Wall clock time and date at job start Sun Mar 29 2020 21:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47158 * 2 1 4 4 H 1.08998 * 109.47071 * 305.01729 * 3 2 1 5 5 C 1.50704 * 109.47317 * 185.01689 * 3 2 1 6 6 H 1.07994 * 120.00617 * 239.99907 * 5 3 2 7 7 C 1.37882 * 119.99523 * 59.99772 * 5 3 2 8 8 N 1.31513 * 120.00057 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99756 * 179.72718 * 7 5 3 10 10 H 1.48497 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47444 * 119.99992 * 9 7 5 12 12 H 1.48506 * 109.47112 * 240.00304 * 9 7 5 13 13 N 1.46898 * 109.47568 * 65.02041 * 3 2 1 14 14 C 1.46900 * 111.00395 * 207.57556 * 13 3 2 15 15 H 1.09004 * 110.45557 * 29.79222 * 14 13 3 16 16 C 1.54508 * 110.51154 * 267.04611 * 14 13 3 17 17 C 1.54477 * 104.06565 * 241.35322 * 16 14 13 18 18 H 1.08993 * 110.37138 * 94.84889 * 17 16 14 19 19 C 1.53000 * 110.46858 * 217.13901 * 17 16 14 20 20 O 1.44428 * 104.80006 * 336.01990 * 17 16 14 21 21 C 1.44422 * 105.27776 * 40.51077 * 20 17 16 22 22 H 1.08997 * 110.46579 * 78.36902 * 21 20 17 23 23 C 1.52996 * 110.37535 * 200.65987 * 21 20 17 24 24 H 1.08996 * 109.47296 * 53.97012 * 1 2 3 25 25 H 1.09002 * 109.47254 * 173.97692 * 1 2 3 26 26 H 1.09011 * 109.46990 * 293.97073 * 1 2 3 27 27 H 1.08992 * 109.46877 * 239.99672 * 2 1 3 28 28 H 1.09001 * 109.47254 * 119.99671 * 2 1 3 29 29 H 0.97004 * 120.00167 * 180.02562 * 8 7 5 30 30 H 1.00907 * 110.99813 * 331.52328 * 13 3 2 31 31 H 1.08999 * 110.50742 * 359.97438 * 16 14 13 32 32 H 1.08998 * 110.51371 * 122.70214 * 16 14 13 33 33 H 1.08994 * 109.47130 * 176.88396 * 19 17 16 34 34 H 1.08994 * 109.47053 * 296.89075 * 19 17 16 35 35 H 1.09006 * 109.46838 * 56.88569 * 19 17 16 36 36 H 1.09000 * 109.47393 * 175.38267 * 23 21 20 37 37 H 1.09005 * 109.46666 * 295.38252 * 23 21 20 38 38 H 1.08997 * 109.47260 * 55.37774 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6051 1.9815 -0.8416 5 6 3.5419 1.4443 -0.1243 6 1 4.1475 1.8888 0.6517 7 6 4.1429 0.8784 -1.2287 8 7 3.4055 0.3376 -2.1738 9 14 6.0042 0.8875 -1.3864 10 1 6.5981 1.5578 -0.2019 11 1 6.5010 -0.5096 -1.4660 12 1 6.3931 1.6221 -2.6170 13 7 1.6519 2.0991 1.2554 14 6 1.5136 3.5498 1.0699 15 1 1.2071 3.7758 0.0485 16 6 2.8380 4.2681 1.4122 17 6 2.4677 5.1978 2.5890 18 1 2.6900 4.7134 3.5397 19 6 3.2209 6.5251 2.4797 20 8 1.0460 5.4139 2.4551 21 6 0.4996 4.1306 2.0803 22 1 0.4186 3.4816 2.9522 23 6 -0.8691 4.3068 1.4197 24 1 -0.3633 0.6044 -0.8310 25 1 -0.3634 -1.0220 -0.1078 26 1 -0.3633 0.4176 0.9391 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8283 -0.0609 -2.9506 30 1 0.8023 1.6993 1.6250 31 1 3.5952 3.5467 1.7195 32 1 3.1877 4.8511 0.5602 33 1 2.9066 7.1885 3.2854 34 1 4.2926 6.3420 2.5568 35 1 2.9999 6.9902 1.5189 36 1 -1.2307 3.3400 1.0695 37 1 -1.5723 4.7169 2.1447 38 1 -0.7795 4.9891 0.5745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384858869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:38 Heat of formation + Delta-G solvation = -78.306134 kcal Electronic energy + Delta-G solvation = -16851.550527 eV Core-core repulsion = 14306.585711 eV Total energy + Delta-G solvation = -2544.964815 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75068 -37.80086 -34.61375 -33.58252 -33.25608 -30.89499 -29.12701 -28.18637 -24.88841 -24.00142 -22.51901 -21.41093 -21.21943 -18.47311 -17.50176 -16.88666 -16.56388 -16.14168 -15.55851 -15.42499 -14.80034 -14.36896 -14.13165 -13.87445 -13.65411 -13.29094 -13.12802 -12.93497 -12.83684 -12.79451 -12.57610 -12.54338 -12.26167 -11.85755 -11.76132 -11.63685 -11.47181 -11.19225 -10.93673 -10.65883 -10.41228 -9.06478 -8.05361 -6.15570 1.39356 1.42140 1.52934 2.44142 2.86202 3.19927 3.54227 3.78931 3.87303 4.06160 4.18588 4.36219 4.38658 4.49109 4.56541 4.57920 4.67874 4.70000 4.74848 4.92122 5.00198 5.04953 5.10291 5.15113 5.18534 5.22812 5.30084 5.33142 5.38442 5.61191 5.77259 5.90792 5.95806 6.37708 6.52345 6.96085 6.99367 7.52773 8.98380 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.009542 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.436792 B = 2933.580137 C = 3942.747605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.672 5.672 14 C 0.068 3.932 15 H 0.029 0.971 16 C -0.133 4.133 17 C 0.072 3.928 18 H 0.073 0.927 19 C -0.140 4.140 20 O -0.384 6.384 21 C 0.071 3.929 22 H 0.080 0.920 23 C -0.142 4.142 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.258 0.742 30 H 0.330 0.670 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 6.857 7.931 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.118 3.882 4 H -0.014 1.014 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.305 5.305 14 C -0.043 4.043 15 H 0.047 0.953 16 C -0.172 4.172 17 C 0.015 3.985 18 H 0.090 0.910 19 C -0.197 4.197 20 O -0.303 6.303 21 C 0.013 3.987 22 H 0.097 0.903 23 C -0.199 4.199 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.388 7.027 8.031 11.539 hybrid contribution 0.411 -0.433 -1.191 1.332 sum -3.977 6.594 6.840 10.300 Atomic orbital electron populations 1.21758 0.96225 1.01155 1.00563 1.21626 0.94289 0.99020 1.01288 1.19018 0.94242 0.90515 0.84390 1.01413 1.21534 0.92615 1.35596 1.04192 0.92698 1.25669 1.01989 0.95655 0.95777 1.70009 1.36033 1.40164 1.10047 0.85608 0.81288 0.77585 0.77768 1.19283 1.20795 1.21121 1.60728 1.37519 1.01589 1.30712 1.22809 0.95067 0.89496 0.96913 0.95287 1.22949 0.98217 0.97991 0.98025 1.23061 0.81068 0.96870 0.97489 0.90955 1.21784 1.00073 0.95065 1.02752 1.89045 1.20748 1.30376 1.90172 1.23197 0.94026 0.85140 0.96296 0.90264 1.21801 0.94359 1.02774 1.00965 0.94553 0.92455 0.92141 0.91480 0.94345 0.93260 0.85061 0.90805 0.92463 0.90884 0.90038 0.92494 0.90674 0.90219 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.64 71.98 0.69 -4.38 16 2 C -0.12 -5.72 5.34 30.59 0.16 -5.56 16 3 C 0.23 11.17 2.03 44.17 0.09 11.26 16 4 H -0.03 -1.76 7.36 -2.39 -0.02 -1.78 16 5 C -0.50 -27.35 8.34 25.60 0.21 -27.14 16 6 H 0.05 3.03 6.52 -2.91 -0.02 3.01 16 7 C 0.01 0.37 5.29 84.66 0.45 0.82 16 8 N -0.92 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.67 -27.50 6.06 -468.12 -2.84 -30.34 16 14 C 0.07 2.57 3.00 45.93 0.14 2.70 16 15 H 0.03 1.23 7.09 -2.38 -0.02 1.22 16 16 C -0.13 -4.89 6.00 31.61 0.19 -4.71 16 17 C 0.07 2.18 3.92 31.10 0.12 2.30 16 18 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 19 C -0.14 -3.40 9.53 71.98 0.69 -2.72 16 20 O -0.38 -12.26 11.04 -148.98 -1.64 -13.90 16 21 C 0.07 2.19 3.37 31.10 0.10 2.30 16 22 H 0.08 2.31 7.93 -2.39 -0.02 2.29 16 23 C -0.14 -3.67 9.52 71.98 0.68 -2.99 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 1.87 6.64 -2.38 -0.02 1.86 16 27 H 0.07 3.57 5.95 -2.39 -0.01 3.56 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.33 11.92 6.10 -89.69 -0.55 11.37 16 31 H 0.07 3.01 6.64 -2.39 -0.02 2.99 16 32 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -59.93 297.05 1.79 -58.13 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.47 Total: 20.80 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.53 Total: -28.10 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.59 Total: -83.08 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.64 Total: -13.90 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -59.93 1.79 -58.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384858869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.172 kcal (2) G-P(sol) polarization free energy of solvation -59.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds