Wall clock time and date at job start Sun Mar 29 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.41382 * 2 1 4 4 C 1.54477 * 110.37491 * 237.68924 * 2 1 3 5 5 C 1.54510 * 104.18108 * 217.25643 * 4 2 1 6 6 H 1.08999 * 110.50726 * 241.28208 * 5 4 2 7 7 N 1.46897 * 110.50947 * 118.71492 * 5 4 2 8 8 C 1.46903 * 111.00305 * 86.44880 * 7 5 4 9 9 C 1.53005 * 109.47024 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46697 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46835 * 180.02562 * 10 9 8 12 12 H 1.08008 * 120.00165 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99372 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00552 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46776 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47263 * 119.99723 * 15 13 11 18 18 H 1.48495 * 109.46868 * 239.99964 * 15 13 11 19 19 C 1.54478 * 104.06500 * 359.93120 * 5 4 2 20 20 H 1.09003 * 110.36949 * 265.14479 * 19 5 4 21 21 C 1.52995 * 110.37213 * 142.81344 * 19 5 4 22 22 O 1.44415 * 104.80258 * 23.97587 * 19 5 4 23 23 H 1.09006 * 109.46669 * 182.31372 * 1 2 3 24 24 H 1.08998 * 109.47481 * 302.31188 * 1 2 3 25 25 H 1.08994 * 109.46981 * 62.31486 * 1 2 3 26 26 H 1.09002 * 110.51371 * 98.54158 * 4 2 1 27 27 H 1.08994 * 110.51108 * 335.96806 * 4 2 1 28 28 H 1.00904 * 111.00022 * 322.49294 * 7 5 4 29 29 H 1.08993 * 109.47162 * 300.00194 * 8 7 5 30 30 H 1.09001 * 109.46949 * 59.99999 * 8 7 5 31 31 H 1.09004 * 109.47129 * 299.99653 * 9 8 7 32 32 H 1.09001 * 109.47230 * 60.00206 * 9 8 7 33 33 H 1.08999 * 109.47190 * 299.99528 * 10 9 8 34 34 H 1.09001 * 109.47432 * 59.99938 * 10 9 8 35 35 H 0.96998 * 119.99615 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47342 * 59.99294 * 21 19 5 37 37 H 1.09003 * 109.47259 * 180.02562 * 21 19 5 38 38 H 1.09006 * 109.46692 * 299.99758 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3174 -1.5083 -0.6882 6 1 4.2102 -1.1812 -1.2211 7 7 3.1511 -2.9628 -0.8095 8 6 3.5736 -3.4322 -2.1358 9 6 3.3866 -4.9483 -2.2236 10 6 3.8273 -5.4373 -3.6048 11 6 3.6426 -6.9304 -3.6914 12 1 3.2506 -7.4761 -2.8458 13 6 3.9750 -7.6001 -4.8499 14 7 4.4528 -6.9357 -5.8794 15 14 3.7468 -9.4510 -4.9572 16 1 3.1983 -9.9573 -3.6734 17 1 2.8040 -9.7705 -6.0591 18 1 5.0572 -10.0966 -5.2240 19 6 3.3901 -1.0908 0.7973 20 1 4.0571 -0.2373 0.9193 21 6 3.8622 -2.2643 1.6579 22 8 2.0369 -0.7250 1.1444 23 1 -0.3633 -1.0269 0.0415 24 1 -0.3634 0.5493 0.8685 25 1 -0.3633 0.4774 -0.9100 26 1 2.3430 -0.0840 -2.0215 27 1 1.3268 -1.4903 -1.5786 28 1 2.1991 -3.2353 -0.6157 29 1 2.9701 -2.9464 -2.9024 30 1 4.6242 -3.1865 -2.2906 31 1 3.9906 -5.4338 -1.4569 32 1 2.3362 -5.1945 -2.0686 33 1 3.2237 -4.9518 -4.3717 34 1 4.8778 -5.1912 -3.7593 35 1 4.6864 -7.4068 -6.6945 36 1 4.8519 -2.5811 1.3290 37 1 3.9077 -1.9542 2.7019 38 1 3.1626 -3.0941 1.5559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384668892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:12 Heat of formation + Delta-G solvation = -87.802019 kcal Electronic energy + Delta-G solvation = -15921.255802 eV Core-core repulsion = 13375.879214 eV Total energy + Delta-G solvation = -2545.376588 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85038 -37.36690 -35.44191 -33.66613 -33.40259 -31.09531 -29.40987 -27.61797 -24.84302 -24.05509 -22.21051 -22.01846 -21.18804 -18.53924 -17.64202 -16.92611 -16.54997 -16.41986 -15.96338 -15.29982 -15.18315 -14.38640 -14.24045 -13.91426 -13.68051 -13.41731 -13.21533 -13.11667 -12.78141 -12.71438 -12.57017 -12.42750 -12.28410 -11.97500 -11.80605 -11.64965 -11.53000 -11.35269 -11.08158 -10.65552 -10.56015 -9.31262 -8.20679 -6.31459 1.39970 1.40324 1.53951 2.40932 2.87790 3.12667 3.15526 3.66847 3.76957 4.04969 4.07682 4.21127 4.35683 4.41060 4.44410 4.51971 4.60549 4.69983 4.73345 4.77749 4.84849 4.98999 5.07595 5.10959 5.12579 5.18924 5.24411 5.25597 5.51935 5.53428 5.75172 5.85885 5.98450 6.10098 6.27442 6.42586 6.85672 7.37947 8.91479 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045955 B = 0.004432 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.146749 B = 6316.883579 C = 6498.768704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 H 0.081 0.919 4 C -0.179 4.179 5 C 0.054 3.946 6 H 0.093 0.907 7 N -0.673 5.673 8 C 0.074 3.926 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.079 3.921 20 H 0.082 0.918 21 C -0.122 4.122 22 O -0.391 6.391 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.342 0.658 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.047 0.953 33 H -0.009 1.009 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 14.590 11.857 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 H 0.099 0.901 4 C -0.219 4.219 5 C -0.057 4.057 6 H 0.111 0.889 7 N -0.303 5.303 8 C -0.055 4.055 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.203 1.203 19 C 0.021 3.979 20 H 0.100 0.900 21 C -0.180 4.180 22 O -0.311 6.311 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.009 0.991 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.135 14.368 12.189 19.290 hybrid contribution -0.569 -0.581 -1.307 1.539 sum -4.704 13.787 10.883 18.184 Atomic orbital electron populations 1.21806 0.92523 1.02609 1.03216 1.23075 0.95906 0.95496 0.84313 0.90144 1.23734 0.98160 1.00812 0.99145 1.23040 0.98226 0.87661 0.96742 0.88861 1.60541 1.29369 1.11546 1.28853 1.21843 0.99807 0.94983 0.88827 1.21369 1.00046 0.94135 0.97471 1.18971 0.94695 0.94904 0.92666 1.21734 1.42552 0.94398 0.99377 0.92361 1.25979 0.94745 1.03724 0.95374 1.70102 1.45064 1.37775 1.04491 0.85395 0.77982 0.79226 0.78431 1.18678 1.20289 1.20295 1.23099 0.84121 0.97565 0.93112 0.89972 1.21465 1.01654 0.96814 0.98055 1.89162 1.28096 1.74868 1.39011 0.92798 0.91517 0.89746 0.89294 0.91284 0.83915 0.95912 0.91791 0.92888 0.93422 0.99106 0.98941 0.92767 0.91132 0.92625 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.52 71.98 0.69 -1.73 16 2 C 0.07 1.33 3.93 31.10 0.12 1.46 16 3 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.18 -3.66 6.22 31.61 0.20 -3.46 16 5 C 0.05 1.26 3.27 45.93 0.15 1.41 16 6 H 0.09 2.10 7.88 -2.39 -0.02 2.08 16 7 N -0.67 -18.82 4.59 -486.33 -2.23 -21.06 16 8 C 0.07 2.51 5.53 86.30 0.48 2.99 16 9 C -0.09 -3.84 5.41 30.60 0.17 -3.68 16 10 C 0.03 1.35 4.97 29.85 0.15 1.50 16 11 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.08 1.74 3.90 31.10 0.12 1.86 16 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 21 C -0.12 -2.78 8.93 71.98 0.64 -2.14 16 22 O -0.39 -9.47 11.05 -148.98 -1.65 -11.11 16 23 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.55 7.40 -2.39 -0.02 1.53 16 28 H 0.34 9.59 8.25 -89.69 -0.74 8.85 16 29 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 30 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.49 7.41 -2.38 -0.02 1.47 16 Total: -1.00 -63.89 306.92 2.10 -61.80 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.26 Total: 13.25 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.41 Total: -32.60 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.95 Total: -78.09 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.65 Total: -11.11 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.89 2.10 -61.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384668892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.006 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds