Wall clock time and date at job start Sun Mar 29 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.32897 * 2 1 4 4 C 1.54481 * 110.36886 * 237.75389 * 2 1 3 5 5 C 1.54517 * 104.06349 * 265.14574 * 4 2 1 6 6 H 1.08991 * 110.51174 * 118.64513 * 5 4 2 7 7 N 1.46900 * 110.51181 * 241.35929 * 5 4 2 8 8 C 1.46900 * 110.99988 * 273.54426 * 7 5 4 9 9 C 1.52996 * 109.47482 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47365 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46839 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00281 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99640 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00047 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46924 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46955 * 120.00034 * 15 13 11 18 18 H 1.48502 * 109.47181 * 240.00466 * 15 13 11 19 19 C 1.54479 * 104.06037 * 0.02562 * 5 4 2 20 20 H 1.08997 * 110.37024 * 94.85221 * 19 5 4 21 21 C 1.52992 * 110.37378 * 217.18898 * 19 5 4 22 22 O 1.44422 * 110.37348 * 122.37189 * 2 1 3 23 23 H 1.09003 * 109.47108 * 182.24574 * 1 2 3 24 24 H 1.08996 * 109.47081 * 302.24848 * 1 2 3 25 25 H 1.08998 * 109.47269 * 62.24896 * 1 2 3 26 26 H 1.08996 * 110.51163 * 146.50425 * 4 2 1 27 27 H 1.08995 * 110.63589 * 23.84753 * 4 2 1 28 28 H 1.00904 * 110.99964 * 37.49757 * 7 5 4 29 29 H 1.09002 * 109.46967 * 300.00558 * 8 7 5 30 30 H 1.09003 * 109.47061 * 60.00142 * 8 7 5 31 31 H 1.09011 * 109.46824 * 300.00376 * 9 8 7 32 32 H 1.08997 * 109.47335 * 59.99440 * 9 8 7 33 33 H 1.09001 * 109.46765 * 299.99499 * 10 9 8 34 34 H 1.08994 * 109.47568 * 59.99843 * 10 9 8 35 35 H 0.96998 * 119.99699 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47320 * 60.00004 * 21 19 5 37 37 H 1.09005 * 109.47541 * 180.02562 * 21 19 5 38 38 H 1.09005 * 109.47229 * 300.00266 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 -1.2248 5 6 2.3173 -2.2001 -0.6884 6 1 1.6980 -2.9219 -1.2206 7 7 3.7384 -2.5532 -0.8064 8 6 4.0333 -3.1135 -2.1319 9 6 5.5190 -3.4688 -2.2164 10 6 5.8262 -4.0519 -3.5972 11 6 7.2896 -4.4024 -3.6801 12 1 7.9359 -4.2265 -2.8329 13 6 7.8033 -4.9477 -4.8376 14 7 7.0163 -5.1614 -5.8695 15 14 9.6172 -5.3816 -4.9408 16 1 10.2805 -5.0455 -3.6553 17 1 9.7641 -6.8349 -5.2079 18 1 10.2491 -4.6096 -6.0409 19 6 1.9003 -2.1210 0.7970 20 1 0.8672 -2.4464 0.9188 21 6 2.8336 -2.9739 1.6584 22 8 2.0328 -0.7249 1.1435 23 1 -0.3633 -1.0269 0.0403 24 1 -0.3633 0.5483 0.8691 25 1 -0.3634 0.4785 -0.9094 26 1 2.9988 -0.3291 -1.5776 27 1 1.3268 -0.7893 -2.0241 28 1 4.3263 -1.7566 -0.6116 29 1 3.4358 -4.0118 -2.2877 30 1 3.7909 -2.3783 -2.8993 31 1 6.1168 -2.5707 -2.0603 32 1 5.7610 -4.2041 -1.4491 33 1 5.2285 -4.9499 -3.7535 34 1 5.5844 -3.3163 -4.3643 35 1 7.3777 -5.5454 -6.6837 36 1 3.8560 -2.6097 1.5567 37 1 2.5263 -2.9080 2.7021 38 1 2.7835 -4.0121 1.3301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384668889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:07 Heat of formation + Delta-G solvation = -87.031820 kcal Electronic energy + Delta-G solvation = -15942.095867 eV Core-core repulsion = 13396.752678 eV Total energy + Delta-G solvation = -2545.343190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99124 -37.39448 -35.44387 -33.49429 -33.30305 -31.18363 -29.26409 -27.51637 -25.37220 -24.21867 -22.05645 -21.89224 -21.04382 -18.52176 -17.30070 -17.22772 -16.56195 -16.44124 -15.88509 -15.37134 -15.03111 -14.66445 -14.26045 -13.96964 -13.58996 -13.36622 -13.23551 -13.02593 -12.83266 -12.74462 -12.58603 -12.41180 -12.28608 -11.92342 -11.81757 -11.64780 -11.51215 -11.35592 -11.09207 -10.61401 -10.55957 -9.31230 -8.20633 -6.31432 1.40006 1.40322 1.53971 2.40948 2.92797 3.12645 3.16520 3.64557 3.83660 4.01957 4.12278 4.18013 4.36284 4.39995 4.43365 4.51226 4.60553 4.61601 4.73439 4.83156 4.90238 5.00186 5.06711 5.11356 5.12181 5.19144 5.24711 5.30121 5.52023 5.53376 5.75302 5.85985 5.97712 6.09856 6.27502 6.43318 6.85735 7.37952 8.91480 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054887 B = 0.004340 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.012570 B = 6449.381273 C = 6689.765831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.104 0.896 4 C -0.178 4.178 5 C 0.055 3.945 6 H 0.092 0.908 7 N -0.673 5.673 8 C 0.074 3.926 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.079 3.921 20 H 0.081 0.919 21 C -0.124 4.124 22 O -0.387 6.387 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.343 0.657 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.052 0.948 33 H -0.008 1.008 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 8.867 11.863 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 H 0.121 0.879 4 C -0.217 4.217 5 C -0.055 4.055 6 H 0.110 0.890 7 N -0.304 5.304 8 C -0.055 4.055 9 C -0.130 4.130 10 C -0.013 4.013 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.203 1.203 19 C 0.021 3.979 20 H 0.099 0.901 21 C -0.181 4.181 22 O -0.307 6.307 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.162 0.838 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.011 0.989 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.859 8.266 12.197 19.556 hybrid contribution 0.755 0.377 -1.317 1.565 sum -12.104 8.644 10.879 18.428 Atomic orbital electron populations 1.22243 0.94233 1.02842 1.03239 1.23035 0.94838 0.96706 0.84327 0.87853 1.23716 1.02506 0.96366 0.99157 1.23017 0.90173 0.95636 0.96711 0.88970 1.60545 1.04205 1.36721 1.28901 1.21841 0.96440 0.98326 0.88857 1.21368 0.94482 0.99713 0.97464 1.18972 0.95211 0.94384 0.92683 1.21736 0.95826 1.41160 0.99347 0.92344 1.25984 1.02961 0.95545 0.95364 1.70103 1.37406 1.45472 1.04443 0.85395 0.79258 0.77943 0.78436 1.18669 1.20294 1.20291 1.23100 0.99310 0.82415 0.93085 0.90105 1.21474 0.99533 0.99027 0.98060 1.89171 1.84527 1.17813 1.39227 0.92207 0.91630 0.90234 0.91393 0.89209 0.83846 0.91829 0.95900 0.93405 0.92879 0.98949 0.99097 0.92768 0.92316 0.92639 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.32 71.98 0.67 -1.81 16 2 C 0.07 1.29 4.21 31.10 0.13 1.43 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.18 -3.61 6.22 31.61 0.20 -3.41 16 5 C 0.06 1.28 3.27 45.93 0.15 1.43 16 6 H 0.09 2.09 7.88 -2.39 -0.02 2.07 16 7 N -0.67 -18.79 4.58 -486.33 -2.23 -21.02 16 8 C 0.07 2.51 5.53 86.30 0.48 2.99 16 9 C -0.09 -3.84 5.41 30.59 0.17 -3.68 16 10 C 0.03 1.34 4.97 29.85 0.15 1.49 16 11 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 13 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 14 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 15 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.08 1.73 3.47 31.09 0.11 1.83 16 20 H 0.08 1.54 7.23 -2.39 -0.02 1.52 16 21 C -0.12 -2.81 8.92 71.98 0.64 -2.17 16 22 O -0.39 -9.30 11.10 -148.98 -1.65 -10.95 16 23 H 0.06 0.88 6.94 -2.39 -0.02 0.87 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.50 7.67 -2.39 -0.02 1.48 16 27 H 0.09 1.60 7.87 -2.39 -0.02 1.58 16 28 H 0.34 9.53 8.25 -89.69 -0.74 8.79 16 29 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 30 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 31 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.06 1.50 7.40 -2.39 -0.02 1.49 16 37 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -63.82 304.50 2.08 -61.73 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.27 Total: 13.23 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.39 Total: -32.72 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.94 Total: -78.06 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -1.65 Total: -10.95 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.82 2.08 -61.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384668889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.297 kcal (2) G-P(sol) polarization free energy of solvation -63.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds