Wall clock time and date at job start Sun Mar 29 2020 21:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47223 * 2 1 4 4 H 1.09001 * 109.47099 * 305.21707 * 3 2 1 5 5 C 1.50698 * 109.47139 * 185.21509 * 3 2 1 6 6 H 1.07998 * 119.99898 * 295.07350 * 5 3 2 7 7 C 1.37881 * 119.99798 * 115.34560 * 5 3 2 8 8 N 1.31513 * 119.99629 * 184.32720 * 7 5 3 9 9 Si 1.86797 * 120.00036 * 4.32103 * 7 5 3 10 10 H 1.48503 * 109.46980 * 84.62892 * 9 7 5 11 11 H 1.48499 * 109.47360 * 204.62632 * 9 7 5 12 12 H 1.48502 * 109.47273 * 324.63279 * 9 7 5 13 13 N 1.46899 * 109.46814 * 65.21962 * 3 2 1 14 14 C 1.48527 * 111.00329 * 62.60364 * 13 3 2 15 15 C 1.54931 * 103.22930 * 159.72213 * 14 13 3 16 16 C 1.54597 * 102.92142 * 322.58530 * 15 14 13 17 17 C 1.53004 * 110.30834 * 263.04111 * 16 15 14 18 18 C 1.53000 * 110.39506 * 140.91692 * 16 15 14 19 19 O 1.42902 * 109.47144 * 64.23373 * 18 16 15 20 20 C 1.47897 * 110.99837 * 180.02562 * 13 3 2 21 21 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46871 * 299.99925 * 1 2 3 23 23 H 1.09001 * 109.47164 * 59.99796 * 1 2 3 24 24 H 1.09003 * 109.46838 * 240.00631 * 2 1 3 25 25 H 1.09001 * 109.47164 * 120.00204 * 2 1 3 26 26 H 0.97009 * 119.99451 * 180.02562 * 8 7 5 27 27 H 1.09005 * 110.66702 * 278.15129 * 14 13 3 28 28 H 1.08994 * 110.67157 * 41.28264 * 14 13 3 29 29 H 1.09007 * 110.72684 * 204.22729 * 15 14 13 30 30 H 1.09003 * 110.88306 * 81.01076 * 15 14 13 31 31 H 1.09004 * 109.46933 * 175.70842 * 17 16 15 32 32 H 1.08994 * 109.47251 * 295.71271 * 17 16 15 33 33 H 1.09004 * 109.46591 * 55.71661 * 17 16 15 34 34 H 1.08999 * 109.47067 * 184.23304 * 18 16 15 35 35 H 1.08993 * 109.47048 * 304.23433 * 18 16 15 36 36 H 0.96698 * 113.99768 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.91930 * 333.50659 * 20 13 3 38 38 H 1.09001 * 109.92284 * 94.60154 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 -0.8396 5 6 3.5414 1.4444 -0.1291 6 1 4.1515 1.0233 0.6562 7 6 4.1365 1.9890 -1.2474 8 7 5.4406 1.9149 -1.4003 9 14 3.0902 2.8317 -2.5453 10 1 2.8526 4.2432 -2.1497 11 1 3.7971 2.7959 -3.8508 12 1 1.7892 2.1262 -2.6672 13 7 1.6559 2.0976 1.2575 14 6 2.2859 1.4250 2.4222 15 6 2.2226 2.5043 3.5319 16 6 2.4942 3.8138 2.7564 17 6 3.9705 4.2002 2.8674 18 6 1.6094 4.9425 3.2894 19 8 1.9592 5.2215 4.6466 20 6 2.1326 3.4972 1.2931 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 5.8592 2.2983 -2.1869 27 1 1.7157 0.5421 2.7114 28 1 3.3200 1.1609 2.2010 29 1 2.9950 2.3327 4.2816 30 1 1.2361 2.5280 3.9950 31 1 4.1626 5.0810 2.2547 32 1 4.2111 4.4213 3.9072 33 1 4.5896 3.3733 2.5190 34 1 1.7580 5.8371 2.6846 35 1 0.5638 4.6392 3.2387 36 1 1.4374 5.9288 5.0497 37 1 3.0140 3.6055 0.6611 38 1 1.3446 4.1669 0.9486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381619418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:56 Heat of formation + Delta-G solvation = -58.196340 kcal Electronic energy + Delta-G solvation = -17231.970964 eV Core-core repulsion = 14687.878175 eV Total energy + Delta-G solvation = -2544.092789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08888 -36.55829 -34.36957 -32.13795 -30.86720 -28.95928 -26.96805 -26.09553 -24.19858 -22.54862 -21.44039 -18.82774 -18.37214 -17.11631 -16.90920 -15.29337 -14.86865 -14.44268 -14.21605 -13.70160 -12.96767 -12.87600 -12.60295 -12.31222 -12.17960 -11.91202 -11.76376 -11.49677 -11.25504 -10.94857 -10.87223 -10.46382 -10.26562 -10.09643 -9.95212 -9.90497 -9.66527 -9.62838 -9.52596 -9.15692 -8.60534 -7.11836 -6.15175 -4.16476 3.22637 3.31926 3.33314 4.34271 4.46086 5.01705 5.17570 5.26061 5.32734 5.52360 5.75244 5.82098 5.99450 5.99980 6.08541 6.11192 6.21717 6.28092 6.34660 6.45875 6.57970 6.63589 6.67840 6.75420 6.76606 6.85008 6.97477 6.99890 7.05577 7.22338 7.26903 7.60354 7.79814 7.99532 8.28121 8.45374 8.90487 9.48730 10.97267 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.010855 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.138919 B = 2578.930060 C = 3111.536563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.158 3.842 4 H 0.047 0.953 5 C -0.535 4.535 6 H 0.077 0.923 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.514 5.514 14 C 0.037 3.963 15 C -0.103 4.103 16 C -0.065 4.065 17 C -0.129 4.129 18 C 0.091 3.909 19 O -0.571 6.571 20 C 0.046 3.954 21 H 0.032 0.968 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.073 0.927 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 4.213 7.104 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C 0.051 3.949 4 H 0.065 0.935 5 C -0.574 4.574 6 H 0.095 0.905 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.238 5.238 14 C -0.091 4.091 15 C -0.141 4.141 16 C -0.066 4.066 17 C -0.187 4.187 18 C 0.014 3.986 19 O -0.375 6.375 20 C -0.082 4.082 21 H 0.051 0.949 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.215 0.785 37 H 0.091 0.909 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.903 3.738 6.863 11.115 hybrid contribution 0.079 1.004 -0.905 1.354 sum -7.825 4.742 5.958 10.918 Atomic orbital electron populations 1.21763 0.97813 0.99175 1.01409 1.21587 0.93409 0.98530 1.00746 1.20007 0.94499 0.91457 0.88966 0.93472 1.21504 0.90670 1.39450 1.05801 0.90518 1.25110 0.94700 0.95324 0.97474 1.69924 1.09393 1.45012 1.28829 0.86971 0.81044 0.80652 0.81519 1.19986 1.21573 1.18816 1.65223 1.53499 1.01099 1.03959 1.23089 0.99394 0.96104 0.90487 1.22459 1.00642 0.94001 0.97047 1.21366 0.95372 0.94141 0.95717 1.21751 0.94752 1.01337 1.00848 1.22316 0.97432 0.97030 0.81858 1.86512 1.64465 1.59168 1.27343 1.22745 0.99856 0.91677 0.93930 0.94875 0.92298 0.94122 0.92837 0.93140 0.92644 0.92003 0.92020 0.92104 0.92081 0.93458 0.92789 0.91842 0.94241 0.93641 0.78477 0.90863 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.21 16 2 C -0.10 -2.18 5.29 -26.73 -0.14 -2.32 16 3 C 0.16 3.63 1.79 -68.87 -0.12 3.51 16 4 H 0.05 1.14 4.52 -51.93 -0.23 0.91 16 5 C -0.54 -14.23 6.71 -34.44 -0.23 -14.46 16 6 H 0.08 2.24 6.41 -52.49 -0.34 1.91 16 7 C 0.08 2.14 5.29 -17.82 -0.09 2.04 16 8 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 9 Si 0.87 21.12 27.23 -169.99 -4.63 16.49 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.20 6.40 56.52 0.36 -5.84 16 13 N -0.51 -10.69 4.76 -223.88 -1.07 -11.75 16 14 C 0.04 0.73 5.35 -1.90 -0.01 0.72 16 15 C -0.10 -1.79 5.96 -24.87 -0.15 -1.94 16 16 C -0.07 -1.14 0.77 -153.13 -0.12 -1.26 16 17 C -0.13 -2.33 8.07 37.16 0.30 -2.03 16 18 C 0.09 1.33 5.61 37.16 0.21 1.54 16 19 O -0.57 -7.73 12.71 -35.23 -0.45 -8.18 16 20 C 0.05 0.94 5.79 -2.74 -0.02 0.92 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.03 6.75 -51.93 -0.35 0.68 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.06 1.14 7.55 -51.93 -0.39 0.75 16 28 H 0.06 1.37 5.76 -51.93 -0.30 1.07 16 29 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 30 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.91 7.62 -51.93 -0.40 0.51 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.37 3.15 9.12 45.56 0.42 3.56 16 37 H 0.07 1.72 5.94 -51.93 -0.31 1.41 16 38 H 0.05 1.01 7.69 -51.93 -0.40 0.61 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -29.15 289.80 -6.66 -35.81 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.65 Total: 4.44 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.01 Total: -15.49 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.29 Total: -37.44 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.45 Total: -8.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.63 Total: 16.49 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.15 -6.66 -35.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381619418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.383 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds