Wall clock time and date at job start Sun Mar 29 2020 21:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47078 * 2 1 4 4 H 1.09002 * 109.46953 * 55.42102 * 3 2 1 5 5 C 1.50693 * 109.46765 * 175.42097 * 3 2 1 6 6 H 1.08009 * 119.99888 * 120.00294 * 5 3 2 7 7 C 1.37876 * 120.00316 * 299.99916 * 5 3 2 8 8 N 1.31522 * 120.00364 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99882 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47612 * 89.99927 * 9 7 5 11 11 H 1.48505 * 109.47234 * 209.99724 * 9 7 5 12 12 H 1.48506 * 109.47380 * 329.99762 * 9 7 5 13 13 N 1.46894 * 109.47196 * 295.42108 * 3 2 1 14 14 C 1.46896 * 111.00085 * 153.78676 * 13 3 2 15 15 C 1.52996 * 109.47389 * 179.97438 * 14 13 3 16 16 H 1.09006 * 109.47653 * 59.99812 * 15 14 13 17 17 O 1.42904 * 109.47073 * 300.00184 * 15 14 13 18 18 C 1.42898 * 114.00200 * 96.84785 * 17 15 14 19 19 C 1.52995 * 109.47414 * 180.02562 * 15 14 13 20 20 C 1.53001 * 117.50077 * 252.81939 * 19 15 14 21 21 C 1.53003 * 117.50377 * 184.16169 * 19 15 14 22 22 H 1.09006 * 109.46565 * 63.83576 * 1 2 3 23 23 H 1.08998 * 109.47042 * 183.82755 * 1 2 3 24 24 H 1.08996 * 109.47229 * 303.83586 * 1 2 3 25 25 H 1.09005 * 109.47406 * 239.99977 * 2 1 3 26 26 H 1.08995 * 109.46872 * 120.00242 * 2 1 3 27 27 H 0.96997 * 120.00346 * 179.97438 * 8 7 5 28 28 H 1.00904 * 110.99931 * 29.83661 * 13 3 2 29 29 H 1.09003 * 109.47194 * 299.98034 * 14 13 3 30 30 H 1.08999 * 109.46898 * 59.98399 * 14 13 3 31 31 H 1.08998 * 109.47479 * 62.64376 * 18 17 15 32 32 H 1.08994 * 109.47246 * 182.65053 * 18 17 15 33 33 H 1.09006 * 109.46538 * 302.64525 * 18 17 15 34 34 H 1.09001 * 115.54896 * 38.49030 * 19 15 14 35 35 H 1.08995 * 117.49869 * 359.97438 * 20 19 15 36 36 H 1.09004 * 117.50268 * 145.01831 * 20 19 15 37 37 H 1.08999 * 117.49871 * 214.98165 * 21 19 15 38 38 H 1.09005 * 117.49604 * 359.97208 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5427 1.4440 0.1134 6 1 4.1427 1.8905 -0.6658 7 6 4.1517 0.8754 1.2119 8 7 5.4632 0.8771 1.3112 9 14 3.1142 0.1026 2.5594 10 1 2.8911 -1.3327 2.2508 11 1 3.8205 0.2252 3.8599 12 1 1.8060 0.8009 2.6388 13 7 1.6428 2.1024 -1.2508 14 6 1.5372 3.5562 -1.0687 15 6 1.1231 4.2071 -2.3899 16 1 0.1581 3.8093 -2.7043 17 8 2.1040 3.9222 -3.3893 18 6 1.7749 2.8124 -4.2271 19 6 1.0138 5.7213 -2.2003 20 6 -0.3896 6.3301 -2.1709 21 6 0.5141 6.5477 -3.3871 22 1 -0.3633 0.4532 -0.9224 23 1 -0.3633 -1.0254 0.0686 24 1 -0.3633 0.5722 0.8536 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.8916 0.4774 2.0842 28 1 0.7788 1.7185 -1.6036 29 1 0.7890 3.7735 -0.3063 30 1 2.5022 3.9540 -0.7546 31 1 0.8621 3.0329 -4.7805 32 1 2.5900 2.6319 -4.9279 33 1 1.6216 1.9257 -3.6119 34 1 1.7708 6.1704 -1.5575 35 1 -1.2349 5.6519 -2.2871 36 1 -0.5558 7.1801 -1.5090 37 1 0.9422 7.5406 -3.5247 38 1 0.2637 6.0126 -4.3031 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382160505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:42 Heat of formation + Delta-G solvation = -40.294251 kcal Electronic energy + Delta-G solvation = -16531.394985 eV Core-core repulsion = 13988.078488 eV Total energy + Delta-G solvation = -2543.316497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96292 -38.07458 -37.03555 -34.46883 -33.41550 -30.12207 -28.75175 -26.80604 -24.55539 -23.40733 -23.09280 -21.95605 -21.17799 -18.88205 -17.66898 -17.06800 -16.95838 -16.32613 -15.80635 -15.55735 -15.28992 -14.81839 -14.44008 -14.14703 -13.96972 -13.57638 -13.28616 -13.00746 -12.69443 -12.43935 -12.38426 -12.29771 -12.14863 -11.86862 -11.68905 -11.32594 -11.28001 -11.21987 -11.01138 -10.69617 -10.26595 -9.00557 -8.26911 -6.28749 1.27268 1.32860 1.43245 2.31086 2.65383 3.05099 3.21281 3.41452 3.92380 3.98624 4.11116 4.17997 4.27464 4.32674 4.36352 4.45415 4.57161 4.62074 4.68694 4.79691 4.82232 4.84912 5.01821 5.05449 5.08011 5.10015 5.13097 5.21409 5.27889 5.29000 5.44005 5.71788 6.05489 6.43668 6.53302 6.78416 6.95817 7.35464 8.91002 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.007168 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.866415 B = 3905.442918 C = 4033.508000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.196 3.804 4 H -0.007 1.007 5 C -0.498 4.498 6 H 0.027 0.973 7 C 0.004 3.996 8 N -0.954 5.954 9 Si 0.952 3.048 10 H -0.263 1.263 11 H -0.300 1.300 12 H -0.248 1.248 13 N -0.674 5.674 14 C 0.054 3.946 15 C 0.133 3.867 16 H 0.074 0.926 17 O -0.398 6.398 18 C 0.032 3.968 19 C -0.181 4.181 20 C -0.156 4.156 21 C -0.161 4.161 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.333 0.667 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 5.716 -7.209 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.086 3.914 4 H 0.011 0.989 5 C -0.537 4.537 6 H 0.045 0.955 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.779 3.221 10 H -0.189 1.189 11 H -0.228 1.228 12 H -0.172 1.172 13 N -0.307 5.307 14 C -0.076 4.076 15 C 0.075 3.925 16 H 0.092 0.908 17 O -0.317 6.317 18 C -0.064 4.064 19 C -0.200 4.200 20 C -0.193 4.193 21 C -0.198 4.198 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.412 5.798 -7.382 18.046 hybrid contribution -0.265 -0.538 1.357 1.483 sum -15.677 5.260 -6.026 17.600 Atomic orbital electron populations 1.21838 0.94138 1.02575 1.01984 1.22006 0.96512 0.97927 1.00872 1.19403 0.93398 0.91209 0.87355 0.98930 1.21314 0.91799 1.35821 1.04766 0.95505 1.25876 0.95909 0.96843 1.00587 1.70071 1.10630 1.47664 1.31157 0.85804 0.79284 0.79576 0.77411 1.18942 1.22792 1.17217 1.60321 1.36576 1.02978 1.30838 1.22333 0.99607 0.88860 0.96820 1.21593 0.91152 0.92622 0.87096 0.90806 1.87864 1.46858 1.50388 1.46582 1.22880 1.00777 0.89263 0.93514 1.22273 0.99780 0.93155 1.04749 1.23117 0.91988 1.03091 1.01098 1.22894 1.03121 1.01031 0.92754 0.91129 0.91109 0.93253 0.91876 0.94286 0.92717 0.84770 0.94479 0.94034 0.92837 0.90274 0.93230 0.88781 0.87659 0.87219 0.87902 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 9.67 71.98 0.70 -3.69 16 2 C -0.14 -5.51 5.02 30.60 0.15 -5.35 16 3 C 0.20 9.18 1.63 44.17 0.07 9.25 16 4 H -0.01 -0.33 6.84 -2.39 -0.02 -0.34 16 5 C -0.50 -29.75 9.24 25.60 0.24 -29.51 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 7 C 0.00 0.23 5.45 84.65 0.46 0.69 16 8 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 9 Si 0.95 45.92 24.41 68.60 1.67 47.59 16 10 H -0.26 -11.96 6.83 99.48 0.68 -11.28 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 12 H -0.25 -11.03 6.53 99.48 0.65 -10.38 16 13 N -0.67 -27.12 4.78 -495.47 -2.37 -29.49 16 14 C 0.05 2.02 5.17 86.30 0.45 2.46 16 15 C 0.13 4.04 2.60 30.59 0.08 4.12 16 16 H 0.07 1.87 7.53 -2.38 -0.02 1.85 16 17 O -0.40 -13.91 10.23 -148.98 -1.52 -15.44 16 18 C 0.03 0.91 10.63 113.37 1.21 2.11 16 19 C -0.18 -4.73 5.35 -10.79 -0.06 -4.79 16 20 C -0.16 -2.92 10.18 30.62 0.31 -2.61 16 21 C -0.16 -3.31 10.22 30.62 0.31 -2.99 16 22 H 0.07 1.78 6.54 -2.38 -0.02 1.76 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 26 H 0.04 1.70 3.22 -2.39 -0.01 1.69 16 27 H 0.26 16.03 8.31 -92.71 -0.77 15.25 16 28 H 0.33 11.01 6.12 -89.69 -0.55 10.46 16 29 H 0.04 1.29 8.05 -2.39 -0.02 1.27 16 30 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.52 6.42 -2.38 -0.02 1.50 16 34 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.11 1.71 8.07 -2.39 -0.02 1.69 16 36 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -71.03 299.47 2.38 -68.64 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.39 Total: 20.68 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.92 Total: -30.30 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -2.07 Total: -91.19 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.52 Total: -15.44 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -71.03 2.38 -68.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382160505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.350 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds