Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 H 1.09005 * 109.46965 * 305.62715 * 3 2 1 5 5 C 1.50698 * 109.46870 * 185.63412 * 3 2 1 6 6 H 1.08001 * 119.99822 * 239.99375 * 5 3 2 7 7 C 1.37871 * 120.00379 * 60.00111 * 5 3 2 8 8 N 1.31514 * 119.99991 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47078 * 59.99704 * 9 7 5 11 11 H 1.48496 * 109.47221 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46851 * 299.99429 * 9 7 5 13 13 N 1.46893 * 109.47444 * 65.63055 * 3 2 1 14 14 C 1.46901 * 111.00320 * 261.60109 * 13 3 2 15 15 H 1.09008 * 110.90605 * 42.17813 * 14 13 3 16 16 C 1.55305 * 110.84813 * 278.59836 * 14 13 3 17 17 C 1.54947 * 100.94208 * 275.94127 * 16 14 13 18 18 H 1.09000 * 110.30947 * 82.46698 * 17 16 14 19 19 C 1.52993 * 110.39615 * 204.59789 * 17 16 14 20 20 O 1.43651 * 105.13156 * 323.55631 * 17 16 14 21 21 C 1.43231 * 109.97621 * 24.42691 * 20 17 16 22 22 H 1.08998 * 109.83257 * 238.68772 * 21 20 17 23 23 C 1.53006 * 109.83198 * 117.80280 * 21 20 17 24 24 H 1.09001 * 109.46722 * 174.81162 * 1 2 3 25 25 H 1.08992 * 109.47057 * 294.80899 * 1 2 3 26 26 H 1.09003 * 109.47004 * 54.81282 * 1 2 3 27 27 H 1.09000 * 109.47131 * 240.00069 * 2 1 3 28 28 H 1.08996 * 109.46864 * 119.99779 * 2 1 3 29 29 H 0.97006 * 120.00262 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00205 * 25.55248 * 13 3 2 31 31 H 1.08999 * 111.12850 * 158.01987 * 16 14 13 32 32 H 1.08998 * 111.15937 * 33.87380 * 16 14 13 33 33 H 1.09000 * 109.47713 * 177.21343 * 19 17 16 34 34 H 1.08998 * 109.47002 * 297.21742 * 19 17 16 35 35 H 1.09005 * 109.47352 * 57.20995 * 19 17 16 36 36 H 1.08997 * 109.46777 * 61.45086 * 23 21 20 37 37 H 1.08992 * 109.46923 * 181.45773 * 23 21 20 38 38 H 1.09000 * 109.46691 * 301.45741 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1395 6 1 4.1539 1.8866 0.6319 7 6 4.1304 0.8831 -1.2518 8 7 3.3836 0.3447 -2.1910 9 14 5.9905 0.8853 -1.4244 10 1 6.5940 0.1463 -0.2865 11 1 6.3701 0.2256 -2.6995 12 1 6.4859 2.2852 -1.4241 13 7 1.6645 2.0947 1.2615 14 6 0.4536 2.9092 1.0930 15 1 -0.2852 2.3868 0.4852 16 6 0.7991 4.2919 0.4759 17 6 1.2082 5.0854 1.7423 18 1 2.2457 4.8749 2.0019 19 6 1.0116 6.5860 1.5180 20 8 0.3302 4.6169 2.7782 21 6 -0.1400 3.3011 2.4632 22 1 -1.2287 3.3004 2.4098 23 6 0.3277 2.3127 3.5334 24 1 -0.3633 -1.0235 -0.0929 25 1 -0.3633 0.4312 0.9328 26 1 -0.3633 0.5922 -0.8399 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7985 -0.0502 -2.9739 30 1 1.5437 1.4155 1.9978 31 1 -0.0731 4.7377 -0.0023 32 1 1.6307 4.2135 -0.2243 33 1 1.2564 7.1253 2.4330 34 1 1.6649 6.9215 0.7126 35 1 -0.0265 6.7802 1.2484 36 1 -0.0887 2.5990 4.4992 37 1 -0.0112 1.3097 3.2745 38 1 1.4162 2.3254 3.5888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384858868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = -55.503410 kcal Electronic energy + Delta-G solvation = -17029.324682 eV Core-core repulsion = 14485.348667 eV Total energy + Delta-G solvation = -2543.976015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51536 -36.10690 -32.90990 -32.22132 -31.25101 -29.19216 -28.15163 -26.13620 -23.61807 -22.75824 -20.73091 -19.64069 -19.52577 -16.66801 -16.33252 -15.39337 -14.71674 -14.42683 -14.04606 -13.80901 -13.16119 -12.91333 -12.78089 -12.36974 -12.19130 -11.71239 -11.57126 -11.51947 -11.28748 -11.18474 -10.86919 -10.70687 -10.65806 -10.39038 -10.29071 -10.03816 -9.75855 -9.69565 -9.10827 -9.00871 -8.32857 -7.20351 -5.97726 -4.00935 3.34168 3.38303 3.41801 4.15797 4.43846 4.99583 5.09797 5.22372 5.31972 5.37624 5.58417 5.65013 5.69054 5.75364 5.95437 6.00734 6.05977 6.09969 6.10553 6.20522 6.35208 6.36304 6.39525 6.53829 6.60726 6.67483 6.78122 6.94642 7.19150 7.38347 7.49518 7.74515 7.90364 8.30100 8.55907 8.60106 9.06834 9.64249 11.08214 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.008751 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.131262 B = 3198.721483 C = 3769.378229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.218 3.782 4 H 0.030 0.970 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.056 3.944 15 H 0.054 0.946 16 C -0.140 4.140 17 C 0.085 3.915 18 H 0.077 0.923 19 C -0.149 4.149 20 O -0.382 6.382 21 C 0.081 3.919 22 H 0.069 0.931 23 C -0.165 4.165 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.100 0.900 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 5.071 5.889 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.110 3.890 4 H 0.048 0.952 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.055 4.055 15 H 0.071 0.929 16 C -0.178 4.178 17 C 0.028 3.972 18 H 0.094 0.906 19 C -0.206 4.206 20 O -0.302 6.302 21 C 0.023 3.977 22 H 0.087 0.913 23 C -0.222 4.222 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.089 5.619 5.805 10.117 hybrid contribution 0.316 -0.973 -0.502 1.139 sum -5.774 4.647 5.303 9.113 Atomic orbital electron populations 1.21935 0.99593 0.99546 0.99544 1.22256 0.91472 1.02125 1.02979 1.19212 0.95406 0.88569 0.85803 0.95170 1.21176 0.91222 1.36019 1.04581 0.92021 1.24953 0.98046 0.95648 0.95924 1.69859 1.34752 1.39569 1.09582 0.86604 0.85809 0.78161 0.77048 1.20421 1.21546 1.20367 1.60928 1.30935 1.28642 1.10292 1.23021 0.92993 0.95347 0.94149 0.92869 1.23287 1.01925 0.94633 0.97953 1.22838 0.94491 0.93090 0.86752 0.90551 1.21893 1.01932 0.95178 1.01621 1.88320 1.65022 1.30837 1.46058 1.22743 0.97045 0.83427 0.94463 0.91350 1.22098 1.03509 0.98136 0.98487 0.94618 0.94804 0.93731 0.88148 0.94708 0.93066 0.84917 0.91671 0.88898 0.92497 0.91456 0.92587 0.92710 0.92058 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.58 37.16 0.32 -2.51 16 2 C -0.15 -3.39 5.12 -26.73 -0.14 -3.53 16 3 C 0.22 5.20 1.92 -68.87 -0.13 5.07 16 4 H 0.03 0.80 7.31 -51.93 -0.38 0.42 16 5 C -0.49 -13.22 8.84 -34.44 -0.30 -13.52 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.13 11.29 55.43 0.63 -24.50 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.68 5.43 -98.92 -0.54 -14.21 16 14 C 0.06 0.99 2.30 -65.77 -0.15 0.84 16 15 H 0.05 0.96 5.93 -51.92 -0.31 0.65 16 16 C -0.14 -2.40 6.05 -24.48 -0.15 -2.55 16 17 C 0.09 1.39 4.06 -25.71 -0.10 1.29 16 18 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 19 C -0.15 -1.98 9.62 37.15 0.36 -1.62 16 20 O -0.38 -6.53 10.70 -35.23 -0.38 -6.91 16 21 C 0.08 1.29 4.14 -26.00 -0.11 1.19 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 23 C -0.16 -2.42 8.25 37.16 0.31 -2.11 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.58 6.75 -51.93 -0.35 0.23 16 26 H 0.04 0.86 7.97 -51.93 -0.41 0.44 16 27 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 28 H 0.03 0.78 8.01 -51.93 -0.42 0.36 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.33 6.38 5.34 -39.29 -0.21 6.17 16 31 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.09 1.80 7.72 -51.93 -0.40 1.40 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.84 7.79 -51.93 -0.40 0.43 16 38 H 0.08 1.25 6.98 -51.93 -0.36 0.89 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -27.44 293.36 -7.56 -35.00 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.48 Total: 5.99 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.20 Total: -16.07 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.09 Total: -38.72 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.38 Total: -6.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.44 -7.56 -35.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384858868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.507 kcal (2) G-P(sol) polarization free energy of solvation -27.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds