Wall clock time and date at job start Sun Mar 29 2020 21:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 H 1.08995 * 109.47177 * 54.99817 * 3 2 1 5 5 C 1.50705 * 109.47182 * 174.99624 * 3 2 1 6 6 H 1.07999 * 119.99833 * 119.99669 * 5 3 2 7 7 C 1.37870 * 120.00233 * 300.00246 * 5 3 2 8 8 N 1.31522 * 120.00006 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00251 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46829 * 90.00163 * 9 7 5 11 11 H 1.48494 * 109.47539 * 210.00191 * 9 7 5 12 12 H 1.48500 * 109.47200 * 330.00474 * 9 7 5 13 13 N 1.46899 * 109.47247 * 294.99711 * 3 2 1 14 14 C 1.48560 * 111.00103 * 290.41898 * 13 3 2 15 15 C 1.54379 * 104.59568 * 200.95839 * 14 13 3 16 16 C 1.54266 * 105.05876 * 23.85076 * 15 14 13 17 17 C 1.52997 * 110.32556 * 241.10254 * 16 15 14 18 18 C 1.53007 * 110.40594 * 118.93946 * 16 15 14 19 19 O 1.42904 * 109.47054 * 62.88785 * 18 16 15 20 20 C 1.48564 * 111.00139 * 174.99823 * 13 3 2 21 21 H 1.09006 * 109.46816 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47447 * 300.00125 * 1 2 3 23 23 H 1.08998 * 109.47208 * 60.00298 * 1 2 3 24 24 H 1.08999 * 109.47447 * 239.99874 * 2 1 3 25 25 H 1.08998 * 109.47208 * 119.99701 * 2 1 3 26 26 H 0.97000 * 120.00142 * 180.02562 * 8 7 5 27 27 H 1.09000 * 110.40951 * 319.73727 * 14 13 3 28 28 H 1.08999 * 110.40863 * 82.05964 * 14 13 3 29 29 H 1.09002 * 110.32524 * 264.95800 * 15 14 13 30 30 H 1.08997 * 110.32362 * 142.74502 * 15 14 13 31 31 H 1.09002 * 109.47153 * 175.63880 * 17 16 15 32 32 H 1.09001 * 109.46832 * 55.64071 * 17 16 15 33 33 H 1.09004 * 109.47261 * 295.64053 * 17 16 15 34 34 H 1.08994 * 109.47096 * 182.88497 * 18 16 15 35 35 H 1.08994 * 109.47350 * 302.88765 * 18 16 15 36 36 H 0.96695 * 113.99733 * 180.02562 * 19 18 16 37 37 H 1.09003 * 110.40566 * 40.26599 * 20 13 3 38 38 H 1.09000 * 110.41193 * 277.82184 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8803 1.3813 10 1 6.4425 2.1132 2.0839 11 1 6.4391 -0.3107 2.1546 12 1 6.6131 0.8399 0.0272 13 7 1.6513 2.0993 -1.2552 14 6 2.4048 1.5373 -2.4056 15 6 2.3184 2.6262 -3.4966 16 6 2.0684 3.9418 -2.7308 17 6 0.7329 4.5572 -3.1536 18 6 3.2102 4.9294 -2.9799 19 8 3.2546 5.2658 -4.3681 20 6 2.0248 3.5372 -1.2417 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8292 -0.0611 2.9499 27 1 3.4437 1.3584 -2.1286 28 1 1.9396 0.6137 -2.7500 29 1 1.4897 2.4189 -4.1736 30 1 3.2556 2.6826 -4.0502 31 1 0.5337 5.4428 -2.5500 32 1 -0.0653 3.8297 -3.0059 33 1 0.7789 4.8375 -4.2059 34 1 3.0442 5.8323 -2.3925 35 1 4.1555 4.4734 -2.6861 36 1 3.9566 5.8893 -4.5994 37 1 3.0043 3.6711 -0.7825 38 1 1.2722 4.1204 -0.7111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381619420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:58 Heat of formation + Delta-G solvation = -77.644529 kcal Electronic energy + Delta-G solvation = -17072.317432 eV Core-core repulsion = 14527.381306 eV Total energy + Delta-G solvation = -2544.936126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57179 -37.84639 -35.98808 -33.81713 -32.35721 -30.41357 -28.34939 -27.50807 -25.78171 -24.41377 -22.83775 -20.91727 -19.71691 -18.43317 -18.06181 -17.13450 -16.32727 -16.06064 -15.44114 -14.97840 -14.73275 -14.50931 -14.31797 -13.96861 -13.58298 -13.32245 -13.13739 -12.89427 -12.78539 -12.43397 -12.36415 -12.18732 -11.81694 -11.74552 -11.58239 -11.54853 -11.32829 -11.13580 -10.96161 -10.79124 -10.42667 -9.00131 -8.03881 -6.24814 1.36053 1.38509 1.46734 2.39455 3.14789 3.25347 3.62713 3.86352 3.97540 4.16321 4.47258 4.52084 4.56389 4.60200 4.70271 4.74552 4.77125 4.87601 4.91352 4.98882 5.09179 5.16503 5.22589 5.29503 5.33978 5.40796 5.42806 5.47140 5.57138 5.63906 5.78217 6.05304 6.17266 6.37573 6.51318 6.95577 6.96416 7.44871 8.92461 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.009784 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.500693 B = 2861.097799 C = 3645.139811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.209 3.791 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.505 5.505 14 C 0.033 3.967 15 C -0.098 4.098 16 C -0.063 4.063 17 C -0.117 4.117 18 C 0.095 3.905 19 O -0.579 6.579 20 C 0.048 3.952 21 H 0.045 0.955 22 H 0.033 0.967 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.261 0.739 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.394 0.606 37 H 0.033 0.967 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 7.338 -9.612 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.101 3.899 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.229 5.229 14 C -0.095 4.095 15 C -0.137 4.137 16 C -0.063 4.063 17 C -0.174 4.174 18 C 0.017 3.983 19 O -0.387 6.387 20 C -0.081 4.081 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.243 0.757 37 H 0.051 0.949 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.237 6.748 -9.497 11.863 hybrid contribution 2.469 0.167 0.871 2.624 sum 0.232 6.914 -8.626 11.057 Atomic orbital electron populations 1.21571 0.96365 0.99790 1.00625 1.21380 0.94458 0.98200 1.00153 1.19148 0.92098 0.91664 0.86968 0.97964 1.21950 0.93897 1.37659 1.05200 0.92636 1.25621 1.01747 0.94993 0.95594 1.70010 1.36263 1.38973 1.09800 0.85755 0.81494 0.77543 0.78056 1.20291 1.21000 1.19611 1.65636 1.51269 1.01948 1.04008 1.23029 0.97215 0.97720 0.91528 1.22279 1.01596 0.93127 0.96649 1.21294 0.96224 0.94822 0.93994 1.21629 0.94727 0.99873 1.01162 1.22084 0.96676 0.97154 0.82435 1.86416 1.59021 1.68453 1.24773 1.22965 0.99043 0.90997 0.95064 0.93574 0.94827 0.92541 0.95380 0.91954 0.92979 0.94454 0.91906 0.91006 0.91652 0.92499 0.92943 0.91945 0.92556 0.94578 0.75687 0.94896 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.80 71.98 0.71 -4.47 16 2 C -0.10 -5.02 5.24 30.59 0.16 -4.86 16 3 C 0.21 10.50 1.76 44.17 0.08 10.57 16 4 H 0.00 0.14 8.13 -2.39 -0.02 0.12 16 5 C -0.55 -29.33 6.56 25.60 0.17 -29.16 16 6 H 0.06 2.96 5.65 -2.91 -0.02 2.95 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.98 11.29 21.45 0.24 -51.74 16 9 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.51 -21.51 4.82 -860.71 -4.15 -25.65 16 14 C 0.03 1.32 5.48 86.45 0.47 1.80 16 15 C -0.10 -3.22 6.10 31.49 0.19 -3.03 16 16 C -0.06 -1.95 0.83 -51.28 -0.04 -1.99 16 17 C -0.12 -3.20 8.10 71.98 0.58 -2.62 16 18 C 0.09 2.52 5.65 71.98 0.41 2.93 16 19 O -0.58 -13.53 12.60 -148.98 -1.88 -15.40 16 20 C 0.05 1.83 5.40 86.45 0.47 2.30 16 21 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 24 H 0.03 1.33 7.03 -2.39 -0.02 1.32 16 25 H 0.06 3.40 5.95 -2.39 -0.01 3.39 16 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.04 1.67 5.53 -2.39 -0.01 1.66 16 28 H 0.06 2.45 7.63 -2.39 -0.02 2.44 16 29 H 0.07 2.19 7.71 -2.39 -0.02 2.18 16 30 H 0.06 2.06 7.57 -2.39 -0.02 2.05 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.62 7.66 -2.38 -0.02 1.60 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.39 5.37 9.12 -74.06 -0.68 4.69 16 37 H 0.03 1.40 6.35 -2.39 -0.02 1.38 16 38 H 0.07 2.54 7.86 -2.39 -0.02 2.52 16 Total: -1.00 -59.87 290.89 0.24 -59.63 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.35 Total: 14.93 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 3.64 Total: -26.97 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -3.90 Total: -77.40 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.88 Total: -15.40 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -59.87 0.24 -59.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381619420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.010 kcal (2) G-P(sol) polarization free energy of solvation -59.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds