Wall clock time and date at job start Sun Mar 29 2020 21:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47523 * 2 1 4 4 H 1.08998 * 109.47262 * 56.76178 * 3 2 1 5 5 C 1.50701 * 109.47544 * 176.76380 * 3 2 1 6 6 H 1.08000 * 119.99720 * 119.99426 * 5 3 2 7 7 C 1.37869 * 120.00246 * 300.00290 * 5 3 2 8 8 N 1.31516 * 119.99790 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00349 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46881 * 89.99619 * 9 7 5 11 11 H 1.48499 * 109.47107 * 210.00046 * 9 7 5 12 12 H 1.48495 * 109.46760 * 329.99584 * 9 7 5 13 13 N 1.46905 * 109.47257 * 296.76680 * 3 2 1 14 14 C 1.46892 * 111.00327 * 138.75055 * 13 3 2 15 15 C 1.53002 * 112.84966 * 66.51473 * 14 13 3 16 16 O 1.42907 * 109.46648 * 302.49513 * 15 14 13 17 17 C 1.42903 * 113.99515 * 180.02562 * 16 15 14 18 18 C 1.53782 * 113.61657 * 295.31609 * 14 13 3 19 19 C 1.53955 * 87.01863 * 220.04478 * 18 14 13 20 20 C 1.53779 * 87.11102 * 25.36333 * 19 18 14 21 21 H 1.09004 * 109.47002 * 302.59053 * 1 2 3 22 22 H 1.09000 * 109.47411 * 182.58818 * 1 2 3 23 23 H 1.08997 * 109.46700 * 62.58477 * 1 2 3 24 24 H 1.09003 * 109.47085 * 119.99844 * 2 1 3 25 25 H 1.09003 * 109.47021 * 239.99468 * 2 1 3 26 26 H 0.97005 * 120.00380 * 180.02562 * 8 7 5 27 27 H 1.00906 * 110.99532 * 14.79601 * 13 3 2 28 28 H 1.09000 * 109.47280 * 62.49089 * 15 14 13 29 29 H 1.09000 * 109.47299 * 182.50151 * 15 14 13 30 30 H 1.08998 * 109.47113 * 299.99756 * 17 16 15 31 31 H 1.09001 * 109.47468 * 59.99981 * 17 16 15 32 32 H 1.08999 * 109.46855 * 180.02562 * 17 16 15 33 33 H 1.08997 * 113.61245 * 334.56808 * 18 14 13 34 34 H 1.09006 * 113.61275 * 105.46930 * 18 14 13 35 35 H 1.08995 * 113.54205 * 270.80786 * 19 18 14 36 36 H 1.09008 * 113.73836 * 139.94044 * 19 18 14 37 37 H 1.08996 * 113.61157 * 220.08281 * 20 19 18 38 38 H 1.09001 * 113.69307 * 89.19854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6302 1.9727 0.8595 5 6 3.5449 1.4431 0.0802 6 1 4.1275 1.8957 -0.7086 7 6 4.1780 0.8660 1.1604 8 7 3.4686 0.3153 2.1212 9 14 6.0434 0.8663 1.2595 10 1 6.5015 2.0920 1.9616 11 1 6.4995 -0.3326 2.0077 12 1 6.6119 0.8397 -0.1120 13 7 1.6153 2.1120 -1.2366 14 6 1.1719 3.4860 -0.9657 15 6 2.3087 4.3949 -0.4938 16 8 2.9055 3.8406 0.6804 17 6 3.9838 4.6170 1.2061 18 6 -0.0861 3.5651 -0.0849 19 6 -0.5555 4.7123 -0.9980 20 6 0.3258 4.0945 -2.0964 21 1 -0.3633 0.5536 0.8659 22 1 -0.3634 -1.0266 0.0464 23 1 -0.3632 0.4732 -0.9122 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.9139 -0.0905 2.8815 27 1 0.8930 1.5844 -1.7037 28 1 3.0597 4.4754 -1.2797 29 1 1.9123 5.3847 -0.2672 30 1 4.7697 4.7025 0.4556 31 1 3.6218 5.6113 1.4680 32 1 4.3829 4.1293 2.0954 33 1 -0.7152 2.6767 -0.1413 34 1 0.1172 3.8766 0.9398 35 1 -0.2189 5.6956 -0.6696 36 1 -1.6211 4.6839 -1.2257 37 1 0.8609 4.8329 -2.6935 38 1 -0.1894 3.3512 -2.7048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382377287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:35 Heat of formation + Delta-G solvation = -20.231556 kcal Electronic energy + Delta-G solvation = -17539.147407 eV Core-core repulsion = 14996.700894 eV Total energy + Delta-G solvation = -2542.446513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38877 -36.16671 -35.03763 -31.68459 -30.14851 -27.45163 -26.30457 -25.36411 -24.70775 -22.88477 -21.84520 -19.32457 -18.15447 -16.06689 -15.89274 -15.15560 -15.00622 -14.54849 -14.11748 -13.60467 -13.43671 -12.83728 -12.68594 -12.27546 -11.96351 -11.75010 -11.33725 -11.23185 -11.06114 -10.73224 -10.65014 -10.54382 -10.44601 -10.01541 -9.95371 -9.69032 -9.37497 -9.25039 -8.87513 -8.58419 -8.06036 -6.99201 -5.69010 -3.62710 3.41668 3.49429 3.53454 4.54552 4.63926 5.00138 5.09927 5.18332 5.46976 5.56518 5.63149 5.82827 5.92635 6.03968 6.08988 6.13987 6.17284 6.21181 6.24041 6.25363 6.28948 6.48189 6.51561 6.58003 6.65010 6.80467 6.94964 7.25989 7.35199 7.75611 7.95156 8.16497 8.19009 8.57239 8.67073 8.99328 9.35090 9.93343 11.38476 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.011917 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.634908 B = 2348.952044 C = 3033.918907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.226 3.774 4 H 0.029 0.971 5 C -0.434 4.434 6 H 0.052 0.948 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.880 3.120 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.114 3.886 15 C 0.095 3.905 16 O -0.323 6.323 17 C 0.038 3.962 18 C -0.166 4.166 19 C -0.143 4.143 20 C -0.131 4.131 21 H 0.042 0.958 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.100 0.900 25 H 0.035 0.965 26 H 0.252 0.748 27 H 0.318 0.682 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 7.370 -4.374 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.120 3.880 4 H 0.047 0.953 5 C -0.474 4.474 6 H 0.070 0.930 7 C -0.147 4.147 8 N -0.548 5.548 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.204 1.204 13 N -0.304 5.304 14 C 0.021 3.979 15 C 0.017 3.983 16 O -0.240 6.240 17 C -0.059 4.059 18 C -0.205 4.205 19 C -0.181 4.181 20 C -0.169 4.169 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.118 0.882 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.136 0.864 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.924 7.266 -4.301 9.774 hybrid contribution 0.352 0.097 0.501 0.620 sum -4.571 7.363 -3.800 9.463 Atomic orbital electron populations 1.21910 0.99936 0.99331 0.99434 1.21977 0.90965 1.01657 1.02926 1.19122 0.95245 0.88285 0.85378 0.95330 1.20967 0.90841 1.31757 1.03797 0.92968 1.24779 0.96759 0.96998 0.96212 1.69852 1.33952 1.40758 1.10240 0.86805 0.87702 0.76967 0.77603 1.21316 1.21885 1.20397 1.60592 1.40979 1.00362 1.28515 1.22028 0.90509 0.92002 0.93390 1.21984 0.93995 0.93228 0.89127 1.88528 1.47869 1.46218 1.41414 1.22526 0.90513 0.93995 0.98847 1.23666 0.99214 0.98116 0.99544 1.22823 0.98973 0.98392 0.97942 1.23068 0.97600 0.99878 0.96384 0.93868 0.94693 0.94877 0.88214 0.94572 0.93770 0.86352 0.93706 0.95193 0.95263 0.96341 0.90321 0.90488 0.91493 0.90700 0.92077 0.91733 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.19 37.16 0.34 -2.58 16 2 C -0.14 -3.25 5.24 -26.74 -0.14 -3.39 16 3 C 0.23 5.57 1.27 -68.87 -0.09 5.48 16 4 H 0.03 0.79 5.96 -51.93 -0.31 0.48 16 5 C -0.43 -11.86 6.32 -34.44 -0.22 -12.08 16 6 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.05 1.39 5.30 -17.82 -0.09 1.29 16 8 N -0.91 -26.15 11.30 55.43 0.63 -25.52 16 9 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.67 -14.28 6.25 -93.44 -0.58 -14.87 16 14 C 0.11 2.09 1.02 -130.79 -0.13 1.95 16 15 C 0.09 1.79 5.30 37.16 0.20 1.98 16 16 O -0.32 -7.18 6.12 -35.23 -0.22 -7.39 16 17 C 0.04 0.73 11.01 101.05 1.11 1.85 16 18 C -0.17 -2.84 6.34 -25.83 -0.16 -3.00 16 19 C -0.14 -1.97 7.74 -25.83 -0.20 -2.17 16 20 C -0.13 -1.92 7.37 -25.92 -0.19 -2.11 16 21 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.03 0.58 6.47 -51.93 -0.34 0.24 16 24 H 0.10 2.69 5.99 -51.93 -0.31 2.38 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.32 6.27 6.25 -39.29 -0.25 6.02 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.50 7.31 -51.93 -0.38 0.12 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.08 1.33 7.41 -51.93 -0.39 0.94 16 34 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 36 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.06 0.88 8.10 -51.93 -0.42 0.45 16 38 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -28.87 292.99 -6.90 -35.77 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.54 Total: 3.48 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 0.42 Total: -12.77 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.04 Total: -40.39 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.22 Total: -7.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.87 -6.90 -35.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382377287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.540 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds