Wall clock time and date at job start Sun Mar 29 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.41382 * 2 1 4 4 C 1.54477 * 110.37491 * 237.68924 * 2 1 3 5 5 C 1.54510 * 104.18108 * 217.25643 * 4 2 1 6 6 H 1.08999 * 110.50726 * 241.28208 * 5 4 2 7 7 N 1.46897 * 110.50947 * 118.71492 * 5 4 2 8 8 C 1.46903 * 111.00305 * 86.44880 * 7 5 4 9 9 C 1.53005 * 109.47024 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46697 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46835 * 180.02562 * 10 9 8 12 12 H 1.08008 * 120.00165 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99372 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00552 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46776 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47263 * 119.99723 * 15 13 11 18 18 H 1.48495 * 109.46868 * 239.99964 * 15 13 11 19 19 C 1.54478 * 104.06500 * 359.93120 * 5 4 2 20 20 H 1.09003 * 110.36949 * 265.14479 * 19 5 4 21 21 C 1.52995 * 110.37213 * 142.81344 * 19 5 4 22 22 O 1.44415 * 104.80258 * 23.97587 * 19 5 4 23 23 H 1.09006 * 109.46669 * 182.31372 * 1 2 3 24 24 H 1.08998 * 109.47481 * 302.31188 * 1 2 3 25 25 H 1.08994 * 109.46981 * 62.31486 * 1 2 3 26 26 H 1.09002 * 110.51371 * 98.54158 * 4 2 1 27 27 H 1.08994 * 110.51108 * 335.96806 * 4 2 1 28 28 H 1.00904 * 111.00022 * 322.49294 * 7 5 4 29 29 H 1.08993 * 109.47162 * 300.00194 * 8 7 5 30 30 H 1.09001 * 109.46949 * 59.99999 * 8 7 5 31 31 H 1.09004 * 109.47129 * 299.99653 * 9 8 7 32 32 H 1.09001 * 109.47230 * 60.00206 * 9 8 7 33 33 H 1.08999 * 109.47190 * 299.99528 * 10 9 8 34 34 H 1.09001 * 109.47432 * 59.99938 * 10 9 8 35 35 H 0.96998 * 119.99615 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47342 * 59.99294 * 21 19 5 37 37 H 1.09003 * 109.47259 * 180.02562 * 21 19 5 38 38 H 1.09006 * 109.46692 * 299.99758 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3174 -1.5083 -0.6882 6 1 4.2102 -1.1812 -1.2211 7 7 3.1511 -2.9628 -0.8095 8 6 3.5736 -3.4322 -2.1358 9 6 3.3866 -4.9483 -2.2236 10 6 3.8273 -5.4373 -3.6048 11 6 3.6426 -6.9304 -3.6914 12 1 3.2506 -7.4761 -2.8458 13 6 3.9750 -7.6001 -4.8499 14 7 4.4528 -6.9357 -5.8794 15 14 3.7468 -9.4510 -4.9572 16 1 3.1983 -9.9573 -3.6734 17 1 2.8040 -9.7705 -6.0591 18 1 5.0572 -10.0966 -5.2240 19 6 3.3901 -1.0908 0.7973 20 1 4.0571 -0.2373 0.9193 21 6 3.8622 -2.2643 1.6579 22 8 2.0369 -0.7250 1.1444 23 1 -0.3633 -1.0269 0.0415 24 1 -0.3634 0.5493 0.8685 25 1 -0.3633 0.4774 -0.9100 26 1 2.3430 -0.0840 -2.0215 27 1 1.3268 -1.4903 -1.5786 28 1 2.1991 -3.2353 -0.6157 29 1 2.9701 -2.9464 -2.9024 30 1 4.6242 -3.1865 -2.2906 31 1 3.9906 -5.4338 -1.4569 32 1 2.3362 -5.1945 -2.0686 33 1 3.2237 -4.9518 -4.3717 34 1 4.8778 -5.1912 -3.7593 35 1 4.6864 -7.4068 -6.6945 36 1 4.8519 -2.5811 1.3290 37 1 3.9077 -1.9542 2.7019 38 1 3.1626 -3.0941 1.5559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384668892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:12 Heat of formation + Delta-G solvation = -69.009972 kcal Electronic energy + Delta-G solvation = -15920.440918 eV Core-core repulsion = 13375.879214 eV Total energy + Delta-G solvation = -2544.561704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90758 -36.00439 -33.58699 -32.75311 -31.76159 -29.75106 -28.39151 -25.85618 -23.71604 -22.42586 -21.34766 -20.56277 -19.89400 -16.84887 -16.16865 -15.91480 -15.38373 -14.82013 -14.43502 -14.10677 -13.90417 -13.13593 -13.12850 -12.57478 -12.26903 -12.19233 -11.86865 -11.78394 -11.73451 -11.39664 -11.02257 -10.94937 -10.82672 -10.72683 -10.57337 -10.43583 -9.81415 -9.67643 -9.31452 -9.02593 -8.33728 -8.13690 -5.98781 -4.00655 3.32147 3.39512 3.44249 3.75173 4.27466 4.48295 4.58277 4.64896 4.90918 4.98609 5.20925 5.24400 5.37269 5.39419 5.46063 5.52868 5.65718 5.68723 5.81020 5.87305 5.91758 5.98905 6.02826 6.10943 6.32225 6.49507 6.72688 6.76121 6.90641 7.14537 7.34132 7.61820 7.69910 7.84485 8.01837 8.45306 9.06854 9.63445 11.12768 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045955 B = 0.004432 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.146749 B = 6316.883579 C = 6498.768704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 H 0.065 0.935 4 C -0.183 4.183 5 C 0.058 3.942 6 H 0.089 0.911 7 N -0.675 5.675 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.078 3.922 20 H 0.065 0.935 21 C -0.125 4.125 22 O -0.372 6.372 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.341 0.659 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 14.331 11.150 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.083 0.917 4 C -0.222 4.222 5 C -0.053 4.053 6 H 0.107 0.893 7 N -0.305 5.305 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C 0.020 3.980 20 H 0.083 0.917 21 C -0.182 4.182 22 O -0.292 6.292 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.160 0.840 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.697 14.094 11.466 18.541 hybrid contribution -0.706 -0.548 -1.092 1.411 sum -4.403 13.546 10.373 17.621 Atomic orbital electron populations 1.21793 0.93375 1.03017 1.02115 1.22905 0.95149 0.95129 0.85412 0.91722 1.23778 0.99122 1.00833 0.98498 1.22955 0.97357 0.89149 0.95888 0.89281 1.60619 1.29268 1.09716 1.30897 1.22166 0.99868 0.97640 0.87303 1.21621 1.00320 0.91537 1.00992 1.19069 0.96519 0.95769 0.90230 1.21302 1.42334 0.92952 0.99013 0.92614 1.25033 0.95314 0.98346 0.95850 1.69979 1.44312 1.35552 1.03825 0.86540 0.77759 0.85735 0.78011 1.19706 1.21061 1.21015 1.23051 0.84004 0.97080 0.93875 0.91731 1.21504 1.02211 0.97187 0.97326 1.89175 1.27649 1.74411 1.37945 0.91690 0.92056 0.91334 0.90601 0.90357 0.84001 0.95814 0.91527 0.92523 0.93701 0.96869 0.96600 0.93114 0.91036 0.93535 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.52 37.16 0.35 -1.00 16 2 C 0.07 0.76 3.93 -25.95 -0.10 0.66 16 3 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.18 -2.03 6.22 -25.16 -0.16 -2.19 16 5 C 0.06 0.72 3.27 -66.15 -0.22 0.50 16 6 H 0.09 1.08 7.88 -51.93 -0.41 0.67 16 7 N -0.67 -9.73 4.59 -105.07 -0.48 -10.22 16 8 C 0.06 1.00 5.53 -3.82 -0.02 0.98 16 9 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.08 0.93 3.90 -25.96 -0.10 0.83 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.12 -1.49 8.93 37.16 0.33 -1.16 16 22 O -0.37 -4.82 11.05 -35.23 -0.39 -5.21 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.93 7.40 -51.93 -0.38 0.54 16 28 H 0.34 4.91 8.25 -39.29 -0.32 4.59 16 29 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.97 7.41 -51.93 -0.38 0.59 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -30.14 306.92 -8.09 -38.23 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.96 Total: -0.81 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.61 Total: -16.98 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.25 Total: -36.70 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.39 Total: -5.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.14 -8.09 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384668892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.778 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds