Wall clock time and date at job start Sun Mar 29 2020 22:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.35471 * 2 1 4 4 C 1.54598 * 110.30921 * 122.14987 * 2 1 3 5 5 C 1.54935 * 102.92387 * 140.87257 * 4 2 1 6 6 N 1.48536 * 103.22582 * 322.58105 * 5 4 2 7 7 C 1.46899 * 111.00157 * 159.71910 * 6 5 4 8 8 C 1.53006 * 109.46796 * 52.60701 * 7 6 5 9 9 O 1.42901 * 109.47006 * 64.99753 * 8 7 6 10 10 C 1.42904 * 113.99816 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46771 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00512 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99971 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99876 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47044 * 89.99931 * 15 13 11 17 17 H 1.48498 * 109.46924 * 209.99607 * 15 13 11 18 18 H 1.48499 * 109.47074 * 329.99888 * 15 13 11 19 19 C 1.47907 * 105.81829 * 39.21169 * 6 5 4 20 20 H 1.08993 * 110.08280 * 94.11498 * 19 6 5 21 21 C 1.53006 * 109.91384 * 215.31541 * 19 6 5 22 22 H 1.08994 * 109.47770 * 182.13635 * 1 2 3 23 23 H 1.09005 * 109.47009 * 302.14145 * 1 2 3 24 24 H 1.09005 * 109.47397 * 62.13429 * 1 2 3 25 25 H 1.09006 * 110.72038 * 259.22757 * 4 2 1 26 26 H 1.08995 * 110.72445 * 22.33113 * 4 2 1 27 27 H 1.09001 * 110.67274 * 81.01689 * 5 4 2 28 28 H 1.09001 * 110.66629 * 204.15448 * 5 4 2 29 29 H 1.09003 * 109.47283 * 172.60274 * 7 6 5 30 30 H 1.08996 * 109.47682 * 292.60813 * 7 6 5 31 31 H 1.09002 * 109.46959 * 185.00107 * 8 7 6 32 32 H 1.09001 * 109.46921 * 304.99627 * 8 7 6 33 33 H 1.09000 * 109.47325 * 300.00057 * 10 9 8 34 34 H 1.08997 * 109.46953 * 60.00379 * 10 9 8 35 35 H 0.96996 * 119.99691 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47002 * 177.58644 * 21 19 6 37 37 H 1.08993 * 109.46955 * 297.59081 * 21 19 6 38 38 H 1.09000 * 109.47050 * 57.58910 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0665 -0.7715 1.2275 5 6 3.2854 -1.5349 0.6513 6 7 2.8312 -1.9237 -0.7084 7 6 3.9749 -2.2262 -1.5791 8 6 4.8798 -3.2525 -0.8942 9 8 4.1760 -4.4879 -0.7515 10 6 4.9362 -5.5203 -0.1202 11 6 4.1006 -6.7706 -0.0219 12 1 3.0904 -6.7765 -0.4036 13 6 4.6264 -7.9075 0.5545 14 7 3.8974 -8.9988 0.6399 15 14 6.3740 -7.8976 1.2142 16 1 6.3628 -7.4803 2.6393 17 1 6.9531 -9.2604 1.1020 18 1 7.1953 -6.9442 0.4257 19 6 2.0644 -0.7683 -1.2230 20 1 2.7133 -0.1215 -1.8133 21 6 0.8968 -1.2585 -2.0817 22 1 -0.3634 -1.0269 0.0383 23 1 -0.3633 0.5468 0.8702 24 1 -0.3634 0.4803 -0.9085 25 1 2.3791 -0.0808 2.0108 26 1 1.3161 -1.4661 1.6048 27 1 4.1564 -0.8820 0.5939 28 1 3.5045 -2.4185 1.2509 29 1 3.6146 -2.6329 -2.5241 30 1 4.5393 -1.3131 -1.7681 31 1 5.7726 -3.4106 -1.4992 32 1 5.1685 -2.8829 0.0898 33 1 5.8299 -5.7255 -0.7095 34 1 5.2263 -5.1981 0.8798 35 1 4.2672 -9.7984 1.0458 36 1 0.3119 -0.4038 -2.4217 37 1 1.2830 -1.8009 -2.9445 38 1 0.2635 -1.9199 -1.4904 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385295143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:59 Heat of formation + Delta-G solvation = -69.945265 kcal Electronic energy + Delta-G solvation = -16302.051545 eV Core-core repulsion = 13757.449284 eV Total energy + Delta-G solvation = -2544.602261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57516 -38.52748 -35.18773 -34.51902 -32.33816 -30.87777 -29.34306 -27.13319 -25.64442 -23.98551 -23.66964 -21.50857 -19.91474 -19.04395 -17.49579 -17.43910 -16.66995 -16.35711 -15.85463 -15.47961 -14.89156 -14.79826 -14.68316 -14.41270 -13.73517 -13.50322 -13.22670 -12.99926 -12.92084 -12.65593 -12.42821 -12.25674 -12.17373 -11.86985 -11.72394 -11.57849 -11.38941 -11.32705 -11.30154 -10.92216 -10.31544 -9.22367 -8.37340 -6.45159 1.31778 1.35460 1.46360 2.28950 2.94848 2.97554 3.15525 3.63455 3.77346 3.97187 4.19647 4.24280 4.28344 4.41321 4.49124 4.51200 4.53811 4.60288 4.64898 4.78419 4.84447 4.88835 4.93959 4.97035 5.01015 5.06178 5.17646 5.26450 5.28644 5.40978 5.43881 5.57443 5.93634 6.10867 6.23335 6.59165 6.79249 7.19472 8.80184 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.005577 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.514995 B = 5019.082571 C = 5088.456503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.091 0.909 4 C -0.117 4.117 5 C 0.034 3.966 6 N -0.530 5.530 7 C 0.059 3.941 8 C 0.050 3.950 9 O -0.393 6.393 10 C 0.180 3.820 11 C -0.544 4.544 12 H 0.026 0.974 13 C 0.013 3.987 14 N -0.943 5.943 15 Si 0.957 3.043 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.246 1.246 19 C 0.061 3.939 20 H 0.059 0.941 21 C -0.133 4.133 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.007 0.993 35 H 0.273 0.727 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 21.828 -1.237 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.109 0.891 4 C -0.155 4.155 5 C -0.094 4.094 6 N -0.256 5.256 7 C -0.069 4.069 8 C -0.027 4.027 9 O -0.313 6.313 10 C 0.104 3.896 11 C -0.582 4.582 12 H 0.045 0.955 13 C -0.185 4.185 14 N -0.582 5.582 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.170 1.170 19 C -0.047 4.047 20 H 0.077 0.923 21 C -0.191 4.191 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.439 21.142 -1.251 21.184 hybrid contribution 1.172 -0.132 0.243 1.204 sum 0.733 21.010 -1.008 21.047 Atomic orbital electron populations 1.21902 0.93865 1.01594 1.02362 1.22024 0.97058 0.98974 0.93171 0.89055 1.22568 0.96625 0.98560 0.97706 1.23176 0.97494 0.98309 0.90404 1.64671 1.21367 1.37132 1.02415 1.22250 0.91413 0.96675 0.96596 1.22745 0.94911 0.85449 0.99571 1.87984 1.41599 1.20916 1.80774 1.20283 0.91589 0.86035 0.91700 1.21154 1.00620 0.96039 1.40372 0.95517 1.25861 1.03428 0.94044 0.95180 1.70040 1.39643 1.03064 1.45497 0.85584 0.78097 0.78738 0.79742 1.18373 1.19654 1.16969 1.22554 0.95608 0.90313 0.96247 0.92256 1.21838 0.97548 1.01160 0.98513 0.93557 0.91986 0.91186 0.89286 0.92183 0.92605 0.92550 0.91025 0.90954 0.92570 0.93298 0.97209 0.97555 0.91792 0.90129 0.94273 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.92 71.98 0.57 -1.88 16 2 C -0.09 -1.80 3.59 -9.91 -0.04 -1.83 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -2.61 6.61 31.80 0.21 -2.40 16 5 C 0.03 0.93 5.09 86.65 0.44 1.37 16 6 N -0.53 -16.17 4.98 -858.05 -4.27 -20.44 16 7 C 0.06 1.73 5.41 86.31 0.47 2.20 16 8 C 0.05 1.77 5.76 71.98 0.41 2.19 16 9 O -0.39 -19.29 10.27 -148.98 -1.53 -20.82 16 10 C 0.18 9.40 4.76 71.24 0.34 9.73 16 11 C -0.54 -34.41 9.99 25.60 0.26 -34.15 16 12 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 13 C 0.01 0.77 5.47 84.66 0.46 1.23 16 14 N -0.94 -60.72 13.96 21.45 0.30 -60.42 16 15 Si 0.96 44.31 27.47 68.60 1.88 46.19 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 19 C 0.06 1.41 3.08 45.06 0.14 1.55 16 20 H 0.06 1.22 7.58 -2.39 -0.02 1.20 16 21 C -0.13 -3.10 8.36 71.98 0.60 -2.49 16 22 H 0.05 0.99 6.76 -2.39 -0.02 0.97 16 23 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.07 1.03 6.73 -2.38 -0.02 1.01 16 25 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.06 1.54 7.84 -2.39 -0.02 1.52 16 27 H 0.06 1.30 8.01 -2.39 -0.02 1.29 16 28 H 0.06 1.88 7.56 -2.39 -0.02 1.86 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 1.65 7.82 -2.39 -0.02 1.63 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.61 6.52 -2.39 -0.02 1.60 16 33 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 34 H 0.01 0.33 7.57 -2.39 -0.02 0.32 16 35 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.08 1.41 6.79 -2.39 -0.02 1.40 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.32 6.72 -2.39 -0.02 1.30 16 Total: -1.00 -72.41 295.76 1.19 -71.21 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.95 Total: 8.77 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.87 Total: -24.49 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -3.97 Total: -80.86 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.53 Total: -20.82 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -72.41 1.19 -71.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385295143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.269 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds