Wall clock time and date at job start Sun Mar 29 2020 21:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47223 * 2 1 4 4 H 1.09001 * 109.47099 * 305.21707 * 3 2 1 5 5 C 1.50698 * 109.47139 * 185.21509 * 3 2 1 6 6 H 1.07998 * 119.99898 * 295.07350 * 5 3 2 7 7 C 1.37881 * 119.99798 * 115.34560 * 5 3 2 8 8 N 1.31513 * 119.99629 * 184.32720 * 7 5 3 9 9 Si 1.86797 * 120.00036 * 4.32103 * 7 5 3 10 10 H 1.48503 * 109.46980 * 84.62892 * 9 7 5 11 11 H 1.48499 * 109.47360 * 204.62632 * 9 7 5 12 12 H 1.48502 * 109.47273 * 324.63279 * 9 7 5 13 13 N 1.46899 * 109.46814 * 65.21962 * 3 2 1 14 14 C 1.48527 * 111.00329 * 62.60364 * 13 3 2 15 15 C 1.54931 * 103.22930 * 159.72213 * 14 13 3 16 16 C 1.54597 * 102.92142 * 322.58530 * 15 14 13 17 17 C 1.53004 * 110.30834 * 263.04111 * 16 15 14 18 18 C 1.53000 * 110.39506 * 140.91692 * 16 15 14 19 19 O 1.42902 * 109.47144 * 64.23373 * 18 16 15 20 20 C 1.47897 * 110.99837 * 180.02562 * 13 3 2 21 21 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46871 * 299.99925 * 1 2 3 23 23 H 1.09001 * 109.47164 * 59.99796 * 1 2 3 24 24 H 1.09003 * 109.46838 * 240.00631 * 2 1 3 25 25 H 1.09001 * 109.47164 * 120.00204 * 2 1 3 26 26 H 0.97009 * 119.99451 * 180.02562 * 8 7 5 27 27 H 1.09005 * 110.66702 * 278.15129 * 14 13 3 28 28 H 1.08994 * 110.67157 * 41.28264 * 14 13 3 29 29 H 1.09007 * 110.72684 * 204.22729 * 15 14 13 30 30 H 1.09003 * 110.88306 * 81.01076 * 15 14 13 31 31 H 1.09004 * 109.46933 * 175.70842 * 17 16 15 32 32 H 1.08994 * 109.47251 * 295.71271 * 17 16 15 33 33 H 1.09004 * 109.46591 * 55.71661 * 17 16 15 34 34 H 1.08999 * 109.47067 * 184.23304 * 18 16 15 35 35 H 1.08993 * 109.47048 * 304.23433 * 18 16 15 36 36 H 0.96698 * 113.99768 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.91930 * 333.50659 * 20 13 3 38 38 H 1.09001 * 109.92284 * 94.60154 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 -0.8396 5 6 3.5414 1.4444 -0.1291 6 1 4.1515 1.0233 0.6562 7 6 4.1365 1.9890 -1.2474 8 7 5.4406 1.9149 -1.4003 9 14 3.0902 2.8317 -2.5453 10 1 2.8526 4.2432 -2.1497 11 1 3.7971 2.7959 -3.8508 12 1 1.7892 2.1262 -2.6672 13 7 1.6559 2.0976 1.2575 14 6 2.2859 1.4250 2.4222 15 6 2.2226 2.5043 3.5319 16 6 2.4942 3.8138 2.7564 17 6 3.9705 4.2002 2.8674 18 6 1.6094 4.9425 3.2894 19 8 1.9592 5.2215 4.6466 20 6 2.1326 3.4972 1.2931 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 5.8592 2.2983 -2.1869 27 1 1.7157 0.5421 2.7114 28 1 3.3200 1.1609 2.2010 29 1 2.9950 2.3327 4.2816 30 1 1.2361 2.5280 3.9950 31 1 4.1626 5.0810 2.2547 32 1 4.2111 4.4213 3.9072 33 1 4.5896 3.3733 2.5190 34 1 1.7580 5.8371 2.6846 35 1 0.5638 4.6392 3.2387 36 1 1.4374 5.9288 5.0497 37 1 3.0140 3.6055 0.6611 38 1 1.3446 4.1669 0.9486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381619418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:56 Heat of formation + Delta-G solvation = -79.921933 kcal Electronic energy + Delta-G solvation = -17232.913056 eV Core-core repulsion = 14687.878175 eV Total energy + Delta-G solvation = -2545.034882 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62816 -37.86398 -35.87726 -34.18976 -32.38195 -30.55641 -28.75967 -27.50048 -25.78290 -24.22342 -23.04678 -20.58732 -19.88717 -18.98712 -18.09959 -17.01286 -16.38417 -16.08159 -15.67166 -15.21998 -14.83400 -14.44762 -14.20711 -13.98368 -13.71709 -13.39247 -13.35668 -13.06810 -12.78574 -12.76891 -12.53015 -12.05491 -11.82419 -11.79240 -11.55454 -11.40118 -11.37910 -11.20970 -11.06423 -10.74031 -10.68148 -8.91940 -8.30714 -6.34674 1.29530 1.31376 1.40570 2.30123 3.01719 3.35515 3.54750 3.83964 3.86549 4.20398 4.36049 4.44622 4.51096 4.56903 4.63160 4.66958 4.70108 4.80858 4.86477 4.92837 4.96799 5.04960 5.13619 5.23702 5.26143 5.30153 5.37104 5.39970 5.50005 5.52623 5.60560 5.67316 6.17462 6.40895 6.46431 6.75066 7.02354 7.33552 8.85395 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.010855 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.138919 B = 2578.930060 C = 3111.536563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C 0.160 3.840 4 H 0.043 0.957 5 C -0.524 4.524 6 H 0.035 0.965 7 C 0.022 3.978 8 N -0.944 5.944 9 Si 0.928 3.072 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.247 1.247 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.094 4.094 16 C -0.067 4.067 17 C -0.122 4.122 18 C 0.101 3.899 19 O -0.583 6.583 20 C 0.043 3.957 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.034 0.966 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 5.193 7.855 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C 0.053 3.947 4 H 0.060 0.940 5 C -0.563 4.563 6 H 0.053 0.947 7 C -0.177 4.177 8 N -0.584 5.584 9 Si 0.753 3.247 10 H -0.189 1.189 11 H -0.217 1.217 12 H -0.171 1.171 13 N -0.227 5.227 14 C -0.090 4.090 15 C -0.131 4.131 16 C -0.067 4.067 17 C -0.179 4.179 18 C 0.023 3.977 19 O -0.391 6.391 20 C -0.085 4.085 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.244 0.756 37 H 0.053 0.947 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.816 4.729 7.642 14.062 hybrid contribution 1.038 0.664 -1.027 1.604 sum -9.778 5.393 6.615 12.979 Atomic orbital electron populations 1.21646 0.94711 1.00967 1.01719 1.21522 0.96093 0.96622 1.00081 1.19950 0.91735 0.93088 0.89977 0.93957 1.21669 0.92603 1.37810 1.04239 0.94666 1.25878 0.95645 0.96261 0.99880 1.70070 1.11382 1.47120 1.29858 0.86034 0.79954 0.80110 0.78620 1.18934 1.21656 1.17058 1.65213 1.52871 1.01435 1.03185 1.23068 0.97300 0.97528 0.91071 1.22408 1.01808 0.92769 0.96161 1.21346 0.95421 0.95779 0.94198 1.21660 0.95018 0.99868 1.01383 1.22085 0.96973 0.95998 0.82611 1.86441 1.65434 1.60571 1.26649 1.22774 0.98755 0.91646 0.95338 0.92411 0.91838 0.93876 0.94087 0.93402 0.92758 0.90583 0.95743 0.91856 0.90071 0.93374 0.91471 0.95479 0.93190 0.92227 0.75615 0.94744 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.80 71.98 0.71 -3.65 16 2 C -0.10 -4.28 5.29 30.59 0.16 -4.11 16 3 C 0.16 7.33 1.79 44.17 0.08 7.41 16 4 H 0.04 1.99 4.52 -2.39 -0.01 1.98 16 5 C -0.52 -28.90 6.71 25.60 0.17 -28.72 16 6 H 0.04 2.20 6.41 -2.91 -0.02 2.18 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 9 Si 0.93 43.79 27.23 68.60 1.87 45.66 16 10 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.25 -10.89 6.40 99.48 0.64 -10.25 16 13 N -0.50 -20.41 4.76 -862.21 -4.11 -24.52 16 14 C 0.04 1.49 5.35 86.65 0.46 1.95 16 15 C -0.09 -3.08 5.96 31.80 0.19 -2.89 16 16 C -0.07 -2.23 0.77 -51.29 -0.04 -2.27 16 17 C -0.12 -4.38 8.07 71.98 0.58 -3.80 16 18 C 0.10 2.59 5.61 71.98 0.40 3.00 16 19 O -0.58 -13.60 12.71 -148.98 -1.89 -15.50 16 20 C 0.04 1.71 5.79 86.46 0.50 2.21 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 2.02 7.76 -2.39 -0.02 2.00 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.94 6.75 -2.39 -0.02 1.93 16 26 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.08 2.71 7.55 -2.38 -0.02 2.69 16 28 H 0.02 1.13 5.76 -2.39 -0.01 1.12 16 29 H 0.06 2.06 7.85 -2.38 -0.02 2.04 16 30 H 0.08 2.38 7.85 -2.39 -0.02 2.36 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.20 7.62 -2.39 -0.02 2.19 16 33 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16 36 H 0.39 5.05 9.12 -74.06 -0.68 4.38 16 37 H 0.03 1.63 5.94 -2.39 -0.01 1.62 16 38 H 0.07 2.55 7.69 -2.39 -0.02 2.53 16 Total: -1.00 -64.54 289.80 0.12 -64.42 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.28 Total: 17.16 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 3.66 Total: -29.20 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.81 Total: -82.55 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.89 Total: -15.50 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.87 Total: 45.66 kcal Total: -64.54 0.12 -64.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381619418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.500 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds