Wall clock time and date at job start Sun Mar 29 2020 21:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 H 1.08996 * 109.47326 * 303.96208 * 3 2 1 5 5 C 1.52998 * 109.47340 * 183.95421 * 3 2 1 6 6 O 1.42906 * 109.47296 * 307.52112 * 5 3 2 7 7 N 1.46909 * 109.47034 * 63.95745 * 3 2 1 8 8 C 1.46899 * 111.00064 * 63.79375 * 7 3 2 9 9 C 1.46900 * 110.99753 * 187.74597 * 7 3 2 10 10 C 1.52998 * 109.47143 * 172.68715 * 9 7 3 11 11 C 1.50695 * 115.56442 * 281.52748 * 10 9 7 12 12 H 1.08006 * 120.00387 * 140.24335 * 11 10 9 13 13 C 1.37877 * 120.00207 * 320.25056 * 11 10 9 14 14 N 1.31510 * 120.00561 * 172.84354 * 13 11 10 15 15 Si 1.86804 * 119.99722 * 352.84095 * 13 11 10 16 16 H 1.48499 * 109.47050 * 95.77434 * 15 13 11 17 17 H 1.48498 * 109.47383 * 215.77671 * 15 13 11 18 18 H 1.48505 * 109.47180 * 335.77746 * 15 13 11 19 19 C 1.53005 * 117.50010 * 135.83638 * 10 9 7 20 20 C 1.53007 * 117.49534 * 67.21398 * 10 9 7 21 21 H 1.09000 * 109.46819 * 64.91648 * 1 2 3 22 22 H 1.08998 * 109.46917 * 184.91256 * 1 2 3 23 23 H 1.08997 * 109.47233 * 304.91108 * 1 2 3 24 24 H 1.08997 * 109.47141 * 239.99815 * 2 1 3 25 25 H 1.09005 * 109.46961 * 119.99597 * 2 1 3 26 26 H 1.09004 * 109.46707 * 67.51644 * 5 3 2 27 27 H 1.08997 * 109.47702 * 187.51569 * 5 3 2 28 28 H 0.96691 * 114.00225 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.46886 * 199.48580 * 8 7 3 30 30 H 1.09000 * 109.47139 * 319.47913 * 8 7 3 31 31 H 1.09003 * 109.47246 * 79.48046 * 8 7 3 32 32 H 1.08999 * 109.47122 * 52.69039 * 9 7 3 33 33 H 1.09007 * 109.47143 * 292.69022 * 9 7 3 34 34 H 0.96998 * 120.00290 * 179.97438 * 14 13 11 35 35 H 1.09000 * 117.49342 * 0.02562 * 19 10 9 36 36 H 1.08993 * 117.49994 * 145.02235 * 19 10 9 37 37 H 1.09005 * 117.49478 * 214.97721 * 20 10 9 38 38 H 1.08997 * 117.49865 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9764 -0.8523 5 6 3.5667 1.4437 -0.0995 6 8 4.1110 0.5992 0.9167 7 7 1.6298 2.1069 1.2445 8 6 2.2513 1.4677 2.4120 9 6 1.9408 3.5419 1.2022 10 6 1.3394 4.2304 2.4291 11 6 -0.1399 4.5087 2.3587 12 1 -0.7579 4.3694 3.2335 13 6 -0.7047 4.9409 1.1775 14 7 -2.0113 5.0488 1.0740 15 14 0.3861 5.3733 -0.2760 16 1 0.4877 4.2027 -1.1842 17 1 -0.2019 6.5213 -1.0120 18 1 1.7398 5.7396 0.2126 19 6 2.2142 5.2433 3.1706 20 6 1.9275 3.8770 3.7967 21 1 -0.3633 0.4357 -0.9308 22 1 -0.3633 -1.0239 0.0880 23 1 -0.3633 0.5881 0.8427 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8672 1.0729 -1.0795 27 1 3.9388 2.4594 0.0344 28 1 5.0768 0.5518 0.9132 29 1 1.6906 1.7276 3.3098 30 1 2.2448 0.3857 2.2802 31 1 3.2795 1.8153 2.5122 32 1 1.5188 3.9787 0.2971 33 1 3.0222 3.6795 1.2019 34 1 -2.4086 5.3532 0.2432 35 1 3.2181 5.4194 2.7840 36 1 1.7198 6.1109 3.6074 37 1 1.2443 3.8458 4.6454 38 1 2.7425 3.1537 3.8223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382066526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:26 Heat of formation + Delta-G solvation = -23.094066 kcal Electronic energy + Delta-G solvation = -17428.539285 eV Core-core repulsion = 14885.968645 eV Total energy + Delta-G solvation = -2542.570641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54176 -38.31293 -36.17653 -34.28096 -33.44646 -29.67030 -29.33544 -27.22657 -25.20974 -23.93909 -23.00526 -21.00998 -20.58120 -18.55006 -18.19133 -17.43778 -16.91003 -16.04829 -15.49120 -15.44530 -15.14169 -14.79988 -14.31754 -14.23938 -13.61233 -13.43029 -13.29423 -13.09756 -12.90835 -12.66820 -12.30367 -12.11299 -12.00450 -11.71751 -11.57552 -11.29136 -11.20164 -11.05504 -10.77080 -10.37527 -10.30099 -8.86394 -8.25301 -6.21399 1.25774 1.35725 1.45111 2.35092 2.84175 3.12852 3.46378 3.60943 3.88563 4.02367 4.12057 4.18099 4.33950 4.36831 4.47230 4.50592 4.59803 4.63649 4.79531 4.82123 4.87206 4.90112 5.00819 5.06183 5.12029 5.19191 5.30727 5.36138 5.44610 5.52453 5.61713 5.76081 6.31244 6.39457 6.46355 6.77321 6.91806 7.39041 8.91936 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.012188 C = 0.010323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.879208 B = 2296.775601 C = 2711.824988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C 0.069 3.931 4 H 0.070 0.930 5 C 0.052 3.948 6 O -0.568 6.568 7 N -0.533 5.533 8 C 0.046 3.954 9 C 0.097 3.903 10 C -0.013 4.013 11 C -0.466 4.466 12 H 0.025 0.975 13 C 0.021 3.979 14 N -0.948 5.948 15 Si 0.957 3.043 16 H -0.273 1.273 17 H -0.309 1.309 18 H -0.245 1.245 19 C -0.201 4.201 20 C -0.171 4.171 21 H 0.039 0.961 22 H 0.062 0.938 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.388 0.612 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.634 -8.837 -3.840 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.040 4.040 4 H 0.088 0.912 5 C -0.027 4.027 6 O -0.376 6.376 7 N -0.256 5.256 8 C -0.101 4.101 9 C -0.030 4.030 10 C -0.014 4.014 11 C -0.503 4.503 12 H 0.044 0.956 13 C -0.175 4.175 14 N -0.588 5.588 15 Si 0.787 3.213 16 H -0.200 1.200 17 H -0.238 1.238 18 H -0.169 1.169 19 C -0.239 4.239 20 C -0.208 4.208 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.238 0.762 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.340 -8.933 -3.748 16.487 hybrid contribution 0.995 0.816 -0.764 1.497 sum 14.335 -8.117 -4.513 17.080 Atomic orbital electron populations 1.21659 0.96442 1.01029 1.01157 1.21399 0.95295 0.93948 1.02695 1.22090 0.92298 0.96880 0.92712 0.91174 1.22762 0.94678 0.93489 0.91816 1.86616 1.26777 1.69345 1.54873 1.61880 1.59397 1.01397 1.02932 1.22519 0.96086 0.99152 0.92341 1.21903 0.95791 0.88544 0.96766 1.19224 0.92433 0.98841 0.90881 1.20408 0.90931 1.42545 0.96427 0.95635 1.25717 0.95719 0.94845 1.01252 1.70049 1.11861 1.49131 1.27793 0.85760 0.79859 0.76440 0.79215 1.19988 1.23788 1.16944 1.23213 1.00320 0.93323 1.07077 1.22984 1.02903 0.98119 0.96793 0.94146 0.91906 0.94027 0.90368 0.90878 0.91416 0.94362 0.76237 0.93198 0.90873 0.94330 0.94086 0.94614 0.92786 0.88958 0.90764 0.91222 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.85 71.98 0.71 -3.94 16 2 C -0.10 -2.70 5.01 30.59 0.15 -2.54 16 3 C 0.07 2.19 2.31 44.91 0.10 2.30 16 4 H 0.07 2.44 8.01 -2.39 -0.02 2.42 16 5 C 0.05 1.26 6.38 71.98 0.46 1.72 16 6 O -0.57 -12.19 9.45 -148.98 -1.41 -13.60 16 7 N -0.53 -20.59 4.08 -897.03 -3.66 -24.25 16 8 C 0.05 1.56 6.33 127.69 0.81 2.37 16 9 C 0.10 4.06 3.43 86.30 0.30 4.35 16 10 C -0.01 -0.59 1.26 -52.93 -0.07 -0.66 16 11 C -0.47 -27.36 9.58 25.60 0.25 -27.12 16 12 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 13 C 0.02 1.28 5.45 84.66 0.46 1.74 16 14 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 15 Si 0.96 46.65 24.34 68.60 1.67 48.32 16 16 H -0.27 -12.68 7.01 99.48 0.70 -11.99 16 17 H -0.31 -15.11 7.11 99.48 0.71 -14.41 16 18 H -0.25 -10.90 6.40 99.48 0.64 -10.27 16 19 C -0.20 -8.27 9.88 30.60 0.30 -7.96 16 20 C -0.17 -6.88 7.85 30.60 0.24 -6.64 16 21 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.04 1.63 7.59 -2.39 -0.02 1.61 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 2.06 5.59 -2.38 -0.01 2.05 16 26 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.04 0.97 6.46 -2.39 -0.02 0.95 16 28 H 0.39 4.73 9.12 -74.06 -0.68 4.05 16 29 H 0.05 1.86 5.85 -2.39 -0.01 1.85 16 30 H 0.07 2.30 5.13 -2.39 -0.01 2.29 16 31 H 0.04 1.20 5.92 -2.39 -0.01 1.19 16 32 H 0.04 1.86 1.86 -2.39 0.00 1.86 16 33 H 0.04 1.34 6.42 -2.38 -0.02 1.32 16 34 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.09 3.27 8.10 -2.39 -0.02 3.25 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 38 H 0.11 3.68 5.65 -2.39 -0.01 3.66 16 Total: -1.00 -68.59 280.59 0.91 -67.68 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.30 Total: 18.71 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.71 Total: -36.39 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.36 Total: -84.72 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.41 Total: -13.60 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.67 Total: 48.32 kcal Total: -68.59 0.91 -67.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382066526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.586 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds