Wall clock time and date at job start Sun Mar 29 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.32897 * 2 1 4 4 C 1.54481 * 110.36886 * 237.75389 * 2 1 3 5 5 C 1.54517 * 104.06349 * 265.14574 * 4 2 1 6 6 H 1.08991 * 110.51174 * 118.64513 * 5 4 2 7 7 N 1.46900 * 110.51181 * 241.35929 * 5 4 2 8 8 C 1.46900 * 110.99988 * 273.54426 * 7 5 4 9 9 C 1.52996 * 109.47482 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47365 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46839 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00281 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99640 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00047 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46924 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46955 * 120.00034 * 15 13 11 18 18 H 1.48502 * 109.47181 * 240.00466 * 15 13 11 19 19 C 1.54479 * 104.06037 * 0.02562 * 5 4 2 20 20 H 1.08997 * 110.37024 * 94.85221 * 19 5 4 21 21 C 1.52992 * 110.37378 * 217.18898 * 19 5 4 22 22 O 1.44422 * 110.37348 * 122.37189 * 2 1 3 23 23 H 1.09003 * 109.47108 * 182.24574 * 1 2 3 24 24 H 1.08996 * 109.47081 * 302.24848 * 1 2 3 25 25 H 1.08998 * 109.47269 * 62.24896 * 1 2 3 26 26 H 1.08996 * 110.51163 * 146.50425 * 4 2 1 27 27 H 1.08995 * 110.63589 * 23.84753 * 4 2 1 28 28 H 1.00904 * 110.99964 * 37.49757 * 7 5 4 29 29 H 1.09002 * 109.46967 * 300.00558 * 8 7 5 30 30 H 1.09003 * 109.47061 * 60.00142 * 8 7 5 31 31 H 1.09011 * 109.46824 * 300.00376 * 9 8 7 32 32 H 1.08997 * 109.47335 * 59.99440 * 9 8 7 33 33 H 1.09001 * 109.46765 * 299.99499 * 10 9 8 34 34 H 1.08994 * 109.47568 * 59.99843 * 10 9 8 35 35 H 0.96998 * 119.99699 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47320 * 60.00004 * 21 19 5 37 37 H 1.09005 * 109.47541 * 180.02562 * 21 19 5 38 38 H 1.09005 * 109.47229 * 300.00266 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 -1.2248 5 6 2.3173 -2.2001 -0.6884 6 1 1.6980 -2.9219 -1.2206 7 7 3.7384 -2.5532 -0.8064 8 6 4.0333 -3.1135 -2.1319 9 6 5.5190 -3.4688 -2.2164 10 6 5.8262 -4.0519 -3.5972 11 6 7.2896 -4.4024 -3.6801 12 1 7.9359 -4.2265 -2.8329 13 6 7.8033 -4.9477 -4.8376 14 7 7.0163 -5.1614 -5.8695 15 14 9.6172 -5.3816 -4.9408 16 1 10.2805 -5.0455 -3.6553 17 1 9.7641 -6.8349 -5.2079 18 1 10.2491 -4.6096 -6.0409 19 6 1.9003 -2.1210 0.7970 20 1 0.8672 -2.4464 0.9188 21 6 2.8336 -2.9739 1.6584 22 8 2.0328 -0.7249 1.1435 23 1 -0.3633 -1.0269 0.0403 24 1 -0.3633 0.5483 0.8691 25 1 -0.3634 0.4785 -0.9094 26 1 2.9988 -0.3291 -1.5776 27 1 1.3268 -0.7893 -2.0241 28 1 4.3263 -1.7566 -0.6116 29 1 3.4358 -4.0118 -2.2877 30 1 3.7909 -2.3783 -2.8993 31 1 6.1168 -2.5707 -2.0603 32 1 5.7610 -4.2041 -1.4491 33 1 5.2285 -4.9499 -3.7535 34 1 5.5844 -3.3163 -4.3643 35 1 7.3777 -5.5454 -6.6837 36 1 3.8560 -2.6097 1.5567 37 1 2.5263 -2.9080 2.7021 38 1 2.7835 -4.0121 1.3301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384668889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:07 Heat of formation + Delta-G solvation = -68.179817 kcal Electronic energy + Delta-G solvation = -15941.278383 eV Core-core repulsion = 13396.752678 eV Total energy + Delta-G solvation = -2544.525705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.06179 -36.03506 -33.57958 -32.48921 -31.77587 -29.86689 -28.20684 -25.81057 -24.37415 -22.46984 -21.04280 -20.53893 -19.79950 -16.55653 -16.31722 -16.02791 -15.40318 -14.71103 -14.51672 -14.25795 -13.69330 -13.56620 -13.00959 -12.43858 -12.33994 -12.13720 -11.99965 -11.77903 -11.71788 -11.39803 -10.99313 -10.97287 -10.79476 -10.74281 -10.57141 -10.44688 -9.79148 -9.67909 -9.31104 -9.02427 -8.33639 -8.13736 -5.98704 -4.00596 3.32214 3.39566 3.44312 3.80585 4.27743 4.47899 4.54346 4.73794 4.83833 4.99517 5.13579 5.23806 5.35905 5.37324 5.38448 5.53189 5.66358 5.75503 5.80081 5.82320 5.91119 5.98005 6.04290 6.10256 6.32358 6.49402 6.72868 6.76094 6.89231 7.14672 7.34293 7.62041 7.70026 7.84581 8.01916 8.45363 9.06940 9.63497 11.12812 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054887 B = 0.004340 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.012570 B = 6449.381273 C = 6689.765831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.096 0.904 4 C -0.182 4.182 5 C 0.059 3.941 6 H 0.089 0.911 7 N -0.675 5.675 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.077 3.923 20 H 0.065 0.935 21 C -0.125 4.125 22 O -0.368 6.368 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.342 0.658 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 8.403 11.146 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.114 0.886 4 C -0.221 4.221 5 C -0.052 4.052 6 H 0.107 0.893 7 N -0.305 5.305 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.019 3.981 20 H 0.083 0.917 21 C -0.183 4.183 22 O -0.288 6.288 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.740 7.791 11.463 18.826 hybrid contribution 0.759 0.504 -1.099 1.428 sum -11.980 8.295 10.364 17.882 Atomic orbital electron populations 1.22275 0.95817 1.02586 1.02315 1.22882 0.93590 0.96746 0.85482 0.88566 1.23761 1.02479 0.97383 0.98509 1.22939 0.91767 0.94671 0.95869 0.89311 1.60624 1.02641 1.36335 1.30947 1.22164 0.99241 0.98247 0.87326 1.21619 0.91708 1.00159 1.00990 1.19069 0.96477 0.95807 0.90241 1.21304 0.94485 1.40834 0.98983 0.92604 1.25035 0.97833 0.95850 0.95837 1.69980 1.35088 1.44824 1.03775 0.86541 0.85443 0.78048 0.78013 1.19701 1.21017 1.21060 1.23077 0.98608 0.82606 0.93856 0.91700 1.21508 1.00312 0.99136 0.97323 1.89189 1.84047 1.17358 1.38175 0.92191 0.91982 0.91644 0.90520 0.90421 0.83975 0.91541 0.95811 0.93699 0.92519 0.96604 0.96862 0.93114 0.90802 0.93550 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.32 37.16 0.35 -1.13 16 2 C 0.07 0.74 4.21 -25.95 -0.11 0.63 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.18 -1.99 6.22 -25.16 -0.16 -2.15 16 5 C 0.06 0.72 3.27 -66.14 -0.22 0.51 16 6 H 0.09 1.08 7.88 -51.93 -0.41 0.67 16 7 N -0.68 -9.71 4.58 -105.07 -0.48 -10.20 16 8 C 0.06 1.00 5.53 -3.83 -0.02 0.98 16 9 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.08 0.90 3.47 -25.96 -0.09 0.81 16 20 H 0.07 0.69 7.23 -51.93 -0.38 0.32 16 21 C -0.13 -1.50 8.92 37.15 0.33 -1.17 16 22 O -0.37 -4.72 11.10 -35.23 -0.39 -5.11 16 23 H 0.06 0.52 6.94 -51.93 -0.36 0.16 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 27 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 28 H 0.34 4.89 8.25 -39.29 -0.32 4.57 16 29 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 31 H 0.04 0.92 8.14 -51.92 -0.42 0.49 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 0.97 7.40 -51.93 -0.38 0.59 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -30.11 304.50 -8.03 -38.14 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.85 Total: -0.65 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.61 Total: -17.14 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.25 Total: -36.68 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.39 Total: -5.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.11 -8.03 -38.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384668889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.041 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds