Wall clock time and date at job start Sun Mar 29 2020 21:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 H 1.08996 * 109.47326 * 303.96208 * 3 2 1 5 5 C 1.52998 * 109.47340 * 183.95421 * 3 2 1 6 6 O 1.42906 * 109.47296 * 307.52112 * 5 3 2 7 7 N 1.46909 * 109.47034 * 63.95745 * 3 2 1 8 8 C 1.46899 * 111.00064 * 63.79375 * 7 3 2 9 9 C 1.46900 * 110.99753 * 187.74597 * 7 3 2 10 10 C 1.52998 * 109.47143 * 172.68715 * 9 7 3 11 11 C 1.50695 * 115.56442 * 281.52748 * 10 9 7 12 12 H 1.08006 * 120.00387 * 140.24335 * 11 10 9 13 13 C 1.37877 * 120.00207 * 320.25056 * 11 10 9 14 14 N 1.31510 * 120.00561 * 172.84354 * 13 11 10 15 15 Si 1.86804 * 119.99722 * 352.84095 * 13 11 10 16 16 H 1.48499 * 109.47050 * 95.77434 * 15 13 11 17 17 H 1.48498 * 109.47383 * 215.77671 * 15 13 11 18 18 H 1.48505 * 109.47180 * 335.77746 * 15 13 11 19 19 C 1.53005 * 117.50010 * 135.83638 * 10 9 7 20 20 C 1.53007 * 117.49534 * 67.21398 * 10 9 7 21 21 H 1.09000 * 109.46819 * 64.91648 * 1 2 3 22 22 H 1.08998 * 109.46917 * 184.91256 * 1 2 3 23 23 H 1.08997 * 109.47233 * 304.91108 * 1 2 3 24 24 H 1.08997 * 109.47141 * 239.99815 * 2 1 3 25 25 H 1.09005 * 109.46961 * 119.99597 * 2 1 3 26 26 H 1.09004 * 109.46707 * 67.51644 * 5 3 2 27 27 H 1.08997 * 109.47702 * 187.51569 * 5 3 2 28 28 H 0.96691 * 114.00225 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.46886 * 199.48580 * 8 7 3 30 30 H 1.09000 * 109.47139 * 319.47913 * 8 7 3 31 31 H 1.09003 * 109.47246 * 79.48046 * 8 7 3 32 32 H 1.08999 * 109.47122 * 52.69039 * 9 7 3 33 33 H 1.09007 * 109.47143 * 292.69022 * 9 7 3 34 34 H 0.96998 * 120.00290 * 179.97438 * 14 13 11 35 35 H 1.09000 * 117.49342 * 0.02562 * 19 10 9 36 36 H 1.08993 * 117.49994 * 145.02235 * 19 10 9 37 37 H 1.09005 * 117.49478 * 214.97721 * 20 10 9 38 38 H 1.08997 * 117.49865 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9764 -0.8523 5 6 3.5667 1.4437 -0.0995 6 8 4.1110 0.5992 0.9167 7 7 1.6298 2.1069 1.2445 8 6 2.2513 1.4677 2.4120 9 6 1.9408 3.5419 1.2022 10 6 1.3394 4.2304 2.4291 11 6 -0.1399 4.5087 2.3587 12 1 -0.7579 4.3694 3.2335 13 6 -0.7047 4.9409 1.1775 14 7 -2.0113 5.0488 1.0740 15 14 0.3861 5.3733 -0.2760 16 1 0.4877 4.2027 -1.1842 17 1 -0.2019 6.5213 -1.0120 18 1 1.7398 5.7396 0.2126 19 6 2.2142 5.2433 3.1706 20 6 1.9275 3.8770 3.7967 21 1 -0.3633 0.4357 -0.9308 22 1 -0.3633 -1.0239 0.0880 23 1 -0.3633 0.5881 0.8427 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8672 1.0729 -1.0795 27 1 3.9388 2.4594 0.0344 28 1 5.0768 0.5518 0.9132 29 1 1.6906 1.7276 3.3098 30 1 2.2448 0.3857 2.2802 31 1 3.2795 1.8153 2.5122 32 1 1.5188 3.9787 0.2971 33 1 3.0222 3.6795 1.2019 34 1 -2.4086 5.3532 0.2432 35 1 3.2181 5.4194 2.7840 36 1 1.7198 6.1109 3.6074 37 1 1.2443 3.8458 4.6454 38 1 2.7425 3.1537 3.8223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382066526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:26 Heat of formation + Delta-G solvation = 0.116408 kcal Electronic energy + Delta-G solvation = -17427.532804 eV Core-core repulsion = 14885.968645 eV Total energy + Delta-G solvation = -2541.564159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11884 -36.81154 -34.95974 -32.16035 -31.97950 -28.40091 -27.67420 -25.22222 -23.86587 -22.56081 -21.30083 -19.35278 -18.96850 -17.45657 -16.24886 -15.75150 -15.51209 -14.55562 -14.27084 -13.73360 -13.53495 -13.03652 -12.75381 -12.65270 -12.32149 -11.96051 -11.70208 -11.63526 -11.23737 -10.96427 -10.78197 -10.55741 -10.46636 -10.19037 -10.07089 -9.79025 -9.49185 -9.32034 -9.03848 -8.55837 -8.28412 -7.43009 -6.02459 -3.94698 3.25740 3.38082 3.41458 4.28455 4.44930 4.55101 4.99834 5.13779 5.21809 5.43500 5.48228 5.58237 5.68173 5.80423 5.89017 5.94817 6.10216 6.13982 6.19734 6.30029 6.33773 6.38469 6.44804 6.52388 6.60965 6.73178 6.81492 6.83031 6.98964 7.10488 7.22483 7.64155 7.78143 7.86628 7.91807 8.62015 9.01478 9.62569 11.10651 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.012188 C = 0.010323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.879208 B = 2296.775601 C = 2711.824988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C 0.078 3.922 4 H 0.086 0.914 5 C 0.041 3.959 6 O -0.558 6.558 7 N -0.506 5.506 8 C 0.035 3.965 9 C 0.090 3.910 10 C 0.019 3.981 11 C -0.462 4.462 12 H 0.075 0.925 13 C 0.078 3.922 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.283 1.283 17 H -0.303 1.303 18 H -0.268 1.268 19 C -0.213 4.213 20 C -0.191 4.191 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.366 0.634 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -7.782 -2.818 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.031 4.031 4 H 0.104 0.896 5 C -0.038 4.038 6 O -0.363 6.363 7 N -0.228 5.228 8 C -0.112 4.112 9 C -0.037 4.037 10 C 0.018 3.982 11 C -0.499 4.499 12 H 0.093 0.907 13 C -0.123 4.123 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.211 1.211 17 H -0.232 1.232 18 H -0.194 1.194 19 C -0.251 4.251 20 C -0.229 4.229 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.212 0.788 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.920 -7.861 -2.747 12.952 hybrid contribution 2.100 0.562 -1.204 2.485 sum 12.020 -7.300 -3.951 14.607 Atomic orbital electron populations 1.21709 0.95102 1.00548 1.03183 1.21444 0.96616 0.94679 1.01484 1.22018 0.89653 0.96666 0.94782 0.89569 1.23028 0.97231 0.93306 0.90256 1.86693 1.24586 1.69813 1.55168 1.61977 1.57836 1.01997 1.01036 1.22647 0.96107 0.98674 0.93798 1.22111 0.95030 0.87523 0.99037 1.19253 0.94727 0.96112 0.88092 1.20245 0.88414 1.43142 0.98113 0.90695 1.24906 0.94540 0.94797 0.98101 1.69892 1.09684 1.46975 1.26825 0.86803 0.80930 0.76755 0.82879 1.21084 1.23178 1.19369 1.23207 0.99783 0.93648 1.08473 1.22985 1.03040 0.97839 0.99007 0.93601 0.93974 0.90227 0.92981 0.90953 0.93999 0.93859 0.78837 0.91148 0.91935 0.95583 0.92374 0.96838 0.92734 0.91920 0.89745 0.90096 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.85 37.16 0.37 -2.06 16 2 C -0.10 -1.61 5.01 -26.73 -0.13 -1.74 16 3 C 0.08 1.35 2.31 -67.71 -0.16 1.19 16 4 H 0.09 1.58 8.01 -51.93 -0.42 1.17 16 5 C 0.04 0.59 6.38 37.16 0.24 0.83 16 6 O -0.56 -7.28 9.45 -35.23 -0.33 -7.61 16 7 N -0.51 -10.21 4.08 -234.88 -0.96 -11.16 16 8 C 0.04 0.64 6.33 60.06 0.38 1.02 16 9 C 0.09 1.98 3.43 -3.82 -0.01 1.97 16 10 C 0.02 0.47 1.26 -155.66 -0.20 0.27 16 11 C -0.46 -13.14 9.58 -34.44 -0.33 -13.47 16 12 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 13 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 14 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 15 Si 0.89 22.43 24.34 -169.99 -4.14 18.29 16 16 H -0.28 -6.87 7.01 56.52 0.40 -6.47 16 17 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 18 H -0.27 -6.44 6.40 56.52 0.36 -6.08 16 19 C -0.21 -4.62 9.88 -26.72 -0.26 -4.89 16 20 C -0.19 -4.01 7.85 -26.72 -0.21 -4.22 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.08 1.54 7.59 -51.93 -0.39 1.15 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.13 5.59 -51.93 -0.29 0.84 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.65 6.46 -51.93 -0.34 0.31 16 28 H 0.37 3.14 9.12 45.56 0.42 3.56 16 29 H 0.07 1.36 5.85 -51.93 -0.30 1.06 16 30 H 0.06 1.06 5.13 -51.93 -0.27 0.80 16 31 H 0.03 0.46 5.92 -51.93 -0.31 0.15 16 32 H 0.06 1.38 1.86 -51.93 -0.10 1.28 16 33 H 0.01 0.28 6.42 -51.92 -0.33 -0.05 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.08 1.47 5.65 -51.93 -0.29 1.18 16 LS Contribution 280.59 15.07 4.23 4.23 Total: -1.00 -30.68 280.59 -6.02 -36.71 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.18 Total: 5.21 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.42 Total: -18.94 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.18 Total: -37.89 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.33 Total: -7.61 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.68 -6.02 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382066526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.823 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds