Wall clock time and date at job start Sun Mar 29 2020 21:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 H 1.09008 * 109.47483 * 54.58519 * 3 2 1 5 5 C 1.53004 * 109.47032 * 174.58265 * 3 2 1 6 6 O 1.42898 * 109.46859 * 55.33176 * 5 3 2 7 7 N 1.46896 * 109.47311 * 294.58180 * 3 2 1 8 8 C 1.46899 * 111.00030 * 296.28240 * 7 3 2 9 9 C 1.46905 * 111.00550 * 172.32578 * 7 3 2 10 10 C 1.52995 * 109.47507 * 196.45628 * 9 7 3 11 11 C 1.50695 * 115.55169 * 271.03098 * 10 9 7 12 12 H 1.08001 * 120.00187 * 143.64534 * 11 10 9 13 13 C 1.37872 * 119.99963 * 323.64639 * 11 10 9 14 14 N 1.31520 * 119.99990 * 338.35787 * 13 11 10 15 15 Si 1.86798 * 120.00159 * 158.35652 * 13 11 10 16 16 H 1.48503 * 109.47140 * 60.00327 * 15 13 11 17 17 H 1.48505 * 109.47203 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47177 * 300.00050 * 15 13 11 19 19 C 1.53001 * 117.49558 * 125.31941 * 10 9 7 20 20 C 1.53002 * 60.00319 * 252.51308 * 19 10 9 21 21 H 1.09002 * 109.46708 * 295.44436 * 1 2 3 22 22 H 1.08997 * 109.47049 * 55.44367 * 1 2 3 23 23 H 1.08999 * 109.46989 * 175.44335 * 1 2 3 24 24 H 1.09001 * 109.47091 * 119.99638 * 2 1 3 25 25 H 1.08993 * 109.47274 * 239.99907 * 2 1 3 26 26 H 1.09001 * 109.47177 * 175.32665 * 5 3 2 27 27 H 1.08993 * 109.47323 * 295.33060 * 5 3 2 28 28 H 0.96699 * 113.99743 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.47236 * 47.56924 * 8 7 3 30 30 H 1.09003 * 109.47007 * 167.56521 * 8 7 3 31 31 H 1.08995 * 109.47310 * 287.56107 * 8 7 3 32 32 H 1.09003 * 109.46733 * 316.45828 * 9 7 3 33 33 H 1.09004 * 109.46841 * 76.45312 * 9 7 3 34 34 H 0.96998 * 119.99916 * 185.02598 * 14 13 11 35 35 H 1.08993 * 117.50343 * 0.02562 * 19 10 9 36 36 H 1.09005 * 117.49795 * 145.02592 * 19 10 9 37 37 H 1.09005 * 117.49758 * 252.51723 * 20 19 10 38 38 H 1.08994 * 117.51699 * 107.48199 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8376 5 6 3.5640 1.4446 0.1362 6 8 4.1359 0.6444 -0.9004 7 7 1.6601 2.0962 -1.2594 8 6 2.3079 1.4461 -2.4064 9 6 1.9717 3.5313 -1.2227 10 6 1.2125 4.2470 -2.3417 11 6 1.9272 4.3239 -3.6661 12 1 1.3686 4.2424 -4.5868 13 6 3.2944 4.4983 -3.7025 14 7 3.9195 5.0131 -2.6661 15 14 4.2590 4.0035 -5.2237 16 1 3.7677 4.7746 -6.3939 17 1 5.7004 4.2904 -5.0110 18 1 4.0758 2.5515 -5.4754 19 6 0.3231 5.4283 -1.9487 20 6 -0.3103 4.1002 -2.3682 21 1 -0.3633 0.4415 0.9280 22 1 -0.3633 0.5829 -0.8463 23 1 -0.3633 -1.0244 -0.0816 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.9348 2.4662 0.0529 27 1 3.8426 1.0349 1.1070 28 1 5.1016 0.6007 -0.8760 29 1 2.1871 0.3657 -2.3276 30 1 1.8479 1.7967 -3.3303 31 1 3.3694 1.6935 -2.4124 32 1 1.6722 3.9436 -0.2591 33 1 3.0434 3.6741 -1.3617 34 1 4.8691 5.2035 -2.7181 35 1 0.2792 5.6959 -0.8930 36 1 0.2550 6.2615 -2.6481 37 1 -0.7951 4.0598 -3.3437 38 1 -0.7711 3.4936 -1.5887 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382066522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:24 Heat of formation + Delta-G solvation = -35.875961 kcal Electronic energy + Delta-G solvation = -17377.761444 eV Core-core repulsion = 14834.636539 eV Total energy + Delta-G solvation = -2543.124905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13433 -38.06531 -36.09878 -34.19261 -33.35243 -29.52417 -28.03361 -27.56911 -24.94860 -23.82561 -22.80251 -20.78681 -20.32322 -18.46742 -18.02697 -16.79208 -16.58577 -16.16589 -15.47668 -15.32679 -15.14294 -14.39384 -14.10245 -13.59151 -13.45183 -13.25667 -13.13764 -12.82321 -12.81348 -12.41452 -12.30527 -12.13511 -11.98878 -11.89835 -11.72712 -11.34799 -10.96082 -10.88454 -10.69757 -10.44275 -9.93389 -8.72540 -8.07756 -6.05454 1.38460 1.42660 1.49317 2.42691 3.00408 3.22880 3.59034 3.85814 4.01881 4.16733 4.38799 4.43078 4.49633 4.62690 4.69173 4.74674 4.83713 4.94224 5.01255 5.04614 5.08637 5.12103 5.24013 5.25718 5.29264 5.42658 5.50311 5.58909 5.63738 5.67073 5.69397 6.02873 6.49278 6.56379 6.66321 6.88060 6.91368 7.48312 8.92516 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.011675 C = 0.009247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.096355 B = 2397.655005 C = 3027.254543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.077 3.923 4 H 0.087 0.913 5 C 0.050 3.950 6 O -0.570 6.570 7 N -0.522 5.522 8 C 0.062 3.938 9 C 0.097 3.903 10 C 0.037 3.963 11 C -0.502 4.502 12 H 0.043 0.957 13 C 0.045 3.955 14 N -0.891 5.891 15 Si 0.927 3.073 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.209 4.209 20 C -0.171 4.171 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.381 0.619 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -8.760 6.728 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.032 4.032 4 H 0.105 0.895 5 C -0.030 4.030 6 O -0.377 6.377 7 N -0.245 5.245 8 C -0.086 4.086 9 C -0.030 4.030 10 C 0.036 3.964 11 C -0.539 4.539 12 H 0.061 0.939 13 C -0.156 4.156 14 N -0.528 5.528 15 Si 0.753 3.247 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.247 4.247 20 C -0.209 4.209 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.537 -8.888 6.601 11.177 hybrid contribution 2.046 0.544 -0.661 2.217 sum 0.508 -8.344 5.940 10.255 Atomic orbital electron populations 1.21628 0.95167 1.01133 1.01766 1.21414 0.96451 0.94047 1.01910 1.22078 0.91117 0.96882 0.93171 0.89496 1.22866 0.96015 0.93396 0.90692 1.86673 1.25790 1.72300 1.52942 1.62088 1.57850 1.02471 1.02138 1.22124 0.96247 0.97245 0.92981 1.21558 1.00722 0.86239 0.94491 1.18962 0.87796 0.95016 0.94613 1.20594 0.91944 1.50229 0.91139 0.93915 1.25356 0.98165 0.94097 0.98002 1.70055 1.10324 1.40655 1.31796 0.86111 0.77861 0.79500 0.81246 1.20280 1.20949 1.19588 1.22970 1.10712 0.92359 0.98693 1.22600 0.98497 0.99466 1.00312 0.92774 0.93339 0.92384 0.90847 0.92347 0.95840 0.91727 0.77107 0.92194 0.94293 0.95967 0.95026 0.92025 0.93018 0.91007 0.91967 0.91642 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.86 71.98 0.71 -2.95 16 2 C -0.10 -2.78 5.03 30.59 0.15 -2.63 16 3 C 0.08 2.48 2.28 44.92 0.10 2.58 16 4 H 0.09 2.70 7.91 -2.38 -0.02 2.68 16 5 C 0.05 1.53 6.36 71.98 0.46 1.98 16 6 O -0.57 -17.60 9.30 -148.98 -1.39 -18.99 16 7 N -0.52 -20.92 3.90 -897.04 -3.50 -24.42 16 8 C 0.06 2.64 7.47 127.69 0.95 3.59 16 9 C 0.10 4.51 4.11 86.30 0.35 4.87 16 10 C 0.04 1.85 1.60 -52.93 -0.08 1.76 16 11 C -0.50 -27.48 7.38 25.60 0.19 -27.29 16 12 H 0.04 2.40 7.91 -2.91 -0.02 2.38 16 13 C 0.05 2.42 4.96 84.65 0.42 2.84 16 14 N -0.89 -49.14 11.24 21.45 0.24 -48.90 16 15 Si 0.93 42.97 29.59 68.60 2.03 45.00 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 C -0.21 -9.80 9.88 30.60 0.30 -9.50 16 20 C -0.17 -7.65 9.76 30.60 0.30 -7.36 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.50 7.65 -2.39 -0.02 1.49 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.79 5.65 -2.39 -0.01 1.77 16 26 H 0.02 0.84 6.79 -2.39 -0.02 0.83 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.38 8.76 9.12 -74.06 -0.68 8.08 16 29 H 0.06 2.31 5.58 -2.39 -0.01 2.30 16 30 H 0.04 1.85 6.73 -2.39 -0.02 1.84 16 31 H 0.02 1.01 5.94 -2.39 -0.01 1.00 16 32 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 33 H 0.06 3.20 4.29 -2.38 -0.01 3.19 16 34 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 35 H 0.07 3.14 8.04 -2.39 -0.02 3.12 16 36 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.06 2.92 8.14 -2.38 -0.02 2.90 16 38 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -58.55 292.52 1.61 -56.94 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.36 Total: 22.45 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.86 Total: -32.08 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -3.25 Total: -73.32 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.39 Total: -18.99 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -58.55 1.61 -56.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382066522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.065 kcal (2) G-P(sol) polarization free energy of solvation -58.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds