Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47523 * 2 1 4 4 H 1.08998 * 109.47262 * 56.76178 * 3 2 1 5 5 C 1.50701 * 109.47544 * 176.76380 * 3 2 1 6 6 H 1.08000 * 119.99720 * 119.99426 * 5 3 2 7 7 C 1.37869 * 120.00246 * 300.00290 * 5 3 2 8 8 N 1.31516 * 119.99790 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00349 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46881 * 89.99619 * 9 7 5 11 11 H 1.48499 * 109.47107 * 210.00046 * 9 7 5 12 12 H 1.48495 * 109.46760 * 329.99584 * 9 7 5 13 13 N 1.46905 * 109.47257 * 296.76680 * 3 2 1 14 14 C 1.46892 * 111.00327 * 138.75055 * 13 3 2 15 15 C 1.53002 * 112.84966 * 66.51473 * 14 13 3 16 16 O 1.42907 * 109.46648 * 302.49513 * 15 14 13 17 17 C 1.42903 * 113.99515 * 180.02562 * 16 15 14 18 18 C 1.53782 * 113.61657 * 295.31609 * 14 13 3 19 19 C 1.53955 * 87.01863 * 220.04478 * 18 14 13 20 20 C 1.53779 * 87.11102 * 25.36333 * 19 18 14 21 21 H 1.09004 * 109.47002 * 302.59053 * 1 2 3 22 22 H 1.09000 * 109.47411 * 182.58818 * 1 2 3 23 23 H 1.08997 * 109.46700 * 62.58477 * 1 2 3 24 24 H 1.09003 * 109.47085 * 119.99844 * 2 1 3 25 25 H 1.09003 * 109.47021 * 239.99468 * 2 1 3 26 26 H 0.97005 * 120.00380 * 180.02562 * 8 7 5 27 27 H 1.00906 * 110.99532 * 14.79601 * 13 3 2 28 28 H 1.09000 * 109.47280 * 62.49089 * 15 14 13 29 29 H 1.09000 * 109.47299 * 182.50151 * 15 14 13 30 30 H 1.08998 * 109.47113 * 299.99756 * 17 16 15 31 31 H 1.09001 * 109.47468 * 59.99981 * 17 16 15 32 32 H 1.08999 * 109.46855 * 180.02562 * 17 16 15 33 33 H 1.08997 * 113.61245 * 334.56808 * 18 14 13 34 34 H 1.09006 * 113.61275 * 105.46930 * 18 14 13 35 35 H 1.08995 * 113.54205 * 270.80786 * 19 18 14 36 36 H 1.09008 * 113.73836 * 139.94044 * 19 18 14 37 37 H 1.08996 * 113.61157 * 220.08281 * 20 19 18 38 38 H 1.09001 * 113.69307 * 89.19854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6302 1.9727 0.8595 5 6 3.5449 1.4431 0.0802 6 1 4.1275 1.8957 -0.7086 7 6 4.1780 0.8660 1.1604 8 7 3.4686 0.3153 2.1212 9 14 6.0434 0.8663 1.2595 10 1 6.5015 2.0920 1.9616 11 1 6.4995 -0.3326 2.0077 12 1 6.6119 0.8397 -0.1120 13 7 1.6153 2.1120 -1.2366 14 6 1.1719 3.4860 -0.9657 15 6 2.3087 4.3949 -0.4938 16 8 2.9055 3.8406 0.6804 17 6 3.9838 4.6170 1.2061 18 6 -0.0861 3.5651 -0.0849 19 6 -0.5555 4.7123 -0.9980 20 6 0.3258 4.0945 -2.0964 21 1 -0.3633 0.5536 0.8659 22 1 -0.3634 -1.0266 0.0464 23 1 -0.3632 0.4732 -0.9122 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.9139 -0.0905 2.8815 27 1 0.8930 1.5844 -1.7037 28 1 3.0597 4.4754 -1.2797 29 1 1.9123 5.3847 -0.2672 30 1 4.7697 4.7025 0.4556 31 1 3.6218 5.6113 1.4680 32 1 4.3829 4.1293 2.0954 33 1 -0.7152 2.6767 -0.1413 34 1 0.1172 3.8766 0.9398 35 1 -0.2189 5.6956 -0.6696 36 1 -1.6211 4.6839 -1.2257 37 1 0.8609 4.8329 -2.6935 38 1 -0.1894 3.3512 -2.7048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382377287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = -38.728683 kcal Electronic energy + Delta-G solvation = -17539.949502 eV Core-core repulsion = 14996.700894 eV Total energy + Delta-G solvation = -2543.248608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79405 -37.71574 -36.83670 -33.72726 -31.77120 -28.98230 -28.20346 -26.74827 -26.15418 -24.71083 -23.23531 -21.20547 -19.54592 -18.10434 -17.41424 -16.75310 -16.60340 -16.23216 -15.71869 -15.20365 -15.06429 -14.68803 -14.31767 -13.77451 -13.31642 -13.27820 -13.00559 -12.79102 -12.75722 -12.55989 -12.44527 -12.15841 -11.98912 -11.71145 -11.48321 -11.37760 -11.16125 -10.84301 -10.76990 -10.21888 -10.11413 -8.71978 -7.82151 -5.81446 1.40914 1.43916 1.51910 2.56774 3.10828 3.47152 3.61922 3.86450 3.95166 4.06940 4.26165 4.44882 4.53323 4.59360 4.61386 4.63637 4.75807 4.78804 4.84097 4.91732 4.92992 4.95636 5.12129 5.18923 5.25012 5.31568 5.42738 5.50688 5.56336 5.81675 5.99004 6.06524 6.59464 6.68188 6.84084 7.18569 7.23332 7.78080 9.22679 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.011917 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.634908 B = 2348.952044 C = 3033.918907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.241 3.759 4 H -0.002 1.002 5 C -0.432 4.432 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.927 3.073 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.277 1.277 13 N -0.680 5.680 14 C 0.092 3.908 15 C 0.091 3.909 16 O -0.362 6.362 17 C 0.037 3.963 18 C -0.168 4.168 19 C -0.124 4.124 20 C -0.118 4.118 21 H 0.034 0.966 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.249 0.751 27 H 0.327 0.673 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 8.659 -5.732 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.133 3.867 4 H 0.016 0.984 5 C -0.472 4.472 6 H 0.053 0.947 7 C -0.187 4.187 8 N -0.574 5.574 9 Si 0.756 3.244 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.203 1.203 13 N -0.311 5.311 14 C 0.000 4.000 15 C 0.014 3.986 16 O -0.280 6.280 17 C -0.060 4.060 18 C -0.208 4.208 19 C -0.161 4.161 20 C -0.156 4.156 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.146 0.854 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.989 8.574 -5.677 11.900 hybrid contribution 0.684 -0.271 0.904 1.166 sum -5.305 8.303 -4.772 10.948 Atomic orbital electron populations 1.21742 0.96565 1.00701 1.00227 1.21820 0.94027 1.00667 1.00841 1.18751 0.93574 0.88575 0.85805 0.98419 1.21105 0.92413 1.30712 1.02938 0.94727 1.25319 1.00017 0.97174 0.96188 1.69989 1.35050 1.41746 1.10626 0.86038 0.83917 0.77002 0.77462 1.20546 1.21988 1.20270 1.60447 1.42039 1.01809 1.26847 1.22370 0.91051 0.90426 0.96150 1.22155 0.94006 0.94591 0.87883 1.88457 1.48718 1.48098 1.42705 1.22563 0.90231 0.95054 0.98117 1.23614 0.98833 0.99687 0.98662 1.22761 1.00295 0.97403 0.95675 1.23030 0.96672 1.00086 0.95779 0.94656 0.92886 0.92540 0.91687 0.95157 0.94187 0.85440 0.94439 0.92464 0.94936 0.93067 0.92213 0.90872 0.93848 0.89515 0.89717 0.90227 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.19 71.98 0.66 -4.48 16 2 C -0.13 -6.47 5.24 30.59 0.16 -6.31 16 3 C 0.24 11.98 1.27 44.17 0.06 12.04 16 4 H 0.00 -0.10 5.96 -2.39 -0.01 -0.12 16 5 C -0.43 -24.03 6.32 25.60 0.16 -23.87 16 6 H 0.03 2.01 7.81 -2.91 -0.02 1.98 16 7 C 0.01 0.44 5.30 84.65 0.45 0.89 16 8 N -0.93 -55.21 11.30 21.44 0.24 -54.97 16 9 Si 0.93 45.63 29.54 68.60 2.03 47.65 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.68 -28.30 6.25 -449.53 -2.81 -31.12 16 14 C 0.09 3.24 1.02 4.06 0.00 3.24 16 15 C 0.09 3.33 5.30 71.98 0.38 3.71 16 16 O -0.36 -16.13 6.12 -148.98 -0.91 -17.04 16 17 C 0.04 1.41 11.01 113.37 1.25 2.66 16 18 C -0.17 -5.49 6.34 31.18 0.20 -5.29 16 19 C -0.12 -2.93 7.74 31.18 0.24 -2.69 16 20 C -0.12 -3.03 7.37 31.12 0.23 -2.80 16 21 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 1.87 6.47 -2.39 -0.02 1.85 16 24 H 0.06 3.60 5.99 -2.39 -0.01 3.58 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 27 H 0.33 12.34 6.25 -89.69 -0.56 11.78 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.75 7.31 -2.39 -0.02 1.73 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.41 7.41 -2.39 -0.02 2.39 16 34 H 0.04 1.59 8.10 -2.38 -0.02 1.57 16 35 H 0.09 1.88 7.60 -2.39 -0.02 1.86 16 36 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.08 1.83 8.10 -2.39 -0.02 1.82 16 38 H 0.09 2.19 7.99 -2.39 -0.02 2.17 16 Total: -1.00 -63.32 292.99 2.79 -60.52 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.46 Total: 17.84 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.79 Total: -22.90 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.57 Total: -86.08 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.91 Total: -17.04 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -63.32 2.79 -60.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382377287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.795 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds