Wall clock time and date at job start Sun Mar 29 2020 22:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.35471 * 2 1 4 4 C 1.54598 * 110.30921 * 122.14987 * 2 1 3 5 5 C 1.54935 * 102.92387 * 140.87257 * 4 2 1 6 6 N 1.48536 * 103.22582 * 322.58105 * 5 4 2 7 7 C 1.46899 * 111.00157 * 159.71910 * 6 5 4 8 8 C 1.53006 * 109.46796 * 52.60701 * 7 6 5 9 9 O 1.42901 * 109.47006 * 64.99753 * 8 7 6 10 10 C 1.42904 * 113.99816 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46771 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00512 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99971 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99876 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47044 * 89.99931 * 15 13 11 17 17 H 1.48498 * 109.46924 * 209.99607 * 15 13 11 18 18 H 1.48499 * 109.47074 * 329.99888 * 15 13 11 19 19 C 1.47907 * 105.81829 * 39.21169 * 6 5 4 20 20 H 1.08993 * 110.08280 * 94.11498 * 19 6 5 21 21 C 1.53006 * 109.91384 * 215.31541 * 19 6 5 22 22 H 1.08994 * 109.47770 * 182.13635 * 1 2 3 23 23 H 1.09005 * 109.47009 * 302.14145 * 1 2 3 24 24 H 1.09005 * 109.47397 * 62.13429 * 1 2 3 25 25 H 1.09006 * 110.72038 * 259.22757 * 4 2 1 26 26 H 1.08995 * 110.72445 * 22.33113 * 4 2 1 27 27 H 1.09001 * 110.67274 * 81.01689 * 5 4 2 28 28 H 1.09001 * 110.66629 * 204.15448 * 5 4 2 29 29 H 1.09003 * 109.47283 * 172.60274 * 7 6 5 30 30 H 1.08996 * 109.47682 * 292.60813 * 7 6 5 31 31 H 1.09002 * 109.46959 * 185.00107 * 8 7 6 32 32 H 1.09001 * 109.46921 * 304.99627 * 8 7 6 33 33 H 1.09000 * 109.47325 * 300.00057 * 10 9 8 34 34 H 1.08997 * 109.46953 * 60.00379 * 10 9 8 35 35 H 0.96996 * 119.99691 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47002 * 177.58644 * 21 19 6 37 37 H 1.08993 * 109.46955 * 297.59081 * 21 19 6 38 38 H 1.09000 * 109.47050 * 57.58910 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0665 -0.7715 1.2275 5 6 3.2854 -1.5349 0.6513 6 7 2.8312 -1.9237 -0.7084 7 6 3.9749 -2.2262 -1.5791 8 6 4.8798 -3.2525 -0.8942 9 8 4.1760 -4.4879 -0.7515 10 6 4.9362 -5.5203 -0.1202 11 6 4.1006 -6.7706 -0.0219 12 1 3.0904 -6.7765 -0.4036 13 6 4.6264 -7.9075 0.5545 14 7 3.8974 -8.9988 0.6399 15 14 6.3740 -7.8976 1.2142 16 1 6.3628 -7.4803 2.6393 17 1 6.9531 -9.2604 1.1020 18 1 7.1953 -6.9442 0.4257 19 6 2.0644 -0.7683 -1.2230 20 1 2.7133 -0.1215 -1.8133 21 6 0.8968 -1.2585 -2.0817 22 1 -0.3634 -1.0269 0.0383 23 1 -0.3633 0.5468 0.8702 24 1 -0.3634 0.4803 -0.9085 25 1 2.3791 -0.0808 2.0108 26 1 1.3161 -1.4661 1.6048 27 1 4.1564 -0.8820 0.5939 28 1 3.5045 -2.4185 1.2509 29 1 3.6146 -2.6329 -2.5241 30 1 4.5393 -1.3131 -1.7681 31 1 5.7726 -3.4106 -1.4992 32 1 5.1685 -2.8829 0.0898 33 1 5.8299 -5.7255 -0.7095 34 1 5.2263 -5.1981 0.8798 35 1 4.2672 -9.7984 1.0458 36 1 0.3119 -0.4038 -2.4217 37 1 1.2830 -1.8009 -2.9445 38 1 0.2635 -1.9199 -1.4904 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385295143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:00 Heat of formation + Delta-G solvation = -47.166861 kcal Electronic energy + Delta-G solvation = -16301.063799 eV Core-core repulsion = 13757.449284 eV Total energy + Delta-G solvation = -2543.614515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52364 -36.81760 -33.79288 -32.49196 -31.34024 -29.35506 -27.58256 -25.96354 -24.70880 -22.50314 -21.78793 -20.33717 -18.97920 -16.84707 -16.31383 -15.73323 -15.35166 -14.55932 -14.47293 -14.22267 -13.82890 -13.64082 -13.02843 -12.73356 -12.38326 -12.31118 -11.89931 -11.74781 -11.42542 -11.33196 -11.12678 -10.88064 -10.78545 -10.62009 -10.48507 -10.41948 -10.25741 -9.82196 -9.11937 -8.78194 -8.40225 -8.13468 -6.06822 -4.05027 3.26977 3.33781 3.35434 4.08643 4.39139 4.55212 4.67269 4.77793 4.86672 5.24339 5.26838 5.37814 5.40539 5.41733 5.47696 5.58518 5.70787 5.71512 5.80335 5.83476 5.88278 5.92863 6.01516 6.10568 6.15472 6.22124 6.27362 6.34143 6.49470 6.64828 7.04651 7.15540 7.30282 7.65312 8.10305 8.73778 9.06894 9.52987 11.06414 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.005577 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.514995 B = 5019.082571 C = 5088.456503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.119 4.119 5 C 0.035 3.965 6 N -0.496 5.496 7 C 0.053 3.947 8 C 0.059 3.941 9 O -0.364 6.364 10 C 0.167 3.833 11 C -0.514 4.514 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.063 3.937 20 H 0.045 0.955 21 C -0.136 4.136 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.000 1.000 34 H -0.004 1.004 35 H 0.266 0.734 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 19.410 -1.638 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.087 0.913 4 C -0.157 4.157 5 C -0.093 4.093 6 N -0.221 5.221 7 C -0.075 4.075 8 C -0.019 4.019 9 O -0.282 6.282 10 C 0.092 3.908 11 C -0.552 4.552 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.045 4.045 20 H 0.063 0.937 21 C -0.193 4.193 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.346 18.699 -1.640 18.917 hybrid contribution 1.894 0.615 0.418 2.035 sum -0.453 19.315 -1.221 19.359 Atomic orbital electron populations 1.21932 0.94531 1.02447 1.01062 1.22005 0.96513 0.98427 0.94855 0.91317 1.22578 0.97963 0.98580 0.96599 1.23220 0.95778 0.99075 0.91209 1.64732 1.20786 1.34873 1.01659 1.22303 0.91316 0.96340 0.97516 1.22394 0.93956 0.87355 0.98238 1.88030 1.40223 1.19120 1.80865 1.20586 0.92328 0.87051 0.90832 1.20902 1.02048 0.92946 1.39332 0.89884 1.24767 0.97569 0.95130 0.95526 1.69880 1.36808 1.02032 1.44807 0.86864 0.85368 0.77711 0.79860 1.19991 1.20823 1.19203 1.22453 0.95768 0.90946 0.95360 0.93713 1.21841 0.97530 1.00624 0.99324 0.91609 0.93222 0.92546 0.91552 0.90380 0.94443 0.89360 0.89891 0.94342 0.94204 0.94391 0.98250 0.98680 0.92448 0.92751 0.92988 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.92 37.15 0.29 -1.09 16 2 C -0.10 -1.07 3.59 -89.26 -0.32 -1.39 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.42 6.61 -24.87 -0.16 -1.58 16 5 C 0.03 0.50 5.09 -1.90 -0.01 0.49 16 6 N -0.50 -7.72 4.98 -222.56 -1.11 -8.83 16 7 C 0.05 0.82 5.41 -3.82 -0.02 0.80 16 8 C 0.06 1.07 5.76 37.16 0.21 1.28 16 9 O -0.36 -8.77 10.27 -35.23 -0.36 -9.14 16 10 C 0.17 4.38 4.76 36.01 0.17 4.55 16 11 C -0.51 -15.67 9.99 -34.44 -0.34 -16.02 16 12 H 0.08 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 15 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C 0.06 0.79 3.08 -66.63 -0.21 0.59 16 20 H 0.04 0.53 7.58 -51.93 -0.39 0.14 16 21 C -0.14 -1.63 8.36 37.16 0.31 -1.32 16 22 H 0.06 0.71 6.76 -51.93 -0.35 0.36 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.49 6.73 -51.93 -0.35 0.14 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.00 7.84 -51.93 -0.41 0.59 16 27 H 0.04 0.48 8.01 -51.93 -0.42 0.07 16 28 H 0.09 1.45 7.56 -51.93 -0.39 1.05 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.50 7.82 -51.93 -0.41 0.09 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.66 6.52 -51.93 -0.34 0.32 16 33 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 34 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 35 H 0.27 7.70 8.31 -40.82 -0.34 7.37 16 36 H 0.05 0.53 6.79 -51.93 -0.35 0.18 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -32.19 295.76 -7.73 -39.92 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.65 Total: -4.51 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.17 Total: -11.65 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.33 Total: -36.18 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.36 Total: -9.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.19 -7.73 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385295143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.246 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds