Wall clock time and date at job start Sun Mar 29 2020 21:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47158 * 2 1 4 4 H 1.08998 * 109.47071 * 305.01729 * 3 2 1 5 5 C 1.50704 * 109.47317 * 185.01689 * 3 2 1 6 6 H 1.07994 * 120.00617 * 239.99907 * 5 3 2 7 7 C 1.37882 * 119.99523 * 59.99772 * 5 3 2 8 8 N 1.31513 * 120.00057 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99756 * 179.72718 * 7 5 3 10 10 H 1.48497 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47444 * 119.99992 * 9 7 5 12 12 H 1.48506 * 109.47112 * 240.00304 * 9 7 5 13 13 N 1.46898 * 109.47568 * 65.02041 * 3 2 1 14 14 C 1.46900 * 111.00395 * 207.57556 * 13 3 2 15 15 H 1.09004 * 110.45557 * 29.79222 * 14 13 3 16 16 C 1.54508 * 110.51154 * 267.04611 * 14 13 3 17 17 C 1.54477 * 104.06565 * 241.35322 * 16 14 13 18 18 H 1.08993 * 110.37138 * 94.84889 * 17 16 14 19 19 C 1.53000 * 110.46858 * 217.13901 * 17 16 14 20 20 O 1.44428 * 104.80006 * 336.01990 * 17 16 14 21 21 C 1.44422 * 105.27776 * 40.51077 * 20 17 16 22 22 H 1.08997 * 110.46579 * 78.36902 * 21 20 17 23 23 C 1.52996 * 110.37535 * 200.65987 * 21 20 17 24 24 H 1.08996 * 109.47296 * 53.97012 * 1 2 3 25 25 H 1.09002 * 109.47254 * 173.97692 * 1 2 3 26 26 H 1.09011 * 109.46990 * 293.97073 * 1 2 3 27 27 H 1.08992 * 109.46877 * 239.99672 * 2 1 3 28 28 H 1.09001 * 109.47254 * 119.99671 * 2 1 3 29 29 H 0.97004 * 120.00167 * 180.02562 * 8 7 5 30 30 H 1.00907 * 110.99813 * 331.52328 * 13 3 2 31 31 H 1.08999 * 110.50742 * 359.97438 * 16 14 13 32 32 H 1.08998 * 110.51371 * 122.70214 * 16 14 13 33 33 H 1.08994 * 109.47130 * 176.88396 * 19 17 16 34 34 H 1.08994 * 109.47053 * 296.89075 * 19 17 16 35 35 H 1.09006 * 109.46838 * 56.88569 * 19 17 16 36 36 H 1.09000 * 109.47393 * 175.38267 * 23 21 20 37 37 H 1.09005 * 109.46666 * 295.38252 * 23 21 20 38 38 H 1.08997 * 109.47260 * 55.37774 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6051 1.9815 -0.8416 5 6 3.5419 1.4443 -0.1243 6 1 4.1475 1.8888 0.6517 7 6 4.1429 0.8784 -1.2287 8 7 3.4055 0.3376 -2.1738 9 14 6.0042 0.8875 -1.3864 10 1 6.5981 1.5578 -0.2019 11 1 6.5010 -0.5096 -1.4660 12 1 6.3931 1.6221 -2.6170 13 7 1.6519 2.0991 1.2554 14 6 1.5136 3.5498 1.0699 15 1 1.2071 3.7758 0.0485 16 6 2.8380 4.2681 1.4122 17 6 2.4677 5.1978 2.5890 18 1 2.6900 4.7134 3.5397 19 6 3.2209 6.5251 2.4797 20 8 1.0460 5.4139 2.4551 21 6 0.4996 4.1306 2.0803 22 1 0.4186 3.4816 2.9522 23 6 -0.8691 4.3068 1.4197 24 1 -0.3633 0.6044 -0.8310 25 1 -0.3634 -1.0220 -0.1078 26 1 -0.3633 0.4176 0.9391 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8283 -0.0609 -2.9506 30 1 0.8023 1.6993 1.6250 31 1 3.5952 3.5467 1.7195 32 1 3.1877 4.8511 0.5602 33 1 2.9066 7.1885 3.2854 34 1 4.2926 6.3420 2.5568 35 1 2.9999 6.9902 1.5189 36 1 -1.2307 3.3400 1.0695 37 1 -1.5723 4.7169 2.1447 38 1 -0.7795 4.9891 0.5745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384858869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:38 Heat of formation + Delta-G solvation = -60.719732 kcal Electronic energy + Delta-G solvation = -16850.787923 eV Core-core repulsion = 14306.585711 eV Total energy + Delta-G solvation = -2544.202212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36108 -36.04853 -32.88196 -32.25108 -31.48518 -29.50322 -27.70883 -26.30643 -23.22703 -22.48798 -21.15663 -19.94791 -19.41334 -16.55432 -15.93491 -15.44781 -14.78827 -14.71055 -13.93945 -13.78973 -13.16026 -12.84739 -12.64077 -12.58523 -12.18125 -11.89695 -11.74169 -11.62017 -11.42652 -11.07706 -10.84915 -10.82204 -10.58707 -10.40912 -10.13518 -9.89798 -9.65705 -9.57135 -9.30893 -9.01536 -8.34644 -7.29506 -5.97017 -4.00341 3.30497 3.38769 3.43118 4.13550 4.44535 5.01144 5.13534 5.23180 5.32819 5.39094 5.49840 5.54549 5.64137 5.76356 5.88836 5.92839 6.11369 6.14052 6.15694 6.23585 6.28316 6.36367 6.38787 6.48765 6.62586 6.80129 6.83004 7.06315 7.16241 7.23420 7.50923 7.76320 7.92464 8.29493 8.38673 8.72553 9.07345 9.64332 11.08633 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.009542 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.436792 B = 2933.580137 C = 3942.747605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.676 5.676 14 C 0.072 3.928 15 H 0.052 0.948 16 C -0.132 4.132 17 C 0.069 3.931 18 H 0.064 0.936 19 C -0.143 4.143 20 O -0.378 6.378 21 C 0.065 3.935 22 H 0.070 0.930 23 C -0.145 4.145 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.100 0.900 28 H 0.041 0.959 29 H 0.258 0.742 30 H 0.318 0.682 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 6.286 6.548 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.039 4.039 15 H 0.070 0.930 16 C -0.171 4.171 17 C 0.011 3.989 18 H 0.082 0.918 19 C -0.201 4.201 20 O -0.297 6.297 21 C 0.007 3.993 22 H 0.088 0.912 23 C -0.202 4.202 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.982 6.450 6.632 10.071 hybrid contribution 0.288 -0.266 -0.767 0.861 sum -3.693 6.184 5.865 9.288 Atomic orbital electron populations 1.21888 0.99638 0.99771 0.99474 1.21798 0.91198 1.00480 1.03135 1.19268 0.95602 0.89863 0.84140 0.97885 1.21268 0.91098 1.35909 1.04382 0.91871 1.24968 0.98026 0.95770 0.95914 1.69879 1.34582 1.39555 1.09694 0.86524 0.85967 0.77576 0.77836 1.19786 1.21198 1.21299 1.60854 1.36685 1.00634 1.32759 1.22778 0.93580 0.90434 0.97089 0.92998 1.23005 0.99053 0.97950 0.97071 1.23006 0.81288 0.95985 0.98578 0.91824 1.21785 0.99628 0.96336 1.02313 1.89042 1.20281 1.30145 1.90235 1.23205 0.93935 0.85342 0.96830 0.91240 1.21798 0.95307 1.02308 1.00806 0.93896 0.94348 0.94664 0.88216 0.94033 0.93190 0.86380 0.88738 0.91570 0.92572 0.91312 0.92065 0.91373 0.92328 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.64 37.16 0.36 -2.47 16 2 C -0.13 -2.94 5.34 -26.73 -0.14 -3.08 16 3 C 0.22 5.29 2.03 -68.87 -0.14 5.15 16 4 H 0.00 0.10 7.36 -51.93 -0.38 -0.29 16 5 C -0.49 -13.07 8.34 -34.44 -0.29 -13.36 16 6 H 0.06 1.71 6.52 -52.49 -0.34 1.37 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.68 -13.91 6.06 -99.31 -0.60 -14.51 16 14 C 0.07 1.37 3.00 -66.14 -0.20 1.17 16 15 H 0.05 1.07 7.09 -51.93 -0.37 0.70 16 16 C -0.13 -2.43 6.00 -25.16 -0.15 -2.58 16 17 C 0.07 1.09 3.92 -25.96 -0.10 0.99 16 18 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 19 C -0.14 -1.89 9.53 37.16 0.35 -1.54 16 20 O -0.38 -6.40 11.04 -35.23 -0.39 -6.79 16 21 C 0.07 1.05 3.37 -25.96 -0.09 0.97 16 22 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 23 C -0.14 -2.03 9.52 37.16 0.35 -1.67 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.59 6.64 -51.92 -0.34 0.24 16 27 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.32 5.97 6.10 -39.29 -0.24 5.73 16 31 H 0.09 1.90 6.64 -51.93 -0.34 1.56 16 32 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -27.84 297.05 -7.56 -35.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.51 Total: 4.86 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.14 Total: -15.08 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.02 Total: -39.14 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.39 Total: -6.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.84 -7.56 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384858869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.321 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds