Wall clock time and date at job start Sun Mar 29 2020 21:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 H 1.08995 * 109.47177 * 54.99817 * 3 2 1 5 5 C 1.50705 * 109.47182 * 174.99624 * 3 2 1 6 6 H 1.07999 * 119.99833 * 119.99669 * 5 3 2 7 7 C 1.37870 * 120.00233 * 300.00246 * 5 3 2 8 8 N 1.31522 * 120.00006 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00251 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46829 * 90.00163 * 9 7 5 11 11 H 1.48494 * 109.47539 * 210.00191 * 9 7 5 12 12 H 1.48500 * 109.47200 * 330.00474 * 9 7 5 13 13 N 1.46899 * 109.47247 * 294.99711 * 3 2 1 14 14 C 1.48560 * 111.00103 * 290.41898 * 13 3 2 15 15 C 1.54379 * 104.59568 * 200.95839 * 14 13 3 16 16 C 1.54266 * 105.05876 * 23.85076 * 15 14 13 17 17 C 1.52997 * 110.32556 * 241.10254 * 16 15 14 18 18 C 1.53007 * 110.40594 * 118.93946 * 16 15 14 19 19 O 1.42904 * 109.47054 * 62.88785 * 18 16 15 20 20 C 1.48564 * 111.00139 * 174.99823 * 13 3 2 21 21 H 1.09006 * 109.46816 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47447 * 300.00125 * 1 2 3 23 23 H 1.08998 * 109.47208 * 60.00298 * 1 2 3 24 24 H 1.08999 * 109.47447 * 239.99874 * 2 1 3 25 25 H 1.08998 * 109.47208 * 119.99701 * 2 1 3 26 26 H 0.97000 * 120.00142 * 180.02562 * 8 7 5 27 27 H 1.09000 * 110.40951 * 319.73727 * 14 13 3 28 28 H 1.08999 * 110.40863 * 82.05964 * 14 13 3 29 29 H 1.09002 * 110.32524 * 264.95800 * 15 14 13 30 30 H 1.08997 * 110.32362 * 142.74502 * 15 14 13 31 31 H 1.09002 * 109.47153 * 175.63880 * 17 16 15 32 32 H 1.09001 * 109.46832 * 55.64071 * 17 16 15 33 33 H 1.09004 * 109.47261 * 295.64053 * 17 16 15 34 34 H 1.08994 * 109.47096 * 182.88497 * 18 16 15 35 35 H 1.08994 * 109.47350 * 302.88765 * 18 16 15 36 36 H 0.96695 * 113.99733 * 180.02562 * 19 18 16 37 37 H 1.09003 * 110.40566 * 40.26599 * 20 13 3 38 38 H 1.09000 * 110.41193 * 277.82184 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8803 1.3813 10 1 6.4425 2.1132 2.0839 11 1 6.4391 -0.3107 2.1546 12 1 6.6131 0.8399 0.0272 13 7 1.6513 2.0993 -1.2552 14 6 2.4048 1.5373 -2.4056 15 6 2.3184 2.6262 -3.4966 16 6 2.0684 3.9418 -2.7308 17 6 0.7329 4.5572 -3.1536 18 6 3.2102 4.9294 -2.9799 19 8 3.2546 5.2658 -4.3681 20 6 2.0248 3.5372 -1.2417 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8292 -0.0611 2.9499 27 1 3.4437 1.3584 -2.1286 28 1 1.9396 0.6137 -2.7500 29 1 1.4897 2.4189 -4.1736 30 1 3.2556 2.6826 -4.0502 31 1 0.5337 5.4428 -2.5500 32 1 -0.0653 3.8297 -3.0059 33 1 0.7789 4.8375 -4.2059 34 1 3.0442 5.8323 -2.3925 35 1 4.1555 4.4734 -2.6861 36 1 3.9566 5.8893 -4.5994 37 1 3.0043 3.6711 -0.7825 38 1 1.2722 4.1204 -0.7111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381619420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:58 Heat of formation + Delta-G solvation = -58.004200 kcal Electronic energy + Delta-G solvation = -17071.465764 eV Core-core repulsion = 14527.381306 eV Total energy + Delta-G solvation = -2544.084458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.06565 -36.51068 -34.40159 -31.90890 -30.71946 -28.84845 -26.51029 -26.25726 -24.15507 -22.71108 -21.13919 -19.09992 -18.29047 -17.07577 -16.40556 -15.35874 -14.89738 -14.32744 -14.02138 -13.29240 -13.21645 -12.93296 -12.74694 -12.31198 -12.11891 -11.88442 -11.38551 -11.26535 -10.98542 -10.81627 -10.58536 -10.57384 -10.29027 -10.16454 -9.99122 -9.86038 -9.70207 -9.60616 -9.38163 -9.06230 -8.36278 -7.17893 -6.00036 -4.12826 3.24222 3.32142 3.34224 4.36895 4.39868 5.06991 5.17211 5.24492 5.38857 5.52885 5.73165 5.80412 5.84707 6.07747 6.14293 6.17882 6.38675 6.44097 6.50591 6.52903 6.60733 6.68878 6.72859 6.81660 6.83804 6.98182 7.12126 7.20472 7.35222 7.60076 7.74876 7.76357 7.98500 8.15141 8.24576 8.44893 8.97742 9.53792 10.99531 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.009784 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.500693 B = 2861.097799 C = 3645.139811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.202 3.798 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.505 5.505 14 C 0.031 3.969 15 C -0.107 4.107 16 C -0.065 4.065 17 C -0.124 4.124 18 C 0.088 3.912 19 O -0.571 6.571 20 C 0.048 3.952 21 H 0.024 0.976 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.091 0.909 26 H 0.261 0.739 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.371 0.629 37 H 0.054 0.946 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 6.401 -8.158 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.229 5.229 14 C -0.097 4.097 15 C -0.145 4.145 16 C -0.066 4.066 17 C -0.181 4.181 18 C 0.010 3.990 19 O -0.376 6.376 20 C -0.080 4.080 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.217 0.783 37 H 0.073 0.927 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.367 5.789 -8.022 10.172 hybrid contribution 2.518 0.435 0.447 2.594 sum 0.151 6.224 -7.575 9.805 Atomic orbital electron populations 1.21710 0.98899 0.98387 1.00564 1.21523 0.92214 0.99043 1.01827 1.19381 0.93116 0.91462 0.86526 0.94489 1.21720 0.92859 1.38204 1.05397 0.92281 1.24913 0.97737 0.95059 0.95717 1.69881 1.34760 1.38195 1.09381 0.86702 0.86286 0.77571 0.78088 1.20760 1.21159 1.20040 1.65709 1.51252 1.00861 1.05087 1.23068 0.99014 0.96525 0.91089 1.22340 1.00792 0.93906 0.97508 1.21331 0.94225 0.94443 0.96578 1.21701 0.96165 0.99778 1.00493 1.22295 0.98167 0.97181 0.81364 1.86484 1.57682 1.67503 1.25905 1.22953 1.00245 0.92144 0.92699 0.95643 0.94282 0.93339 0.95087 0.89074 0.92897 0.91989 0.91940 0.92154 0.92262 0.93641 0.92194 0.92818 0.94026 0.93622 0.78309 0.92737 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.15 0.36 -2.51 16 2 C -0.11 -2.58 5.24 -26.73 -0.14 -2.72 16 3 C 0.20 4.97 1.76 -68.86 -0.12 4.85 16 4 H 0.04 1.01 8.13 -51.93 -0.42 0.59 16 5 C -0.54 -14.26 6.56 -34.44 -0.23 -14.49 16 6 H 0.06 1.55 5.65 -52.49 -0.30 1.26 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.51 -10.77 4.82 -223.40 -1.08 -11.84 16 14 C 0.03 0.63 5.48 -2.18 -0.01 0.62 16 15 C -0.11 -1.85 6.10 -25.35 -0.15 -2.01 16 16 C -0.07 -1.07 0.83 -153.12 -0.13 -1.20 16 17 C -0.12 -1.87 8.10 37.16 0.30 -1.57 16 18 C 0.09 1.27 5.65 37.16 0.21 1.48 16 19 O -0.57 -7.60 12.60 -35.23 -0.44 -8.04 16 20 C 0.05 0.93 5.40 -2.18 -0.01 0.92 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.98 7.75 -51.93 -0.40 0.57 16 24 H 0.03 0.73 7.03 -51.93 -0.37 0.37 16 25 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.06 1.38 5.53 -51.93 -0.29 1.09 16 28 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 29 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 30 H 0.06 1.00 7.57 -51.93 -0.39 0.60 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.37 3.16 9.12 45.56 0.42 3.58 16 37 H 0.05 1.15 6.35 -51.93 -0.33 0.82 16 38 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 LS Contribution 290.89 15.07 4.38 4.38 Total: -1.00 -28.13 290.89 -7.21 -35.33 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.66 Total: 3.27 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.01 Total: -14.88 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.45 Total: -35.90 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.44 Total: -8.04 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.13 -7.21 -35.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381619420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.671 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds