Wall clock time and date at job start Sun Mar 29 2020 21:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 H 1.09008 * 109.47483 * 54.58519 * 3 2 1 5 5 C 1.53004 * 109.47032 * 174.58265 * 3 2 1 6 6 O 1.42898 * 109.46859 * 55.33176 * 5 3 2 7 7 N 1.46896 * 109.47311 * 294.58180 * 3 2 1 8 8 C 1.46899 * 111.00030 * 296.28240 * 7 3 2 9 9 C 1.46905 * 111.00550 * 172.32578 * 7 3 2 10 10 C 1.52995 * 109.47507 * 196.45628 * 9 7 3 11 11 C 1.50695 * 115.55169 * 271.03098 * 10 9 7 12 12 H 1.08001 * 120.00187 * 143.64534 * 11 10 9 13 13 C 1.37872 * 119.99963 * 323.64639 * 11 10 9 14 14 N 1.31520 * 119.99990 * 338.35787 * 13 11 10 15 15 Si 1.86798 * 120.00159 * 158.35652 * 13 11 10 16 16 H 1.48503 * 109.47140 * 60.00327 * 15 13 11 17 17 H 1.48505 * 109.47203 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47177 * 300.00050 * 15 13 11 19 19 C 1.53001 * 117.49558 * 125.31941 * 10 9 7 20 20 C 1.53002 * 60.00319 * 252.51308 * 19 10 9 21 21 H 1.09002 * 109.46708 * 295.44436 * 1 2 3 22 22 H 1.08997 * 109.47049 * 55.44367 * 1 2 3 23 23 H 1.08999 * 109.46989 * 175.44335 * 1 2 3 24 24 H 1.09001 * 109.47091 * 119.99638 * 2 1 3 25 25 H 1.08993 * 109.47274 * 239.99907 * 2 1 3 26 26 H 1.09001 * 109.47177 * 175.32665 * 5 3 2 27 27 H 1.08993 * 109.47323 * 295.33060 * 5 3 2 28 28 H 0.96699 * 113.99743 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.47236 * 47.56924 * 8 7 3 30 30 H 1.09003 * 109.47007 * 167.56521 * 8 7 3 31 31 H 1.08995 * 109.47310 * 287.56107 * 8 7 3 32 32 H 1.09003 * 109.46733 * 316.45828 * 9 7 3 33 33 H 1.09004 * 109.46841 * 76.45312 * 9 7 3 34 34 H 0.96998 * 119.99916 * 185.02598 * 14 13 11 35 35 H 1.08993 * 117.50343 * 0.02562 * 19 10 9 36 36 H 1.09005 * 117.49795 * 145.02592 * 19 10 9 37 37 H 1.09005 * 117.49758 * 252.51723 * 20 19 10 38 38 H 1.08994 * 117.51699 * 107.48199 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8376 5 6 3.5640 1.4446 0.1362 6 8 4.1359 0.6444 -0.9004 7 7 1.6601 2.0962 -1.2594 8 6 2.3079 1.4461 -2.4064 9 6 1.9717 3.5313 -1.2227 10 6 1.2125 4.2470 -2.3417 11 6 1.9272 4.3239 -3.6661 12 1 1.3686 4.2424 -4.5868 13 6 3.2944 4.4983 -3.7025 14 7 3.9195 5.0131 -2.6661 15 14 4.2590 4.0035 -5.2237 16 1 3.7677 4.7746 -6.3939 17 1 5.7004 4.2904 -5.0110 18 1 4.0758 2.5515 -5.4754 19 6 0.3231 5.4283 -1.9487 20 6 -0.3103 4.1002 -2.3682 21 1 -0.3633 0.4415 0.9280 22 1 -0.3633 0.5829 -0.8463 23 1 -0.3633 -1.0244 -0.0816 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.9348 2.4662 0.0529 27 1 3.8426 1.0349 1.1070 28 1 5.1016 0.6007 -0.8760 29 1 2.1871 0.3657 -2.3276 30 1 1.8479 1.7967 -3.3303 31 1 3.3694 1.6935 -2.4124 32 1 1.6722 3.9436 -0.2591 33 1 3.0434 3.6741 -1.3617 34 1 4.8691 5.2035 -2.7181 35 1 0.2792 5.6959 -0.8930 36 1 0.2550 6.2615 -2.6481 37 1 -0.7951 4.0598 -3.3437 38 1 -0.7711 3.4936 -1.5887 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382066522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:25 Heat of formation + Delta-G solvation = -17.987037 kcal Electronic energy + Delta-G solvation = -17376.985722 eV Core-core repulsion = 14834.636539 eV Total energy + Delta-G solvation = -2542.349183 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.61749 -36.35777 -34.69627 -32.19559 -31.89138 -28.16841 -26.26329 -25.56436 -23.45798 -22.42542 -20.93494 -19.09525 -18.66622 -17.15088 -16.09978 -15.27569 -14.69607 -14.58587 -14.04619 -13.67542 -13.49158 -12.84105 -12.49725 -12.14347 -11.90009 -11.70216 -11.46586 -11.04481 -10.92404 -10.81032 -10.68555 -10.46964 -10.32560 -10.30556 -10.10051 -9.92369 -9.39662 -9.08394 -8.87759 -8.51776 -8.01006 -7.04677 -6.04351 -3.96361 3.30031 3.35092 3.41310 4.40787 4.59944 4.94477 5.09172 5.26961 5.47611 5.65358 5.68679 5.79570 5.90495 6.04454 6.10188 6.25086 6.31590 6.39774 6.51661 6.66943 6.71443 6.75542 6.82606 6.91844 6.95937 7.09161 7.15573 7.29001 7.38253 7.54185 7.63428 7.95617 7.98423 8.25578 8.30241 8.57503 8.95704 9.56025 10.97991 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.011675 C = 0.009247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.096355 B = 2397.655005 C = 3027.254543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.080 0.920 5 C 0.044 3.956 6 O -0.556 6.556 7 N -0.524 5.524 8 C 0.045 3.955 9 C 0.083 3.917 10 C 0.064 3.936 11 C -0.485 4.485 12 H 0.058 0.942 13 C 0.077 3.923 14 N -0.872 5.872 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.272 1.272 19 C -0.208 4.208 20 C -0.192 4.192 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.363 0.637 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -7.444 5.791 9.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.026 4.026 4 H 0.098 0.902 5 C -0.036 4.036 6 O -0.360 6.360 7 N -0.247 5.247 8 C -0.103 4.103 9 C -0.043 4.043 10 C 0.063 3.937 11 C -0.522 4.522 12 H 0.076 0.924 13 C -0.126 4.126 14 N -0.509 5.509 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.198 1.198 19 C -0.246 4.246 20 C -0.229 4.229 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.209 0.791 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.461 -7.567 5.660 9.562 hybrid contribution 2.032 0.142 -0.397 2.075 sum 0.571 -7.425 5.264 9.119 Atomic orbital electron populations 1.21676 0.95796 1.00320 1.02298 1.21474 0.95989 0.95729 1.01454 1.21898 0.90084 0.95780 0.94796 0.90233 1.23003 0.96831 0.94525 0.89222 1.86745 1.24070 1.72624 1.52561 1.62152 1.57857 1.03804 1.00853 1.22368 0.97751 0.96493 0.93683 1.21850 1.02603 0.84577 0.95301 1.18797 0.86561 0.93695 0.94645 1.20467 0.91320 1.49712 0.90706 0.92392 1.24878 0.97653 0.94299 0.95763 1.69971 1.10250 1.40168 1.30531 0.86893 0.78840 0.79921 0.83889 1.20366 1.21483 1.19752 1.22986 1.10879 0.92531 0.98219 1.22657 0.99961 1.00240 1.00053 0.93839 0.90925 0.94151 0.93266 0.90989 0.93164 0.94920 0.79090 0.93803 0.91391 0.94202 0.95086 0.89581 0.93021 0.92259 0.90914 0.91490 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.86 37.16 0.37 -1.71 16 2 C -0.11 -1.66 5.03 -26.73 -0.13 -1.79 16 3 C 0.08 1.45 2.28 -67.71 -0.15 1.29 16 4 H 0.08 1.33 7.91 -51.92 -0.41 0.92 16 5 C 0.04 0.71 6.36 37.16 0.24 0.95 16 6 O -0.56 -9.03 9.30 -35.23 -0.33 -9.35 16 7 N -0.52 -10.68 3.90 -234.89 -0.92 -11.60 16 8 C 0.04 0.96 7.47 60.06 0.45 1.40 16 9 C 0.08 1.94 4.11 -3.82 -0.02 1.92 16 10 C 0.06 1.59 1.60 -155.66 -0.25 1.34 16 11 C -0.49 -13.10 7.38 -34.44 -0.25 -13.35 16 12 H 0.06 1.60 7.91 -52.49 -0.41 1.18 16 13 C 0.08 2.05 4.96 -17.82 -0.09 1.96 16 14 N -0.87 -23.85 11.24 55.43 0.62 -23.22 16 15 Si 0.88 20.81 29.59 -169.99 -5.03 15.78 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.21 -4.91 9.88 -26.73 -0.26 -5.17 16 20 C -0.19 -4.35 9.76 -26.73 -0.26 -4.61 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.19 5.65 -51.93 -0.29 0.90 16 26 H 0.05 0.92 6.79 -51.93 -0.35 0.57 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.36 4.48 9.12 45.56 0.42 4.89 16 29 H 0.04 0.86 5.58 -51.93 -0.29 0.57 16 30 H 0.07 1.61 6.73 -51.93 -0.35 1.26 16 31 H 0.04 0.91 5.94 -51.93 -0.31 0.60 16 32 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 33 H 0.09 2.21 4.29 -51.93 -0.22 1.99 16 34 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 36 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -27.79 292.52 -7.14 -34.93 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.53 Total: 6.82 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -0.37 Total: -17.76 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.29 Total: -34.82 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.33 Total: -9.35 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.79 -7.14 -34.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382066522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.942 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds