Wall clock time and date at job start Sun Mar 29 2020 21:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46901 * 109.46769 * 294.99558 * 3 2 1 14 14 C 1.48531 * 111.00265 * 292.39764 * 13 3 2 15 15 C 1.54933 * 103.22853 * 200.28151 * 14 13 3 16 16 C 1.54596 * 102.92163 * 37.41226 * 15 14 13 17 17 C 1.53005 * 110.38995 * 97.00394 * 16 15 14 18 18 C 1.53006 * 110.30992 * 219.12534 * 16 15 14 19 19 O 1.42900 * 109.47362 * 295.71927 * 18 16 15 20 20 C 1.47903 * 111.00021 * 175.00111 * 13 3 2 21 21 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 23 23 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 27 27 H 1.09001 * 110.66675 * 318.71291 * 14 13 3 28 28 H 1.08997 * 110.66546 * 81.84865 * 14 13 3 29 29 H 1.09002 * 110.72333 * 279.05818 * 15 14 13 30 30 H 1.08997 * 110.87933 * 155.84371 * 15 14 13 31 31 H 1.08999 * 109.47309 * 304.23344 * 17 16 15 32 32 H 1.09000 * 109.47284 * 64.23903 * 17 16 15 33 33 H 1.09003 * 109.47163 * 184.23234 * 17 16 15 34 34 H 1.08996 * 109.46625 * 55.71916 * 18 16 15 35 35 H 1.09006 * 109.46871 * 175.71728 * 18 16 15 36 36 H 0.96697 * 114.00090 * 179.97438 * 19 18 16 37 37 H 1.09004 * 109.91967 * 265.20315 * 20 13 3 38 38 H 1.09010 * 109.91403 * 26.48958 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6514 2.0992 -1.2553 14 6 2.3699 1.5050 -2.4115 15 6 2.2641 2.6046 -3.4978 16 6 2.4098 3.9105 -2.6832 17 6 3.8552 4.4102 -2.7313 18 6 1.4602 4.9819 -3.2230 19 8 1.8347 5.3206 -4.5598 20 6 2.0232 3.5306 -1.2419 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.8293 -0.0608 2.9500 27 1 3.4127 1.3129 -2.1590 28 1 1.8779 0.5900 -2.7412 29 1 1.2939 2.5654 -3.9932 30 1 3.0708 2.5114 -4.2248 31 1 4.5233 3.6243 -2.3791 32 1 4.1142 4.6750 -3.7564 33 1 3.9577 5.2875 -2.0925 34 1 0.4398 4.5990 -3.2175 35 1 1.5186 5.8697 -2.5932 36 1 1.2741 5.9957 -4.9662 37 1 1.1749 4.1317 -0.9143 38 1 2.8720 3.6876 -0.5761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381619422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:00 Heat of formation + Delta-G solvation = -58.659606 kcal Electronic energy + Delta-G solvation = -17103.550486 eV Core-core repulsion = 14559.437608 eV Total energy + Delta-G solvation = -2544.112878 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.09475 -36.52180 -34.37384 -31.91064 -30.65317 -28.85763 -26.77918 -26.00941 -24.15890 -22.68789 -21.15409 -19.03379 -18.37141 -17.11788 -16.36764 -15.17922 -14.90736 -14.56121 -14.00887 -13.64723 -13.03317 -12.66540 -12.59123 -12.25275 -11.95038 -11.87816 -11.57379 -11.39237 -11.07688 -10.86675 -10.57427 -10.44386 -10.27282 -10.22052 -9.94224 -9.86974 -9.71782 -9.56399 -9.40575 -9.03758 -8.35166 -7.13914 -5.98487 -4.10969 3.25417 3.34375 3.37471 4.39620 4.41688 5.08548 5.20293 5.22530 5.26904 5.50878 5.70749 5.80374 5.93885 6.05354 6.11191 6.25687 6.37499 6.42367 6.50108 6.52753 6.61703 6.68818 6.73086 6.79084 6.88512 7.00040 7.11508 7.20386 7.36559 7.62220 7.75820 7.76963 7.99880 8.17193 8.27865 8.46767 8.99981 9.55788 11.01016 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026259 B = 0.009578 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.032642 B = 2922.588773 C = 3643.510473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.204 3.796 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.515 5.515 14 C 0.037 3.963 15 C -0.106 4.106 16 C -0.069 4.069 17 C -0.131 4.131 18 C 0.092 3.908 19 O -0.572 6.572 20 C 0.050 3.950 21 H 0.024 0.976 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.031 0.969 25 H 0.091 0.909 26 H 0.260 0.740 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.371 0.629 37 H 0.057 0.943 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 6.397 -8.520 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.097 3.903 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.238 5.238 14 C -0.091 4.091 15 C -0.144 4.144 16 C -0.070 4.070 17 C -0.188 4.188 18 C 0.015 3.985 19 O -0.376 6.376 20 C -0.078 4.078 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.216 0.784 37 H 0.075 0.925 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.337 5.776 -8.241 10.602 hybrid contribution 1.479 0.469 0.313 1.582 sum -1.858 6.244 -7.928 10.262 Atomic orbital electron populations 1.21712 0.98931 0.98372 1.00527 1.21537 0.92188 0.99105 1.01861 1.19401 0.93142 0.91376 0.86401 0.94547 1.21781 0.92815 1.37949 1.05387 0.92166 1.24918 0.97731 0.95109 0.95719 1.69895 1.34643 1.38374 1.09420 0.86653 0.86335 0.77740 0.77990 1.19877 1.21060 1.21012 1.65107 1.52833 1.00851 1.05054 1.23145 0.99030 0.96304 0.90616 1.22496 1.00877 0.93930 0.97090 1.21420 0.95015 0.94506 0.96063 1.21768 0.95263 1.00590 1.01185 1.22303 0.97235 0.96691 0.82320 1.86503 1.59423 1.62429 1.29243 1.22740 0.99646 0.91914 0.93545 0.95646 0.94291 0.93384 0.95056 0.89060 0.92986 0.91984 0.91861 0.92009 0.92188 0.92405 0.92567 0.93320 0.93508 0.94211 0.78394 0.92466 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.59 5.22 -26.73 -0.14 -2.73 16 3 C 0.20 5.01 1.72 -68.86 -0.12 4.89 16 4 H 0.04 1.00 8.13 -51.93 -0.42 0.58 16 5 C -0.54 -14.24 6.43 -34.44 -0.22 -14.46 16 6 H 0.06 1.59 5.99 -52.49 -0.31 1.28 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.80 11.30 55.43 0.63 -24.18 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -10.95 4.72 -223.88 -1.06 -12.01 16 14 C 0.04 0.74 5.46 -1.90 -0.01 0.73 16 15 C -0.11 -1.82 5.96 -24.87 -0.15 -1.97 16 16 C -0.07 -1.16 0.77 -153.15 -0.12 -1.28 16 17 C -0.13 -2.14 8.07 37.16 0.30 -1.84 16 18 C 0.09 1.28 5.61 37.16 0.21 1.49 16 19 O -0.57 -7.44 12.71 -35.23 -0.45 -7.88 16 20 C 0.05 0.97 5.71 -2.76 -0.02 0.96 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 24 H 0.03 0.74 6.95 -51.93 -0.36 0.38 16 25 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.06 1.38 5.70 -51.93 -0.30 1.08 16 28 H 0.06 1.24 7.60 -51.93 -0.39 0.85 16 29 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 30 H 0.06 0.99 7.86 -51.93 -0.41 0.59 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.88 7.62 -51.93 -0.40 0.48 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.37 2.98 9.12 45.56 0.42 3.40 16 37 H 0.06 1.04 7.68 -51.93 -0.40 0.64 16 38 H 0.06 1.37 6.20 -51.92 -0.32 1.05 16 LS Contribution 291.15 15.07 4.39 4.39 Total: -1.00 -28.30 291.15 -7.19 -35.49 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.69 Total: 3.14 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 0.01 Total: -14.97 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.43 Total: -36.19 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.45 Total: -7.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.30 -7.19 -35.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381619422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.170 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds