Wall clock time and date at job start Sun Mar 29 2020 21:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46906 * 2 1 4 4 H 1.09006 * 109.46710 * 305.76848 * 3 2 1 5 5 C 1.50697 * 109.46721 * 185.77119 * 3 2 1 6 6 H 1.07999 * 120.00351 * 239.99341 * 5 3 2 7 7 C 1.37881 * 119.99866 * 60.00082 * 5 3 2 8 8 N 1.31515 * 120.00395 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99791 * 180.26990 * 7 5 3 10 10 H 1.48500 * 109.46975 * 179.72492 * 9 7 5 11 11 H 1.48496 * 109.46972 * 299.72580 * 9 7 5 12 12 H 1.48504 * 109.46650 * 59.72641 * 9 7 5 13 13 N 1.46894 * 109.47308 * 65.77079 * 3 2 1 14 14 C 1.46895 * 111.00183 * 255.66437 * 13 3 2 15 15 H 1.09000 * 110.43530 * 42.12496 * 14 13 3 16 16 C 1.54814 * 110.48630 * 279.43773 * 14 13 3 17 17 C 1.54994 * 102.09396 * 220.44196 * 16 14 13 18 18 H 1.09001 * 110.61986 * 278.52412 * 17 16 14 19 19 C 1.52997 * 110.75419 * 155.58707 * 17 16 14 20 20 O 1.44387 * 103.49098 * 37.02442 * 17 16 14 21 21 C 1.43746 * 106.97225 * 319.93829 * 20 17 16 22 22 H 1.08994 * 109.88183 * 267.08777 * 21 20 17 23 23 C 1.52999 * 110.00285 * 146.00708 * 21 20 17 24 24 H 1.08994 * 109.47142 * 299.91223 * 1 2 3 25 25 H 1.09009 * 109.46843 * 59.90931 * 1 2 3 26 26 H 1.08997 * 109.47004 * 179.90534 * 1 2 3 27 27 H 1.08996 * 109.47388 * 239.99688 * 2 1 3 28 28 H 1.08992 * 109.46695 * 119.99362 * 2 1 3 29 29 H 0.97001 * 119.99873 * 179.97438 * 8 7 5 30 30 H 1.00907 * 110.99688 * 19.61435 * 13 3 2 31 31 H 1.09001 * 110.90470 * 338.64034 * 16 14 13 32 32 H 1.09002 * 110.90387 * 102.24676 * 16 14 13 33 33 H 1.08999 * 109.47058 * 304.40074 * 19 17 16 34 34 H 1.08997 * 109.47029 * 64.39638 * 19 17 16 35 35 H 1.09003 * 109.47082 * 184.39693 * 19 17 16 36 36 H 1.09004 * 109.47175 * 296.24255 * 23 21 20 37 37 H 1.08997 * 109.47347 * 56.23759 * 23 21 20 38 38 H 1.08997 * 109.47264 * 176.24228 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5947 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1429 6 1 4.1554 1.8861 0.6274 7 6 4.1275 0.8840 -1.2571 8 7 3.3785 0.3464 -2.1950 9 14 5.9875 0.8802 -1.4306 10 1 6.3644 0.2172 -2.7048 11 1 6.4872 2.2785 -1.4335 12 1 6.5893 0.1417 -0.2914 13 7 1.6674 2.0937 1.2629 14 6 0.5420 3.0172 1.0671 15 1 -0.2066 2.5715 0.4120 16 6 1.0404 4.3636 0.4876 17 6 0.1881 5.3913 1.2749 18 1 -0.8023 5.4892 0.8305 19 6 0.8897 6.7499 1.3281 20 8 0.0982 4.8135 2.5950 21 6 -0.0852 3.3983 2.4221 22 1 -1.1489 3.1602 2.4183 23 6 0.6137 2.6382 3.5510 24 1 -0.3633 0.5124 0.8907 25 1 -0.3633 0.5153 -0.8893 26 1 -0.3633 -1.0276 -0.0017 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.7917 -0.0479 -2.9791 30 1 1.4542 1.4095 1.9733 31 1 2.1025 4.5040 0.6884 32 1 0.8362 4.4264 -0.5812 33 1 1.8866 6.6277 1.7515 34 1 0.9704 7.1568 0.3202 35 1 0.3117 7.4331 1.9505 36 1 1.6882 2.8131 3.4960 37 1 0.2375 2.9883 4.5122 38 1 0.4136 1.5716 3.4492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384858870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:40 Heat of formation + Delta-G solvation = -70.401086 kcal Electronic energy + Delta-G solvation = -16942.085716 eV Core-core repulsion = 14397.463689 eV Total energy + Delta-G solvation = -2544.622027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84115 -37.87202 -34.73439 -33.55241 -33.02903 -30.62695 -29.46008 -28.00238 -24.99859 -24.28103 -22.27114 -21.58291 -20.85383 -18.48245 -17.48541 -16.81336 -16.63397 -16.39963 -15.75411 -15.29292 -14.81705 -14.43534 -14.00711 -13.73944 -13.45647 -13.19575 -13.09445 -12.97074 -12.78980 -12.74188 -12.56956 -12.48333 -12.05158 -11.91889 -11.77592 -11.69601 -11.58141 -11.39523 -10.98133 -10.54056 -10.39720 -8.89359 -8.05028 -6.15358 1.42843 1.43483 1.51310 2.45132 2.88068 3.20804 3.55798 3.68441 3.95158 4.07004 4.20038 4.41688 4.43686 4.47448 4.54513 4.57417 4.59594 4.68131 4.74330 4.88375 4.93116 5.04023 5.10705 5.13892 5.20502 5.26215 5.33648 5.36537 5.44808 5.57889 5.76096 5.89812 6.06989 6.37574 6.70878 6.91477 6.99002 7.53824 8.98172 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.008387 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.690888 B = 3337.712778 C = 3852.839843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.227 3.773 4 H -0.004 1.004 5 C -0.508 4.508 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.055 3.945 15 H 0.044 0.956 16 C -0.136 4.136 17 C 0.073 3.927 18 H 0.080 0.920 19 C -0.139 4.139 20 O -0.386 6.386 21 C 0.078 3.922 22 H 0.078 0.922 23 C -0.145 4.145 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.259 0.741 30 H 0.335 0.665 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 6.014 6.670 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.118 3.882 4 H 0.014 0.986 5 C -0.547 4.547 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.055 4.055 15 H 0.062 0.938 16 C -0.174 4.174 17 C 0.016 3.984 18 H 0.098 0.902 19 C -0.196 4.196 20 O -0.306 6.306 21 C 0.020 3.980 22 H 0.096 0.904 23 C -0.202 4.202 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.338 6.518 6.654 11.858 hybrid contribution 0.397 -1.003 -0.899 1.404 sum -6.941 5.515 5.756 10.570 Atomic orbital electron populations 1.21758 0.96455 1.00948 1.00266 1.22046 0.94244 1.00553 1.01354 1.18925 0.93762 0.89341 0.86150 0.98610 1.21503 0.93068 1.35847 1.04265 0.93269 1.25646 1.01961 0.95475 0.95752 1.69987 1.36123 1.40157 1.09836 0.85699 0.81190 0.78094 0.77109 1.21082 1.20196 1.19906 1.60938 1.36907 1.22734 1.10203 1.22910 0.92232 0.94480 0.95928 0.93839 1.23146 1.00725 0.94141 0.99398 1.23192 0.98362 0.94160 0.82681 0.90199 1.21741 1.00403 0.94232 1.03262 1.88820 1.94340 1.19617 1.27799 1.22831 0.98662 0.81817 0.94712 0.90409 1.21797 1.01554 0.99461 0.97389 0.92866 0.94548 0.92592 0.91420 0.94548 0.93192 0.84387 0.91687 0.91620 0.92956 0.89824 0.90844 0.92112 0.91235 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.93 71.98 0.64 -4.40 16 2 C -0.14 -6.56 5.08 30.60 0.16 -6.40 16 3 C 0.23 11.13 1.98 44.17 0.09 11.22 16 4 H 0.00 -0.22 7.44 -2.38 -0.02 -0.24 16 5 C -0.51 -28.18 8.84 25.60 0.23 -27.96 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.53 5.29 84.66 0.45 0.97 16 8 N -0.92 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 N -0.67 -27.60 4.89 -468.24 -2.29 -29.90 16 14 C 0.06 1.95 2.47 45.91 0.11 2.07 16 15 H 0.04 1.56 6.58 -2.39 -0.02 1.55 16 16 C -0.14 -4.75 5.99 31.90 0.19 -4.56 16 17 C 0.07 2.08 3.97 31.28 0.12 2.21 16 18 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 19 C -0.14 -3.33 9.67 71.98 0.70 -2.64 16 20 O -0.39 -12.18 10.90 -148.98 -1.62 -13.81 16 21 C 0.08 2.32 4.05 30.97 0.13 2.45 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 C -0.14 -4.02 8.28 71.98 0.60 -3.42 16 24 H 0.05 1.73 6.55 -2.39 -0.02 1.71 16 25 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 28 H 0.04 1.62 8.03 -2.39 -0.02 1.60 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.33 12.61 5.22 -89.69 -0.47 12.14 16 31 H 0.06 2.62 7.98 -2.39 -0.02 2.60 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.96 7.42 -2.38 -0.02 1.94 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.91 7.13 -2.39 -0.02 1.89 16 Total: -1.00 -59.98 294.16 2.31 -57.67 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.55 Total: 22.62 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.41 Total: -30.46 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.05 Total: -82.44 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.62 Total: -13.81 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -59.98 2.31 -57.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384858870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.727 kcal (2) G-P(sol) polarization free energy of solvation -59.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds