Wall clock time and date at job start Sun Mar 29 2020 21:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46901 * 109.46769 * 294.99558 * 3 2 1 14 14 C 1.48531 * 111.00265 * 292.39764 * 13 3 2 15 15 C 1.54933 * 103.22853 * 200.28151 * 14 13 3 16 16 C 1.54596 * 102.92163 * 37.41226 * 15 14 13 17 17 C 1.53005 * 110.38995 * 97.00394 * 16 15 14 18 18 C 1.53006 * 110.30992 * 219.12534 * 16 15 14 19 19 O 1.42900 * 109.47362 * 295.71927 * 18 16 15 20 20 C 1.47903 * 111.00021 * 175.00111 * 13 3 2 21 21 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 23 23 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 27 27 H 1.09001 * 110.66675 * 318.71291 * 14 13 3 28 28 H 1.08997 * 110.66546 * 81.84865 * 14 13 3 29 29 H 1.09002 * 110.72333 * 279.05818 * 15 14 13 30 30 H 1.08997 * 110.87933 * 155.84371 * 15 14 13 31 31 H 1.08999 * 109.47309 * 304.23344 * 17 16 15 32 32 H 1.09000 * 109.47284 * 64.23903 * 17 16 15 33 33 H 1.09003 * 109.47163 * 184.23234 * 17 16 15 34 34 H 1.08996 * 109.46625 * 55.71916 * 18 16 15 35 35 H 1.09006 * 109.46871 * 175.71728 * 18 16 15 36 36 H 0.96697 * 114.00090 * 179.97438 * 19 18 16 37 37 H 1.09004 * 109.91967 * 265.20315 * 20 13 3 38 38 H 1.09010 * 109.91403 * 26.48958 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6514 2.0992 -1.2553 14 6 2.3699 1.5050 -2.4115 15 6 2.2641 2.6046 -3.4978 16 6 2.4098 3.9105 -2.6832 17 6 3.8552 4.4102 -2.7313 18 6 1.4602 4.9819 -3.2230 19 8 1.8347 5.3206 -4.5598 20 6 2.0232 3.5306 -1.2419 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.8293 -0.0608 2.9500 27 1 3.4127 1.3129 -2.1590 28 1 1.8779 0.5900 -2.7412 29 1 1.2939 2.5654 -3.9932 30 1 3.0708 2.5114 -4.2248 31 1 4.5233 3.6243 -2.3791 32 1 4.1142 4.6750 -3.7564 33 1 3.9577 5.2875 -2.0925 34 1 0.4398 4.5990 -3.2175 35 1 1.5186 5.8697 -2.5932 36 1 1.2741 5.9957 -4.9662 37 1 1.1749 4.1317 -0.9143 38 1 2.8720 3.6876 -0.5761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381619422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:59 Heat of formation + Delta-G solvation = -78.493779 kcal Electronic energy + Delta-G solvation = -17104.410560 eV Core-core repulsion = 14559.437608 eV Total energy + Delta-G solvation = -2544.972952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60352 -37.81779 -35.96249 -33.83260 -32.29830 -30.42351 -28.51504 -27.41344 -25.78119 -24.38686 -22.84427 -20.87031 -19.79250 -18.43741 -18.02929 -17.04613 -16.36810 -15.96948 -15.60337 -15.14811 -14.88330 -14.28934 -14.02740 -13.91442 -13.41034 -13.34934 -13.21111 -13.03007 -12.85672 -12.66575 -12.41750 -12.08697 -11.89190 -11.77437 -11.57959 -11.43135 -11.26131 -11.23485 -10.95869 -10.73808 -10.42812 -8.96370 -8.03656 -6.24131 1.34289 1.37875 1.47029 2.39323 3.15017 3.36290 3.55452 3.84299 3.87654 4.23073 4.46002 4.52737 4.56842 4.64106 4.68245 4.74161 4.81244 4.87806 4.91409 4.96161 5.04557 5.11616 5.22768 5.27464 5.30959 5.38611 5.43688 5.48246 5.54428 5.64800 5.78960 6.05998 6.18949 6.39974 6.54799 6.97442 7.02150 7.45443 8.92488 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026259 B = 0.009578 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.032642 B = 2922.588773 C = 3643.510473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.211 3.789 4 H 0.002 0.998 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.513 5.513 14 C 0.038 3.962 15 C -0.095 4.095 16 C -0.068 4.068 17 C -0.125 4.125 18 C 0.101 3.899 19 O -0.583 6.583 20 C 0.050 3.950 21 H 0.045 0.955 22 H 0.032 0.968 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.394 0.606 37 H 0.069 0.931 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 7.335 -10.091 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.103 3.897 4 H 0.020 0.980 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.236 5.236 14 C -0.090 4.090 15 C -0.133 4.133 16 C -0.069 4.069 17 C -0.182 4.182 18 C 0.023 3.977 19 O -0.391 6.391 20 C -0.079 4.079 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.244 0.756 37 H 0.088 0.912 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.703 6.734 -9.835 12.482 hybrid contribution 1.573 0.206 0.770 1.764 sum -2.130 6.940 -9.065 11.613 Atomic orbital electron populations 1.21571 0.96287 0.99800 1.00656 1.21392 0.94526 0.98176 1.00186 1.19162 0.91991 0.91638 0.86881 0.98009 1.21995 0.93928 1.37298 1.05086 0.92766 1.25599 1.01572 0.95116 0.95645 1.70015 1.36083 1.39171 1.09847 0.85740 0.81767 0.77691 0.77867 1.19614 1.20774 1.20698 1.65048 1.52758 1.01859 1.03964 1.23116 0.97200 0.97596 0.91127 1.22429 1.01860 0.92794 0.96226 1.21378 0.95946 0.95487 0.94089 1.21705 0.94651 1.00019 1.01855 1.22077 0.96284 0.96159 0.83141 1.86430 1.60441 1.63632 1.28590 1.22752 0.99008 0.90926 0.95220 0.93576 0.94839 0.92445 0.95301 0.92008 0.93008 0.94627 0.91625 0.90746 0.91370 0.94803 0.91433 0.92579 0.92872 0.92850 0.75618 0.91243 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.80 71.98 0.71 -4.41 16 2 C -0.10 -5.05 5.22 30.60 0.16 -4.89 16 3 C 0.21 10.61 1.72 44.17 0.08 10.68 16 4 H 0.00 0.11 8.13 -2.39 -0.02 0.09 16 5 C -0.54 -29.35 6.43 25.60 0.16 -29.19 16 6 H 0.05 2.95 5.99 -2.91 -0.02 2.93 16 7 C 0.02 1.12 5.29 84.65 0.45 1.56 16 8 N -0.91 -52.29 11.30 21.45 0.24 -52.05 16 9 Si 0.94 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.51 -21.75 4.72 -862.24 -4.07 -25.82 16 14 C 0.04 1.49 5.46 86.65 0.47 1.96 16 15 C -0.10 -3.08 5.96 31.80 0.19 -2.89 16 16 C -0.07 -2.15 0.77 -51.30 -0.04 -2.19 16 17 C -0.12 -3.92 8.07 71.98 0.58 -3.34 16 18 C 0.10 2.48 5.61 71.98 0.40 2.89 16 19 O -0.58 -12.95 12.71 -148.98 -1.89 -14.84 16 20 C 0.05 1.90 5.71 86.44 0.49 2.39 16 21 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 24 H 0.03 1.37 6.95 -2.39 -0.02 1.35 16 25 H 0.06 3.37 5.95 -2.39 -0.01 3.36 16 26 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.04 1.60 5.70 -2.39 -0.01 1.58 16 28 H 0.07 2.53 7.60 -2.39 -0.02 2.51 16 29 H 0.07 2.24 7.84 -2.39 -0.02 2.23 16 30 H 0.07 2.11 7.86 -2.39 -0.02 2.09 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.96 7.62 -2.39 -0.02 1.94 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.26 8.11 -2.39 -0.02 1.24 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.39 4.74 9.12 -74.06 -0.68 4.06 16 37 H 0.07 2.46 7.68 -2.38 -0.02 2.44 16 38 H 0.03 1.51 6.20 -2.38 -0.01 1.50 16 Total: -1.00 -60.70 291.15 0.31 -60.39 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.35 Total: 13.87 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.66 Total: -27.41 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.83 Total: -77.87 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.89 Total: -14.84 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.70 0.31 -60.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381619422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.105 kcal (2) G-P(sol) polarization free energy of solvation -60.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds