Wall clock time and date at job start Sun Mar 29 2020 21:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47078 * 2 1 4 4 H 1.09002 * 109.46953 * 55.42102 * 3 2 1 5 5 C 1.50693 * 109.46765 * 175.42097 * 3 2 1 6 6 H 1.08009 * 119.99888 * 120.00294 * 5 3 2 7 7 C 1.37876 * 120.00316 * 299.99916 * 5 3 2 8 8 N 1.31522 * 120.00364 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99882 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47612 * 89.99927 * 9 7 5 11 11 H 1.48505 * 109.47234 * 209.99724 * 9 7 5 12 12 H 1.48506 * 109.47380 * 329.99762 * 9 7 5 13 13 N 1.46894 * 109.47196 * 295.42108 * 3 2 1 14 14 C 1.46896 * 111.00085 * 153.78676 * 13 3 2 15 15 C 1.52996 * 109.47389 * 179.97438 * 14 13 3 16 16 H 1.09006 * 109.47653 * 59.99812 * 15 14 13 17 17 O 1.42904 * 109.47073 * 300.00184 * 15 14 13 18 18 C 1.42898 * 114.00200 * 96.84785 * 17 15 14 19 19 C 1.52995 * 109.47414 * 180.02562 * 15 14 13 20 20 C 1.53001 * 117.50077 * 252.81939 * 19 15 14 21 21 C 1.53003 * 117.50377 * 184.16169 * 19 15 14 22 22 H 1.09006 * 109.46565 * 63.83576 * 1 2 3 23 23 H 1.08998 * 109.47042 * 183.82755 * 1 2 3 24 24 H 1.08996 * 109.47229 * 303.83586 * 1 2 3 25 25 H 1.09005 * 109.47406 * 239.99977 * 2 1 3 26 26 H 1.08995 * 109.46872 * 120.00242 * 2 1 3 27 27 H 0.96997 * 120.00346 * 179.97438 * 8 7 5 28 28 H 1.00904 * 110.99931 * 29.83661 * 13 3 2 29 29 H 1.09003 * 109.47194 * 299.98034 * 14 13 3 30 30 H 1.08999 * 109.46898 * 59.98399 * 14 13 3 31 31 H 1.08998 * 109.47479 * 62.64376 * 18 17 15 32 32 H 1.08994 * 109.47246 * 182.65053 * 18 17 15 33 33 H 1.09006 * 109.46538 * 302.64525 * 18 17 15 34 34 H 1.09001 * 115.54896 * 38.49030 * 19 15 14 35 35 H 1.08995 * 117.49869 * 359.97438 * 20 19 15 36 36 H 1.09004 * 117.50268 * 145.01831 * 20 19 15 37 37 H 1.08999 * 117.49871 * 214.98165 * 21 19 15 38 38 H 1.09005 * 117.49604 * 359.97208 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5427 1.4440 0.1134 6 1 4.1427 1.8905 -0.6658 7 6 4.1517 0.8754 1.2119 8 7 5.4632 0.8771 1.3112 9 14 3.1142 0.1026 2.5594 10 1 2.8911 -1.3327 2.2508 11 1 3.8205 0.2252 3.8599 12 1 1.8060 0.8009 2.6388 13 7 1.6428 2.1024 -1.2508 14 6 1.5372 3.5562 -1.0687 15 6 1.1231 4.2071 -2.3899 16 1 0.1581 3.8093 -2.7043 17 8 2.1040 3.9222 -3.3893 18 6 1.7749 2.8124 -4.2271 19 6 1.0138 5.7213 -2.2003 20 6 -0.3896 6.3301 -2.1709 21 6 0.5141 6.5477 -3.3871 22 1 -0.3633 0.4532 -0.9224 23 1 -0.3633 -1.0254 0.0686 24 1 -0.3633 0.5722 0.8536 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.8916 0.4774 2.0842 28 1 0.7788 1.7185 -1.6036 29 1 0.7890 3.7735 -0.3063 30 1 2.5022 3.9540 -0.7546 31 1 0.8621 3.0329 -4.7805 32 1 2.5900 2.6319 -4.9279 33 1 1.6216 1.9257 -3.6119 34 1 1.7708 6.1704 -1.5575 35 1 -1.2349 5.6519 -2.2871 36 1 -0.5558 7.1801 -1.5090 37 1 0.9422 7.5406 -3.5247 38 1 0.2637 6.0126 -4.3031 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382160505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:42 Heat of formation + Delta-G solvation = -18.410583 kcal Electronic energy + Delta-G solvation = -16530.446037 eV Core-core repulsion = 13988.078488 eV Total energy + Delta-G solvation = -2542.367549 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71568 -36.47867 -35.86751 -32.45076 -31.71842 -28.68020 -26.99867 -25.45198 -22.87795 -22.34916 -21.83072 -20.50013 -19.63820 -16.81493 -16.37227 -15.64111 -15.45037 -14.76181 -14.43551 -14.07520 -13.77015 -13.29626 -12.87731 -12.68313 -12.40615 -11.92027 -11.78341 -11.59064 -11.50109 -11.14205 -10.99926 -10.60861 -10.60274 -10.35323 -10.20669 -10.06288 -9.93592 -9.49774 -9.16305 -8.92149 -8.48200 -7.32289 -5.99363 -3.95815 3.27051 3.37312 3.39705 3.66932 4.31154 4.43648 4.68922 4.95700 5.14125 5.18648 5.26695 5.33436 5.60382 5.62129 5.67041 5.71647 5.79203 5.84527 5.90113 5.95773 6.03090 6.10454 6.13613 6.27913 6.29260 6.43968 6.60017 6.61303 6.74181 6.82808 7.18380 7.68662 7.75490 7.97687 8.28207 8.79934 9.15636 9.63634 11.14216 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.007168 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.866415 B = 3905.442918 C = 4033.508000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.190 3.810 4 H 0.000 1.000 5 C -0.492 4.492 6 H 0.083 0.917 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.051 3.949 15 C 0.125 3.875 16 H 0.050 0.950 17 O -0.368 6.368 18 C 0.036 3.964 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.169 4.169 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.262 0.738 28 H 0.312 0.688 29 H 0.024 0.976 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.722 5.931 -7.019 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.082 3.918 4 H 0.017 0.983 5 C -0.531 4.531 6 H 0.101 0.899 7 C -0.136 4.136 8 N -0.541 5.541 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.300 5.300 14 C -0.079 4.079 15 C 0.067 3.933 16 H 0.068 0.932 17 O -0.287 6.287 18 C -0.061 4.061 19 C -0.168 4.168 20 C -0.215 4.215 21 C -0.206 4.206 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.745 6.008 -7.161 15.011 hybrid contribution -1.482 -0.677 1.406 2.152 sum -13.227 5.330 -5.755 15.378 Atomic orbital electron populations 1.21911 0.98274 1.00538 1.00643 1.22133 0.92863 1.00547 1.01817 1.19627 0.96935 0.89098 0.86176 0.98254 1.21058 0.88958 1.36834 1.06248 0.89942 1.24968 0.94733 0.96130 0.97729 1.69893 1.08325 1.45889 1.29952 0.86958 0.80558 0.79763 0.81487 1.20667 1.22527 1.19427 1.60536 1.35044 1.02079 1.32333 1.22363 1.01539 0.89799 0.94216 1.21623 0.90896 0.91436 0.89363 0.93221 1.87885 1.45286 1.49595 1.45902 1.22775 0.99151 0.90443 0.93748 1.22357 0.97702 0.94209 1.02546 1.22994 0.93473 1.03195 1.01849 1.22808 1.03686 1.01152 0.92957 0.93270 0.93588 0.93611 0.91333 0.92828 0.92802 0.87083 0.95823 0.89550 0.95973 0.90522 0.91937 0.87102 0.89033 0.88657 0.88882 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.67 37.16 0.36 -2.28 16 2 C -0.14 -2.90 5.02 -26.73 -0.13 -3.04 16 3 C 0.19 4.48 1.63 -68.87 -0.11 4.37 16 4 H 0.00 0.00 6.84 -51.93 -0.36 -0.36 16 5 C -0.49 -14.10 9.24 -34.44 -0.32 -14.41 16 6 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.88 22.13 24.41 -169.99 -4.15 17.98 16 10 H -0.28 -6.82 6.83 56.52 0.39 -6.43 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 13 N -0.67 -13.56 4.78 -107.96 -0.52 -14.07 16 14 C 0.05 0.95 5.17 -3.83 -0.02 0.93 16 15 C 0.13 1.96 2.60 -26.74 -0.07 1.89 16 16 H 0.05 0.71 7.53 -51.93 -0.39 0.31 16 17 O -0.37 -6.47 10.23 -35.23 -0.36 -6.83 16 18 C 0.04 0.53 10.63 101.05 1.07 1.60 16 19 C -0.15 -2.03 5.35 -90.62 -0.48 -2.52 16 20 C -0.18 -1.94 10.18 -26.70 -0.27 -2.22 16 21 C -0.17 -1.94 10.22 -26.69 -0.27 -2.21 16 22 H 0.05 0.73 6.54 -51.93 -0.34 0.39 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.05 1.23 3.22 -51.93 -0.17 1.07 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.31 5.51 6.12 -39.29 -0.24 5.27 16 29 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.09 1.87 8.04 -51.93 -0.42 1.45 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.99 6.42 -51.93 -0.33 0.65 16 34 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -31.07 299.47 -6.58 -37.65 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.49 Total: 4.16 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -0.35 Total: -16.08 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.26 Total: -41.39 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.36 Total: -6.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.07 -6.58 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382160505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.240 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds