Wall clock time and date at job start Sun Mar 29 2020 21:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46844 * 2 1 4 4 H 1.09005 * 109.47161 * 57.00247 * 3 2 1 5 5 N 1.46896 * 109.47561 * 297.00015 * 3 2 1 6 6 C 1.46899 * 111.00121 * 304.31079 * 5 3 2 7 7 C 1.52995 * 109.47432 * 173.68611 * 6 5 3 8 8 C 1.50701 * 109.47274 * 180.02562 * 7 6 5 9 9 H 1.07994 * 119.99876 * 0.26864 * 8 7 6 10 10 C 1.37882 * 119.99851 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00185 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99927 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46836 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47182 * 119.99637 * 12 10 8 15 15 H 1.48497 * 109.47186 * 239.99733 * 12 10 8 16 16 C 1.53005 * 109.47105 * 177.00005 * 3 2 1 17 17 H 1.09003 * 110.32895 * 295.92045 * 16 3 2 18 18 C 1.54479 * 110.37658 * 173.66832 * 16 3 2 19 19 C 1.54504 * 104.06254 * 217.19240 * 18 16 3 20 20 C 1.54477 * 104.06434 * 359.97438 * 19 18 16 21 21 O 1.44421 * 110.37106 * 58.16308 * 16 3 2 22 22 H 1.09008 * 109.47160 * 305.00448 * 1 2 3 23 23 H 1.08997 * 109.47495 * 65.00751 * 1 2 3 24 24 H 1.08998 * 109.47391 * 185.00945 * 1 2 3 25 25 H 1.09002 * 109.47013 * 240.00433 * 2 1 3 26 26 H 1.09002 * 109.47118 * 120.00467 * 2 1 3 27 27 H 1.00904 * 111.00041 * 180.35491 * 5 3 2 28 28 H 1.09001 * 109.46983 * 53.68118 * 6 5 3 29 29 H 1.09007 * 109.46707 * 293.68404 * 6 5 3 30 30 H 1.09001 * 109.47439 * 59.99786 * 7 6 5 31 31 H 1.09007 * 109.47006 * 299.99610 * 7 6 5 32 32 H 0.96995 * 120.00092 * 180.02562 * 11 10 8 33 33 H 1.09003 * 110.50777 * 335.83649 * 18 16 3 34 34 H 1.09003 * 110.50932 * 98.40494 * 18 16 3 35 35 H 1.08997 * 110.51114 * 118.64753 * 19 18 16 36 36 H 1.09005 * 110.50905 * 241.21573 * 19 18 16 37 37 H 1.09001 * 110.37157 * 142.81555 * 20 19 18 38 38 H 1.09005 * 110.37316 * 265.03715 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6333 1.9716 0.8619 5 7 1.6103 2.1138 -1.2340 6 6 2.0548 1.3699 -2.4201 7 6 1.4585 2.0088 -3.6759 8 6 1.9140 1.2452 -4.8927 9 1 2.5602 0.3871 -4.7811 10 6 1.5015 1.6390 -6.1480 11 7 0.7103 2.6808 -6.2835 12 14 2.0666 0.6930 -7.6564 13 1 2.9450 -0.4285 -7.2368 14 1 0.8838 0.1540 -8.3745 15 1 2.8208 1.6016 -8.5568 16 6 3.5681 1.4432 0.0755 17 1 3.9008 1.0127 1.0200 18 6 4.1138 2.8798 -0.0826 19 6 5.4062 2.7015 -0.9102 20 6 5.4889 1.1783 -1.1538 21 8 4.1267 0.7093 -1.0359 22 1 -0.3634 0.5895 0.8418 23 1 -0.3634 0.4342 -0.9314 24 1 -0.3634 -1.0237 0.0897 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9399 3.0671 -1.2605 28 1 1.7214 0.3347 -2.3458 29 1 3.1428 1.3978 -2.4799 30 1 1.7919 3.0439 -3.7503 31 1 0.3704 1.9808 -3.6162 32 1 0.4199 2.9576 -7.1666 33 1 3.3989 3.5028 -0.6201 34 1 4.3386 3.3123 0.8924 35 1 5.3303 3.2365 -1.8568 36 1 6.2721 3.0473 -0.3455 37 1 5.8756 0.9741 -2.1522 38 1 6.1195 0.7071 -0.3998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379649510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:33 Heat of formation + Delta-G solvation = -55.167248 kcal Electronic energy + Delta-G solvation = -16855.726886 eV Core-core repulsion = 14311.765448 eV Total energy + Delta-G solvation = -2543.961438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82908 -36.31131 -33.30571 -32.06046 -31.56105 -29.90892 -27.96491 -25.30547 -23.83309 -22.41009 -20.84390 -20.69102 -19.22652 -16.52576 -16.37659 -15.97695 -15.56849 -14.63982 -14.27343 -13.90356 -13.58706 -13.16853 -12.81107 -12.63030 -12.15051 -12.04534 -11.71743 -11.63622 -11.20611 -10.99352 -10.95824 -10.79136 -10.53357 -10.46698 -10.38377 -10.21363 -9.71247 -9.56006 -9.13185 -8.97716 -8.25064 -7.42096 -5.90011 -3.90783 3.36227 3.43459 3.48312 4.05090 4.52122 4.67088 4.78117 4.92583 5.02825 5.20146 5.28936 5.43953 5.45851 5.46790 5.61732 5.68402 5.78730 5.89728 5.96950 6.02034 6.08043 6.15292 6.23131 6.32028 6.60234 6.73227 6.82420 6.95579 7.03689 7.35626 7.66094 7.88528 7.97809 8.15332 8.25989 8.59925 9.17935 9.72161 11.21666 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.007917 C = 0.006841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.877467 B = 3535.976066 C = 4091.743164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.082 0.918 5 N -0.678 5.678 6 C 0.053 3.947 7 C 0.026 3.974 8 C -0.511 4.511 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.888 3.112 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.040 3.960 17 H 0.060 0.940 18 C -0.155 4.155 19 C -0.153 4.153 20 C 0.041 3.959 21 O -0.349 6.349 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.330 0.670 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.008 0.992 31 H 0.018 0.982 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -1.242 14.344 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.100 0.900 5 N -0.310 5.310 6 C -0.074 4.074 7 C -0.012 4.012 8 C -0.550 4.550 9 H 0.072 0.928 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.020 4.020 17 H 0.078 0.922 18 C -0.193 4.193 19 C -0.191 4.191 20 C -0.036 4.036 21 O -0.267 6.267 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.166 -1.587 14.072 15.445 hybrid contribution 1.443 -0.030 -0.757 1.630 sum 7.609 -1.617 13.314 15.420 Atomic orbital electron populations 1.21637 0.95335 1.00124 1.02752 1.21543 0.96534 0.95261 1.01949 1.21722 0.88862 0.96390 0.94754 0.89967 1.60808 1.63143 1.05317 1.01712 1.22498 0.98900 0.97222 0.88788 1.19068 0.96533 0.95356 0.90214 1.21253 1.29316 1.13166 0.91310 0.92793 1.25003 0.95322 0.95222 0.98973 1.69991 1.34954 1.25792 1.22829 0.86591 0.78475 0.80006 0.83258 1.19788 1.21090 1.21186 1.23933 0.97148 0.90591 0.90285 0.92224 1.23017 0.97754 0.98022 1.00481 1.22890 0.97652 0.97427 1.01114 1.23360 0.85449 0.92922 1.01880 1.89386 1.23982 1.63502 1.49854 0.93658 0.91036 0.93958 0.90479 0.92986 0.85011 0.92303 0.93097 0.97403 0.96339 0.93262 0.90173 0.91019 0.90362 0.91152 0.89116 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.72 37.16 0.36 -1.72 16 2 C -0.12 -1.73 4.85 -26.73 -0.13 -1.86 16 3 C 0.09 1.39 2.72 -67.71 -0.18 1.20 16 4 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 5 N -0.68 -12.26 5.81 -106.73 -0.62 -12.88 16 6 C 0.05 1.16 4.39 -3.83 -0.02 1.15 16 7 C 0.03 0.70 5.28 -27.89 -0.15 0.55 16 8 C -0.51 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 12 Si 0.89 22.27 29.54 -169.99 -5.02 17.24 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 C 0.04 0.55 3.06 -25.95 -0.08 0.47 16 17 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 18 C -0.15 -1.91 6.52 -25.17 -0.16 -2.07 16 19 C -0.15 -1.86 7.09 -25.17 -0.18 -2.04 16 20 C 0.04 0.54 7.61 37.93 0.29 0.83 16 21 O -0.35 -5.70 7.20 -35.23 -0.25 -5.95 16 22 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.35 5.67 -51.93 -0.29 1.05 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.33 5.74 6.44 -39.29 -0.25 5.49 16 28 H 0.06 1.34 5.81 -51.93 -0.30 1.04 16 29 H 0.05 1.13 5.39 -51.93 -0.28 0.85 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 1.08 5.62 -51.93 -0.29 0.78 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -31.15 293.49 -7.84 -38.99 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.44 Total: 2.34 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -0.66 Total: -17.23 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.12 Total: -39.81 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.25 Total: -5.95 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.15 -7.84 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379649510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.179 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds