 1.4757 4.2892 -1.4564 34 1 2.8777 3.7217 -0.4981 35 1 3.0275 4.4492 -3.2092 36 1 4.1685 3.3107 -2.4200 37 1 1.6045 2.6640 -3.9808 38 1 3.2246 1.9178 -4.1499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379649508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:29 Heat of formation + Delta-G solvation = -86.145788 kcal Electronic energy + Delta-G solvation = -16397.333351 eV Core-core repulsion = 13852.028582 eV Total energy + Delta-G solvation = -2545.304768 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61559 -37.84098 -35.47751 -33.91908 -32.86210 -31.35112 -29.87792 -26.66132 -24.82599 -23.71932 -22.41557 -22.02859 -21.06997 -18.97034 -17.27915 -17.02455 -16.50610 -16.17635 -16.16413 -15.25145 -15.05133 -14.84299 -14.45332 -14.32441 -14.09942 -13.41704 -13.15996 -12.87205 -12.83239 -12.55717 -12.38092 -12.07823 -11.91404 -11.82084 -11.76478 -11.70385 -11.54738 -11.42189 -11.22689 -10.77951 -10.41234 -9.18419 -8.30993 -6.35319 1.35358 1.37391 1.50680 2.35657 3.04596 3.07206 3.29695 3.79001 3.93231 4.08842 4.14720 4.23917 4.32358 4.40783 4.49210 4.53909 4.57122 4.67170 4.82531 4.89850 4.95045 4.96393 4.97696 5.08494 5.15522 5.24216 5.28036 5.32134 5.41598 5.49713 5.50169 5.63672 6.08353 6.22972 6.28449 6.54961 6.73669 7.29607 8.85759 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029108 B = 0.006557 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.719543 B = 4269.538926 C = 4841.688077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.086 3.914 4 H 0.081 0.919 5 N -0.677 5.677 6 C 0.089 3.911 7 C -0.003 4.003 8 C -0.533 4.533 9 H 0.032 0.968 10 C 0.006 3.994 11 N -0.951 5.951 12 Si 0.953 3.047 13 H -0.268 1.268 14 H -0.248 1.248 15 H -0.283 1.283 16 C 0.092 3.908 17 H 0.082 0.918 18 C -0.144 4.144 19 C -0.146 4.146 20 C 0.045 3.955 21 O -0.389 6.389 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.340 0.660 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.319 2.683 -17.312 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C -0.024 4.024 4 H 0.099 0.901 5 N -0.307 5.307 6 C -0.040 4.040 7 C -0.041 4.041 8 C -0.571 4.571 9 H 0.050 0.950 10 C -0.191 4.191 11 N -0.591 5.591 12 Si 0.776 3.224 13 H -0.193 1.193 14 H -0.172 1.172 15 H -0.208 1.208 16 C 0.034 3.966 17 H 0.099 0.901 18 C -0.182 4.182 19 C -0.184 4.184 20 C -0.031 4.031 21 O -0.308 6.308 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.157 0.843 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.100 3.145 -17.251 21.888 hybrid contribution 0.657 -0.872 0.554 1.224 sum -12.443 2.273 -16.697 20.947 Atomic orbital electron populations 1.21702 0.93994 1.02159 1.02117 1.22096 0.97967 0.97302 1.01233 1.21844 0.88030 0.95572 0.96993 0.90082 1.60566 1.08239 1.51002 1.10854 1.21640 0.95635 0.98666 0.88073 1.19423 0.93823 0.96464 0.94363 1.21413 0.92749 1.50385 0.92602 0.94982 1.25992 1.01229 0.94028 0.97866 1.70065 1.17695 1.52447 1.18923 0.85612 0.77725 0.79224 0.79793 1.19276 1.17183 1.20822 1.22799 0.97117 0.90762 0.85885 0.90080 1.22840 0.99655 0.96259 0.99430 1.23015 0.99866 0.99583 0.95926 1.23632 0.99446 0.89043 0.90974 1.88823 1.84072 1.31854 1.26098 0.92561 0.91657 0.92335 0.91712 0.93707 0.84251 0.96847 0.92601 0.95914 0.96790 0.92432 0.90018 0.91176 0.89087 0.92037 0.91039 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.73 71.98 0.70 -2.19 16 2 C -0.15 -3.80 5.29 30.59 0.16 -3.63 16 3 C 0.09 2.34 1.85 44.91 0.08 2.42 16 4 H 0.08 2.23 7.82 -2.39 -0.02 2.21 16 5 N -0.68 -22.48 5.25 -491.57 -2.58 -25.06 16 6 C 0.09 3.61 5.41 86.30 0.47 4.08 16 7 C 0.00 -0.14 4.26 29.85 0.13 -0.01 16 8 C -0.53 -31.53 9.66 25.60 0.25 -31.29 16 9 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 10 C 0.01 0.34 5.47 84.65 0.46 0.80 16 11 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 12 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 C 0.09 2.15 2.94 30.97 0.09 2.24 16 17 H 0.08 1.61 6.75 -2.38 -0.02 1.60 16 18 C -0.14 -3.22 6.35 31.58 0.20 -3.02 16 19 C -0.15 -2.99 7.15 31.89 0.23 -2.76 16 20 C 0.05 0.88 7.72 72.67 0.56 1.44 16 21 O -0.39 -9.78 10.25 -148.98 -1.53 -11.31 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.20 6.56 -2.39 -0.02 1.19 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.75 7.46 -2.38 -0.02 1.74 16 26 H 0.04 1.30 7.43 -2.39 -0.02 1.28 16 27 H 0.34 11.46 8.41 -89.69 -0.75 10.71 16 28 H 0.01 0.56 7.42 -2.39 -0.02 0.54 16 29 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 30 H 0.02 1.10 7.20 -2.38 -0.02 1.09 16 31 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.93 7.16 -2.39 -0.02 1.92 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.82 298.71 1.61 -64.21 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.21 Total: 17.05 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.33 Total: -31.92 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.28 Total: -85.37 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.53 Total: -11.31 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -65.82 1.61 -64.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379649508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.939 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds