Wall clock time and date at job start Sun Mar 29 2020 21:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46906 * 2 1 4 4 H 1.09006 * 109.46710 * 305.76848 * 3 2 1 5 5 C 1.50697 * 109.46721 * 185.77119 * 3 2 1 6 6 H 1.07999 * 120.00351 * 239.99341 * 5 3 2 7 7 C 1.37881 * 119.99866 * 60.00082 * 5 3 2 8 8 N 1.31515 * 120.00395 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99791 * 180.26990 * 7 5 3 10 10 H 1.48500 * 109.46975 * 179.72492 * 9 7 5 11 11 H 1.48496 * 109.46972 * 299.72580 * 9 7 5 12 12 H 1.48504 * 109.46650 * 59.72641 * 9 7 5 13 13 N 1.46894 * 109.47308 * 65.77079 * 3 2 1 14 14 C 1.46895 * 111.00183 * 255.66437 * 13 3 2 15 15 H 1.09000 * 110.43530 * 42.12496 * 14 13 3 16 16 C 1.54814 * 110.48630 * 279.43773 * 14 13 3 17 17 C 1.54994 * 102.09396 * 220.44196 * 16 14 13 18 18 H 1.09001 * 110.61986 * 278.52412 * 17 16 14 19 19 C 1.52997 * 110.75419 * 155.58707 * 17 16 14 20 20 O 1.44387 * 103.49098 * 37.02442 * 17 16 14 21 21 C 1.43746 * 106.97225 * 319.93829 * 20 17 16 22 22 H 1.08994 * 109.88183 * 267.08777 * 21 20 17 23 23 C 1.52999 * 110.00285 * 146.00708 * 21 20 17 24 24 H 1.08994 * 109.47142 * 299.91223 * 1 2 3 25 25 H 1.09009 * 109.46843 * 59.90931 * 1 2 3 26 26 H 1.08997 * 109.47004 * 179.90534 * 1 2 3 27 27 H 1.08996 * 109.47388 * 239.99688 * 2 1 3 28 28 H 1.08992 * 109.46695 * 119.99362 * 2 1 3 29 29 H 0.97001 * 119.99873 * 179.97438 * 8 7 5 30 30 H 1.00907 * 110.99688 * 19.61435 * 13 3 2 31 31 H 1.09001 * 110.90470 * 338.64034 * 16 14 13 32 32 H 1.09002 * 110.90387 * 102.24676 * 16 14 13 33 33 H 1.08999 * 109.47058 * 304.40074 * 19 17 16 34 34 H 1.08997 * 109.47029 * 64.39638 * 19 17 16 35 35 H 1.09003 * 109.47082 * 184.39693 * 19 17 16 36 36 H 1.09004 * 109.47175 * 296.24255 * 23 21 20 37 37 H 1.08997 * 109.47347 * 56.23759 * 23 21 20 38 38 H 1.08997 * 109.47264 * 176.24228 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5947 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1429 6 1 4.1554 1.8861 0.6274 7 6 4.1275 0.8840 -1.2571 8 7 3.3785 0.3464 -2.1950 9 14 5.9875 0.8802 -1.4306 10 1 6.3644 0.2172 -2.7048 11 1 6.4872 2.2785 -1.4335 12 1 6.5893 0.1417 -0.2914 13 7 1.6674 2.0937 1.2629 14 6 0.5420 3.0172 1.0671 15 1 -0.2066 2.5715 0.4120 16 6 1.0404 4.3636 0.4876 17 6 0.1881 5.3913 1.2749 18 1 -0.8023 5.4892 0.8305 19 6 0.8897 6.7499 1.3281 20 8 0.0982 4.8135 2.5950 21 6 -0.0852 3.3983 2.4221 22 1 -1.1489 3.1602 2.4183 23 6 0.6137 2.6382 3.5510 24 1 -0.3633 0.5124 0.8907 25 1 -0.3633 0.5153 -0.8893 26 1 -0.3633 -1.0276 -0.0017 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.7917 -0.0479 -2.9791 30 1 1.4542 1.4095 1.9733 31 1 2.1025 4.5040 0.6884 32 1 0.8362 4.4264 -0.5812 33 1 1.8866 6.6277 1.7515 34 1 0.9704 7.1568 0.3202 35 1 0.3117 7.4331 1.9505 36 1 1.6882 2.8131 3.4960 37 1 0.2375 2.9883 4.5122 38 1 0.4136 1.5716 3.4492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384858870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:40 Heat of formation + Delta-G solvation = -53.262860 kcal Electronic energy + Delta-G solvation = -16941.342547 eV Core-core repulsion = 14397.463689 eV Total energy + Delta-G solvation = -2543.878858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49395 -36.17497 -32.99545 -32.22520 -31.30082 -29.13878 -28.13220 -26.12957 -23.49767 -22.64095 -20.97758 -19.85819 -19.37087 -16.66762 -15.87860 -15.46457 -14.98474 -14.69286 -14.32904 -13.70299 -13.19871 -12.88717 -12.58619 -12.31521 -12.01436 -11.82086 -11.70232 -11.54930 -11.25924 -11.14050 -10.83013 -10.67901 -10.57942 -10.46643 -10.31216 -9.99570 -9.75596 -9.71745 -9.25639 -9.05267 -8.31030 -7.19726 -5.95825 -3.98712 3.35380 3.39291 3.42993 4.10488 4.45341 4.99417 5.05726 5.22678 5.30554 5.33693 5.43270 5.61427 5.70086 5.81115 5.89040 5.94492 6.05128 6.09065 6.10325 6.19534 6.31646 6.36025 6.38630 6.42567 6.66077 6.74172 6.78326 6.95786 7.18380 7.29852 7.42856 7.75544 7.92793 8.32033 8.56940 8.62834 9.09073 9.66185 11.10068 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.008387 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.690888 B = 3337.712778 C = 3852.839843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.027 0.973 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.290 1.290 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.059 3.941 15 H 0.045 0.955 16 C -0.133 4.133 17 C 0.070 3.930 18 H 0.060 0.940 19 C -0.142 4.142 20 O -0.374 6.374 21 C 0.075 3.925 22 H 0.056 0.944 23 C -0.148 4.148 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.101 0.899 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.327 0.673 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 5.607 5.748 10.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.110 3.890 4 H 0.045 0.955 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.216 1.216 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.052 4.052 15 H 0.063 0.937 16 C -0.172 4.172 17 C 0.012 3.988 18 H 0.078 0.922 19 C -0.199 4.199 20 O -0.293 6.293 21 C 0.017 3.983 22 H 0.074 0.926 23 C -0.205 4.205 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.429 6.106 5.717 10.550 hybrid contribution 0.126 -0.900 -0.615 1.098 sum -6.303 5.205 5.102 9.636 Atomic orbital electron populations 1.21902 0.99599 0.99430 0.99673 1.22223 0.91426 1.01992 1.03030 1.19219 0.95470 0.88717 0.85632 0.95480 1.21200 0.91267 1.35886 1.04411 0.91993 1.24963 0.98026 0.95711 0.95953 1.69858 1.34720 1.39723 1.09587 0.86606 0.85851 0.78141 0.77033 1.21561 1.20394 1.20410 1.61078 1.35109 1.22626 1.11727 1.22837 0.93027 0.95064 0.94249 0.93703 1.23188 1.01854 0.93007 0.99124 1.23077 0.97784 0.94171 0.83766 0.92193 1.21729 1.01157 0.95078 1.01956 1.88828 1.94211 1.19313 1.26973 1.22771 0.97622 0.81933 0.95959 0.92621 1.21830 1.03088 0.98738 0.96857 0.94888 0.93787 0.94582 0.88115 0.94612 0.93099 0.85254 0.88931 0.91203 0.91651 0.91406 0.92497 0.89900 0.92948 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.93 37.16 0.33 -2.51 16 2 C -0.15 -3.38 5.08 -26.72 -0.14 -3.52 16 3 C 0.22 5.24 1.98 -68.87 -0.14 5.11 16 4 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 5 C -0.49 -13.29 8.84 -34.44 -0.30 -13.59 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.33 11.29 55.43 0.63 -24.70 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.67 -13.78 4.89 -99.35 -0.49 -14.26 16 14 C 0.06 1.07 2.47 -66.18 -0.16 0.91 16 15 H 0.05 0.83 6.58 -51.93 -0.34 0.49 16 16 C -0.13 -2.34 5.99 -24.72 -0.15 -2.49 16 17 C 0.07 1.05 3.97 -25.68 -0.10 0.95 16 18 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.14 -1.82 9.67 37.16 0.36 -1.46 16 20 O -0.37 -6.28 10.90 -35.23 -0.38 -6.67 16 21 C 0.08 1.21 4.05 -26.16 -0.11 1.10 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.15 -2.20 8.28 37.16 0.31 -1.89 16 24 H 0.03 0.57 6.55 -51.93 -0.34 0.23 16 25 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 28 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.30 5.22 -39.29 -0.21 6.09 16 31 H 0.09 1.82 7.98 -51.93 -0.41 1.40 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.88 7.13 -51.93 -0.37 0.51 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -27.91 294.16 -7.54 -35.45 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.52 Total: 5.36 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.19 Total: -16.04 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.14 Total: -38.97 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.38 Total: -6.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.91 -7.54 -35.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384858870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.810 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds