Wall clock time and date at job start Sun Mar 29 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 H 1.09005 * 109.46965 * 305.62715 * 3 2 1 5 5 C 1.50698 * 109.46870 * 185.63412 * 3 2 1 6 6 H 1.08001 * 119.99822 * 239.99375 * 5 3 2 7 7 C 1.37871 * 120.00379 * 60.00111 * 5 3 2 8 8 N 1.31514 * 119.99991 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47078 * 59.99704 * 9 7 5 11 11 H 1.48496 * 109.47221 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46851 * 299.99429 * 9 7 5 13 13 N 1.46893 * 109.47444 * 65.63055 * 3 2 1 14 14 C 1.46901 * 111.00320 * 261.60109 * 13 3 2 15 15 H 1.09008 * 110.90605 * 42.17813 * 14 13 3 16 16 C 1.55305 * 110.84813 * 278.59836 * 14 13 3 17 17 C 1.54947 * 100.94208 * 275.94127 * 16 14 13 18 18 H 1.09000 * 110.30947 * 82.46698 * 17 16 14 19 19 C 1.52993 * 110.39615 * 204.59789 * 17 16 14 20 20 O 1.43651 * 105.13156 * 323.55631 * 17 16 14 21 21 C 1.43231 * 109.97621 * 24.42691 * 20 17 16 22 22 H 1.08998 * 109.83257 * 238.68772 * 21 20 17 23 23 C 1.53006 * 109.83198 * 117.80280 * 21 20 17 24 24 H 1.09001 * 109.46722 * 174.81162 * 1 2 3 25 25 H 1.08992 * 109.47057 * 294.80899 * 1 2 3 26 26 H 1.09003 * 109.47004 * 54.81282 * 1 2 3 27 27 H 1.09000 * 109.47131 * 240.00069 * 2 1 3 28 28 H 1.08996 * 109.46864 * 119.99779 * 2 1 3 29 29 H 0.97006 * 120.00262 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00205 * 25.55248 * 13 3 2 31 31 H 1.08999 * 111.12850 * 158.01987 * 16 14 13 32 32 H 1.08998 * 111.15937 * 33.87380 * 16 14 13 33 33 H 1.09000 * 109.47713 * 177.21343 * 19 17 16 34 34 H 1.08998 * 109.47002 * 297.21742 * 19 17 16 35 35 H 1.09005 * 109.47352 * 57.20995 * 19 17 16 36 36 H 1.08997 * 109.46777 * 61.45086 * 23 21 20 37 37 H 1.08992 * 109.46923 * 181.45773 * 23 21 20 38 38 H 1.09000 * 109.46691 * 301.45741 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1395 6 1 4.1539 1.8866 0.6319 7 6 4.1304 0.8831 -1.2518 8 7 3.3836 0.3447 -2.1910 9 14 5.9905 0.8853 -1.4244 10 1 6.5940 0.1463 -0.2865 11 1 6.3701 0.2256 -2.6995 12 1 6.4859 2.2852 -1.4241 13 7 1.6645 2.0947 1.2615 14 6 0.4536 2.9092 1.0930 15 1 -0.2852 2.3868 0.4852 16 6 0.7991 4.2919 0.4759 17 6 1.2082 5.0854 1.7423 18 1 2.2457 4.8749 2.0019 19 6 1.0116 6.5860 1.5180 20 8 0.3302 4.6169 2.7782 21 6 -0.1400 3.3011 2.4632 22 1 -1.2287 3.3004 2.4098 23 6 0.3277 2.3127 3.5334 24 1 -0.3633 -1.0235 -0.0929 25 1 -0.3633 0.4312 0.9328 26 1 -0.3633 0.5922 -0.8399 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7985 -0.0502 -2.9739 30 1 1.5437 1.4155 1.9978 31 1 -0.0731 4.7377 -0.0023 32 1 1.6307 4.2135 -0.2243 33 1 1.2564 7.1253 2.4330 34 1 1.6649 6.9215 0.7126 35 1 -0.0265 6.7802 1.2484 36 1 -0.0887 2.5990 4.4992 37 1 -0.0112 1.3097 3.2745 38 1 1.4162 2.3254 3.5888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384858868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:36 Heat of formation + Delta-G solvation = -72.400263 kcal Electronic energy + Delta-G solvation = -17030.057385 eV Core-core repulsion = 14485.348667 eV Total energy + Delta-G solvation = -2544.708718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88713 -37.80523 -34.66453 -33.55430 -32.95742 -30.69052 -29.47231 -28.00039 -25.02676 -24.44700 -22.20729 -21.25186 -20.99893 -18.42490 -17.93636 -16.92607 -16.53525 -15.91045 -15.55201 -15.31138 -14.78293 -14.45298 -14.11843 -13.72744 -13.58475 -13.22573 -13.09335 -12.90620 -12.83678 -12.68937 -12.60508 -12.49886 -12.12602 -11.94237 -11.75937 -11.69284 -11.55428 -11.35593 -10.96195 -10.40285 -10.37098 -8.87975 -8.05545 -6.15864 1.43056 1.43462 1.51274 2.44929 2.88629 3.20902 3.59114 3.65227 3.94020 4.07910 4.30799 4.42891 4.43129 4.50195 4.52215 4.57553 4.68173 4.71448 4.78056 4.88438 4.93738 5.05208 5.10534 5.11740 5.21153 5.29434 5.36409 5.38876 5.40317 5.58100 5.75816 5.89225 6.20140 6.36900 6.71217 6.89301 6.98811 7.53519 8.97874 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.008751 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.131262 B = 3198.721483 C = 3769.378229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.227 3.773 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.051 3.949 15 H 0.054 0.946 16 C -0.139 4.139 17 C 0.087 3.913 18 H 0.053 0.947 19 C -0.142 4.142 20 O -0.390 6.390 21 C 0.082 3.918 22 H 0.092 0.908 23 C -0.161 4.161 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.336 0.664 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 5.501 6.834 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.119 3.881 4 H 0.018 0.982 5 C -0.548 4.548 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.310 5.310 14 C -0.059 4.059 15 H 0.072 0.928 16 C -0.177 4.177 17 C 0.030 3.970 18 H 0.071 0.929 19 C -0.200 4.200 20 O -0.310 6.310 21 C 0.024 3.976 22 H 0.110 0.890 23 C -0.219 4.219 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.988 6.054 6.765 11.457 hybrid contribution 0.581 -1.093 -0.777 1.462 sum -6.407 4.961 5.988 10.075 Atomic orbital electron populations 1.21790 0.96447 1.00819 1.00380 1.22080 0.94292 1.00731 1.01242 1.18909 0.93703 0.89140 0.86340 0.98196 1.21481 0.93032 1.35914 1.04407 0.93252 1.25630 1.01929 0.95436 0.95736 1.69987 1.36132 1.40046 1.09838 0.85703 0.81214 0.78121 0.77083 1.19954 1.21129 1.20136 1.60782 1.32915 1.28559 1.08772 1.23093 0.91981 0.95046 0.95819 0.92780 1.23261 1.01626 0.94939 0.97886 1.22802 0.93255 0.94994 0.85980 0.92913 1.21853 1.02903 0.92749 1.02456 1.88313 1.65033 1.31321 1.46346 1.22858 0.98131 0.83233 0.93339 0.89036 1.22062 1.02310 0.98517 0.99004 0.92842 0.92663 0.94402 0.91471 0.94747 0.93183 0.84228 0.89623 0.91901 0.91609 0.90581 0.91464 0.91030 0.90874 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 8.58 71.98 0.62 -4.39 16 2 C -0.14 -6.58 5.12 30.60 0.16 -6.42 16 3 C 0.23 11.06 1.92 44.17 0.08 11.15 16 4 H 0.00 0.01 7.31 -2.38 -0.02 -0.01 16 5 C -0.51 -28.01 8.84 25.60 0.23 -27.79 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.59 5.29 84.65 0.45 1.04 16 8 N -0.92 -52.43 11.29 21.44 0.24 -52.19 16 9 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.68 -27.41 5.43 -466.87 -2.54 -29.94 16 14 C 0.05 1.77 2.30 46.18 0.11 1.88 16 15 H 0.05 1.88 5.93 -2.38 -0.01 1.86 16 16 C -0.14 -4.71 6.05 32.05 0.19 -4.51 16 17 C 0.09 2.76 4.06 31.26 0.13 2.88 16 18 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 19 C -0.14 -3.52 9.62 71.98 0.69 -2.83 16 20 O -0.39 -12.55 10.70 -148.98 -1.59 -14.15 16 21 C 0.08 2.43 4.14 31.07 0.13 2.55 16 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 23 C -0.16 -4.36 8.25 71.98 0.59 -3.77 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.76 6.75 -2.39 -0.02 1.75 16 26 H 0.04 1.42 7.97 -2.39 -0.02 1.40 16 27 H 0.07 3.55 5.94 -2.39 -0.01 3.54 16 28 H 0.03 1.53 8.01 -2.39 -0.02 1.51 16 29 H 0.26 14.20 8.31 -92.70 -0.77 13.42 16 30 H 0.34 12.77 5.34 -89.69 -0.48 12.29 16 31 H 0.09 2.52 8.06 -2.39 -0.02 2.50 16 32 H 0.06 2.51 7.72 -2.39 -0.02 2.49 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 38 H 0.06 1.82 6.98 -2.39 -0.02 1.80 16 Total: -1.00 -58.90 293.36 2.05 -56.84 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.54 Total: 23.50 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.38 Total: -30.21 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.29 Total: -82.13 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -1.59 Total: -14.15 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -58.90 2.05 -56.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384858868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.557 kcal (2) G-P(sol) polarization free energy of solvation -58.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds