Wall clock time and date at job start Sun Mar 29 2020 21:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 H 1.08998 * 109.47080 * 55.61338 * 3 2 1 5 5 N 1.46903 * 109.47202 * 295.61924 * 3 2 1 6 6 C 1.46911 * 110.99444 * 302.62564 * 5 3 2 7 7 C 1.52999 * 109.46819 * 184.89169 * 6 5 3 8 8 C 1.50697 * 109.47099 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00201 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99791 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00632 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99715 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47073 * 59.99974 * 12 10 8 14 14 H 1.48494 * 109.46896 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47078 * 299.99662 * 12 10 8 16 16 C 1.53003 * 109.47502 * 175.61771 * 3 2 1 17 17 H 1.08996 * 109.87040 * 58.98750 * 16 3 2 18 18 C 1.54099 * 109.88148 * 180.02562 * 16 3 2 19 19 C 1.54812 * 104.18788 * 121.45072 * 18 16 3 20 20 C 1.54993 * 102.09205 * 20.88317 * 19 18 16 21 21 O 1.43751 * 109.87453 * 297.83411 * 16 3 2 22 22 H 1.08994 * 109.47035 * 305.43347 * 1 2 3 23 23 H 1.09000 * 109.46762 * 65.43611 * 1 2 3 24 24 H 1.09003 * 109.46882 * 185.43601 * 1 2 3 25 25 H 1.09003 * 109.47328 * 239.99992 * 2 1 3 26 26 H 1.09000 * 109.46953 * 120.00313 * 2 1 3 27 27 H 1.00890 * 111.00376 * 66.57997 * 5 3 2 28 28 H 1.09002 * 109.46808 * 64.89453 * 6 5 3 29 29 H 1.08991 * 109.47108 * 304.89231 * 6 5 3 30 30 H 1.09010 * 109.47007 * 60.00253 * 7 6 5 31 31 H 1.08999 * 109.47568 * 300.00521 * 7 6 5 32 32 H 0.96997 * 120.00726 * 179.97438 * 11 10 8 33 33 H 1.08997 * 110.48453 * 240.12942 * 18 16 3 34 34 H 1.08994 * 110.48645 * 2.77607 * 18 16 3 35 35 H 1.08999 * 110.90669 * 139.07364 * 19 18 16 36 36 H 1.09002 * 110.90923 * 262.68313 * 19 18 16 37 37 H 1.09001 * 110.62374 * 81.47477 * 20 19 18 38 38 H 1.08999 * 110.61641 * 204.31814 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6139 1.9784 0.8481 5 7 1.6386 2.1037 -1.2488 6 6 2.1439 1.3717 -2.4181 7 6 1.8120 2.1526 -3.6912 8 6 2.3298 1.4015 -4.8906 9 1 2.8445 0.4613 -4.7581 10 6 2.1473 1.9150 -6.1571 11 7 1.5210 3.0600 -6.3185 12 14 2.7898 0.9842 -7.6439 13 1 2.1501 -0.3547 -7.7040 14 1 2.4686 1.7427 -8.8794 15 1 4.2618 0.8249 -7.5300 16 6 3.5661 1.4439 0.1102 17 1 3.9984 0.8939 -0.7256 18 6 4.0900 2.8931 0.1117 19 6 4.8610 3.0165 1.4485 20 6 5.1569 1.5340 1.7906 21 8 3.9668 0.8438 1.3535 22 1 -0.3633 0.5958 0.8373 23 1 -0.3633 0.4272 -0.9347 24 1 -0.3633 -1.0231 0.0974 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.6366 2.2115 -1.2951 28 1 1.6747 0.3888 -2.4619 29 1 3.2244 1.2551 -2.3346 30 1 2.2813 3.1356 -3.6472 31 1 0.7315 2.2693 -3.7746 32 1 1.3929 3.4215 -7.2095 33 1 4.7602 3.0572 -0.7320 34 1 3.2598 3.5989 0.0836 35 1 5.7863 3.5766 1.3135 36 1 4.2381 3.4760 2.2159 37 1 6.0297 1.1801 1.2417 38 1 5.3033 1.4096 2.8635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379649511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:34 Heat of formation + Delta-G solvation = -85.649342 kcal Electronic energy + Delta-G solvation = -16411.356879 eV Core-core repulsion = 13866.073638 eV Total energy + Delta-G solvation = -2545.283241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75993 -38.26459 -35.40593 -33.36735 -32.88898 -31.15318 -29.84913 -26.72362 -25.58656 -23.37605 -23.03862 -21.93503 -20.57063 -18.50536 -17.58190 -17.11568 -16.74998 -16.37838 -15.96486 -15.39255 -15.12220 -14.59833 -14.44385 -14.31216 -13.92813 -13.39022 -13.26181 -12.95063 -12.85399 -12.56528 -12.45590 -12.30391 -12.07885 -11.97839 -11.72926 -11.53139 -11.44352 -11.34432 -11.19940 -10.57154 -10.51323 -9.23337 -8.19584 -6.30773 1.39738 1.42606 1.50599 2.40340 2.80563 3.13732 3.56724 3.67770 3.76222 4.00677 4.11499 4.18931 4.22447 4.37673 4.51557 4.55325 4.62556 4.64836 4.73872 4.86643 4.91337 4.98613 5.02787 5.07989 5.12948 5.18841 5.24859 5.33068 5.35672 5.47593 5.70807 5.79252 5.97806 6.17860 6.29721 6.55605 6.86493 7.38283 8.92220 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028848 B = 0.006215 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.362777 B = 4504.430327 C = 4941.245848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.096 3.904 4 H 0.092 0.908 5 N -0.680 5.680 6 C 0.083 3.917 7 C 0.035 3.965 8 C -0.545 4.545 9 H 0.057 0.943 10 C 0.003 3.997 11 N -0.930 5.930 12 Si 0.963 3.037 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.085 3.915 17 H 0.048 0.952 18 C -0.141 4.141 19 C -0.148 4.148 20 C 0.040 3.960 21 O -0.390 6.390 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.345 0.655 28 H 0.021 0.979 29 H 0.055 0.945 30 H -0.006 1.006 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -2.927 16.163 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C -0.015 4.015 4 H 0.110 0.890 5 N -0.312 5.312 6 C -0.046 4.046 7 C -0.002 4.002 8 C -0.583 4.583 9 H 0.075 0.925 10 C -0.195 4.195 11 N -0.570 5.570 12 Si 0.787 3.213 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.193 1.193 16 C 0.027 3.973 17 H 0.066 0.934 18 C -0.179 4.179 19 C -0.186 4.186 20 C -0.036 4.036 21 O -0.309 6.309 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.430 -2.528 16.160 16.946 hybrid contribution -0.304 -0.850 -1.306 1.588 sum 4.126 -3.378 14.854 15.782 Atomic orbital electron populations 1.21731 0.94810 1.02353 1.01609 1.22139 0.97005 0.98146 1.01991 1.21613 0.93685 0.93293 0.92872 0.88966 1.60538 1.18190 1.51452 1.01004 1.21801 0.98577 0.94523 0.89677 1.18883 0.94810 0.94891 0.91658 1.21577 1.37142 1.07052 0.92572 0.92488 1.25927 0.95360 0.95864 1.02345 1.70089 1.43136 1.20322 1.23477 0.85535 0.79083 0.78664 0.77969 1.19230 1.20690 1.19262 1.22620 0.94738 0.93657 0.86326 0.93438 1.22804 1.00630 0.96245 0.98197 1.23149 1.01363 0.97374 0.96676 1.23744 0.87635 0.90815 1.01422 1.88787 1.44547 1.59169 1.38424 0.91384 0.93891 0.91902 0.93332 0.90867 0.83620 0.96093 0.92689 0.98711 0.99105 0.92746 0.92021 0.90099 0.88875 0.89839 0.92097 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.54 71.98 0.69 -3.00 16 2 C -0.15 -4.35 5.04 30.59 0.15 -4.19 16 3 C 0.10 2.81 2.15 44.91 0.10 2.91 16 4 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 5 N -0.68 -23.75 5.74 -491.55 -2.82 -26.57 16 6 C 0.08 3.51 4.79 86.30 0.41 3.92 16 7 C 0.04 1.88 5.27 29.85 0.16 2.04 16 8 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 9 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 10 C 0.00 0.18 5.46 84.66 0.46 0.65 16 11 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 12 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 C 0.08 2.51 2.65 30.97 0.08 2.59 16 17 H 0.05 1.61 6.43 -2.39 -0.02 1.60 16 18 C -0.14 -3.83 6.35 31.58 0.20 -3.63 16 19 C -0.15 -2.95 7.15 31.89 0.23 -2.72 16 20 C 0.04 0.81 7.72 72.66 0.56 1.38 16 21 O -0.39 -10.76 10.55 -148.98 -1.57 -12.33 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.18 7.19 -2.39 -0.02 1.16 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.56 6.23 -2.39 -0.01 1.54 16 26 H 0.07 1.99 7.64 -2.39 -0.02 1.98 16 27 H 0.34 11.63 7.57 -89.70 -0.68 10.95 16 28 H 0.02 0.89 6.45 -2.39 -0.02 0.87 16 29 H 0.05 2.36 6.16 -2.39 -0.01 2.35 16 30 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.34 7.46 -2.39 -0.02 2.32 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.83 298.27 1.53 -62.30 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.34 Total: 18.06 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 3.28 Total: -31.27 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.54 Total: -83.38 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.57 Total: -12.33 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.83 1.53 -62.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379649511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.350 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds