Wall clock time and date at job start Sun Mar 29 2020 22:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.91031 * 2 1 4 4 C 1.53999 * 110.08237 * 238.79440 * 2 1 3 5 5 H 1.09000 * 110.31090 * 0.79184 * 4 2 1 6 6 C 1.52997 * 110.30832 * 122.86405 * 4 2 1 7 7 C 1.54604 * 105.14048 * 241.78155 * 4 2 1 8 8 C 1.54940 * 102.91923 * 21.95437 * 7 4 2 9 9 N 1.47899 * 109.91865 * 121.10843 * 2 1 3 10 10 C 1.46906 * 110.99831 * 333.70352 * 9 2 1 11 11 C 1.53000 * 109.47072 * 170.00251 * 10 9 2 12 12 O 1.42894 * 109.47226 * 65.00091 * 11 10 9 13 13 C 1.42903 * 113.99852 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47074 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00170 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47113 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46907 * 119.99799 * 18 16 14 21 21 H 1.48497 * 109.47351 * 239.99706 * 18 16 14 22 22 H 1.08993 * 109.47046 * 300.34677 * 1 2 3 23 23 H 1.08994 * 109.47087 * 60.35171 * 1 2 3 24 24 H 1.09003 * 109.46971 * 180.34387 * 1 2 3 25 25 H 1.09003 * 109.46957 * 60.00537 * 6 4 2 26 26 H 1.09004 * 109.47113 * 179.97438 * 6 4 2 27 27 H 1.08997 * 109.47398 * 299.99853 * 6 4 2 28 28 H 1.09002 * 110.72257 * 140.31398 * 7 4 2 29 29 H 1.08997 * 110.72010 * 263.41904 * 7 4 2 30 30 H 1.09002 * 110.66363 * 204.14979 * 8 7 4 31 31 H 1.09004 * 110.66357 * 81.02699 * 8 7 4 32 32 H 1.08993 * 109.47164 * 290.00105 * 10 9 2 33 33 H 1.08996 * 109.46920 * 50.00139 * 10 9 2 34 34 H 1.09003 * 109.47287 * 185.00504 * 11 10 9 35 35 H 1.09000 * 109.47065 * 305.00093 * 11 10 9 36 36 H 1.09003 * 109.46907 * 299.99792 * 13 12 11 37 37 H 1.08994 * 109.47647 * 60.00258 * 13 12 11 38 38 H 0.96997 * 120.00610 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0588 -0.7494 -1.2371 5 1 1.2287 -1.1032 -1.8485 6 6 2.9724 0.1616 -2.0594 7 6 2.8602 -1.9451 -0.6729 8 6 2.2707 -2.1169 0.7496 9 7 2.0339 -0.7184 1.1905 10 6 1.0572 -0.6703 2.2869 11 6 1.4948 -1.6224 3.4018 12 8 2.7223 -1.1600 3.9686 13 6 3.2213 -1.9833 5.0247 14 6 4.5116 -1.4046 5.5457 15 1 4.9108 -0.4990 5.1133 16 6 5.1824 -2.0313 6.5744 17 7 4.6961 -3.1337 7.1013 18 14 6.7821 -1.3144 7.2198 19 1 7.1114 -0.0792 6.4643 20 1 6.6324 -0.9877 8.6607 21 1 7.8739 -2.3062 7.0480 22 1 -0.3633 0.5192 0.8868 23 1 -0.3633 0.5083 -0.8931 24 1 -0.3633 -1.0277 0.0062 25 1 3.8169 0.4776 -1.4470 26 1 3.3389 -0.3819 -2.9303 27 1 2.4127 1.0378 -2.3866 28 1 2.6904 -2.8400 -1.2715 29 1 3.9234 -1.7094 -0.6270 30 1 2.9872 -2.6111 1.4058 31 1 1.3338 -2.6727 0.7132 32 1 0.9999 0.3453 2.6781 33 1 0.0782 -0.9721 1.9147 34 1 0.7268 -1.6541 4.1747 35 1 1.6380 -2.6217 2.9908 36 1 2.4893 -2.0228 5.8314 37 1 3.4006 -2.9899 4.6470 38 1 5.1678 -3.5745 7.8253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385295145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:01 Heat of formation + Delta-G solvation = -51.600534 kcal Electronic energy + Delta-G solvation = -16264.236277 eV Core-core repulsion = 13720.429503 eV Total energy + Delta-G solvation = -2543.806774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64268 -36.55907 -33.62229 -32.53228 -31.18772 -29.28368 -27.26458 -26.35548 -23.88192 -22.70377 -22.17903 -20.12658 -19.26286 -16.36610 -16.20315 -15.66707 -15.35242 -14.62925 -14.21856 -14.14130 -13.48312 -13.28583 -13.18748 -12.87177 -12.75375 -12.06679 -11.79427 -11.63370 -11.54088 -11.22656 -11.00598 -10.79969 -10.72390 -10.65070 -10.47823 -10.44535 -10.30538 -9.89201 -9.01455 -8.74478 -8.09116 -8.01368 -6.05346 -4.06022 3.33152 3.39385 3.46911 4.18531 4.40905 4.57819 4.76376 4.81408 5.00719 5.26539 5.31248 5.31427 5.37626 5.46365 5.46570 5.52657 5.67582 5.74197 5.76050 5.87877 5.91817 6.05471 6.08039 6.11418 6.12645 6.24514 6.29193 6.39989 6.42204 7.16320 7.21052 7.35609 7.49572 7.87207 8.23163 8.68311 9.09440 9.58823 11.06461 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037434 B = 0.005452 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.796655 B = 5134.182344 C = 5451.025368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.061 3.939 3 H 0.085 0.915 4 C -0.098 4.098 5 H 0.071 0.929 6 C -0.141 4.141 7 C -0.120 4.120 8 C 0.035 3.965 9 N -0.495 5.495 10 C 0.046 3.954 11 C 0.062 3.938 12 O -0.380 6.380 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 3.389 -16.070 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.047 4.047 3 H 0.103 0.897 4 C -0.117 4.117 5 H 0.089 0.911 6 C -0.198 4.198 7 C -0.158 4.158 8 C -0.093 4.093 9 N -0.218 5.218 10 C -0.082 4.082 11 C -0.016 4.016 12 O -0.299 6.299 13 C 0.119 3.881 14 C -0.547 4.547 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.319 3.673 -15.773 17.772 hybrid contribution -0.202 -0.450 0.344 0.602 sum -7.520 3.222 -15.429 17.464 Atomic orbital electron populations 1.22440 0.97274 1.01641 1.02116 1.22601 0.92688 0.99271 0.90150 0.89655 1.22058 0.98024 0.95877 0.95790 0.91096 1.21820 0.99652 0.98869 0.99490 1.22577 1.00566 0.97162 0.95454 1.23226 0.99497 0.90711 0.95848 1.64962 1.41276 1.10744 1.04860 1.22453 0.92993 1.01270 0.91501 1.22340 0.89166 0.95949 0.94167 1.87965 1.36327 1.52425 1.53190 1.20182 0.94001 0.89981 0.83961 1.21115 1.05863 1.10690 1.17029 0.91452 1.24947 0.98356 0.94982 0.96303 1.69975 1.39653 1.18338 1.26098 0.86300 0.82631 0.79167 0.78526 1.19444 1.20918 1.20893 0.91831 0.92409 0.92787 0.91959 0.92889 0.92936 0.91572 0.90471 0.89350 0.94456 0.90132 0.93377 0.94433 0.94609 0.98037 0.97984 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 7.62 37.16 0.28 -1.59 16 2 C 0.06 0.77 3.42 -66.64 -0.23 0.55 16 3 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 4 C -0.10 -1.08 3.23 -89.26 -0.29 -1.37 16 5 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 6 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 7 C -0.12 -1.46 6.61 -24.86 -0.16 -1.62 16 8 C 0.03 0.52 5.07 -1.90 -0.01 0.51 16 9 N -0.49 -7.89 5.33 -222.57 -1.19 -9.08 16 10 C 0.05 0.73 4.38 -3.82 -0.02 0.71 16 11 C 0.06 1.20 5.76 37.16 0.21 1.41 16 12 O -0.38 -9.56 10.27 -35.23 -0.36 -9.92 16 13 C 0.19 5.47 5.69 36.01 0.20 5.68 16 14 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 15 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 18 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.57 7.64 -51.93 -0.40 0.18 16 25 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.00 7.84 -51.93 -0.41 0.59 16 30 H 0.09 1.52 7.56 -51.93 -0.39 1.13 16 31 H 0.04 0.51 8.01 -51.93 -0.42 0.09 16 32 H 0.08 1.32 8.12 -51.93 -0.42 0.89 16 33 H 0.05 0.65 5.66 -51.93 -0.29 0.35 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.68 6.52 -51.93 -0.34 0.34 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -31.83 299.99 -8.15 -39.98 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.74 Total: -5.06 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -0.10 Total: -10.99 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.45 Total: -35.83 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.36 Total: -9.92 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.83 -8.15 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385295145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.619 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds