Wall clock time and date at job start Sun Mar 29 2020 22:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.91031 * 2 1 4 4 C 1.53999 * 110.08237 * 238.79440 * 2 1 3 5 5 H 1.09000 * 110.31090 * 0.79184 * 4 2 1 6 6 C 1.52997 * 110.30832 * 122.86405 * 4 2 1 7 7 C 1.54604 * 105.14048 * 241.78155 * 4 2 1 8 8 C 1.54940 * 102.91923 * 21.95437 * 7 4 2 9 9 N 1.47899 * 109.91865 * 121.10843 * 2 1 3 10 10 C 1.46906 * 110.99831 * 333.70352 * 9 2 1 11 11 C 1.53000 * 109.47072 * 170.00251 * 10 9 2 12 12 O 1.42894 * 109.47226 * 65.00091 * 11 10 9 13 13 C 1.42903 * 113.99852 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47074 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00170 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47113 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46907 * 119.99799 * 18 16 14 21 21 H 1.48497 * 109.47351 * 239.99706 * 18 16 14 22 22 H 1.08993 * 109.47046 * 300.34677 * 1 2 3 23 23 H 1.08994 * 109.47087 * 60.35171 * 1 2 3 24 24 H 1.09003 * 109.46971 * 180.34387 * 1 2 3 25 25 H 1.09003 * 109.46957 * 60.00537 * 6 4 2 26 26 H 1.09004 * 109.47113 * 179.97438 * 6 4 2 27 27 H 1.08997 * 109.47398 * 299.99853 * 6 4 2 28 28 H 1.09002 * 110.72257 * 140.31398 * 7 4 2 29 29 H 1.08997 * 110.72010 * 263.41904 * 7 4 2 30 30 H 1.09002 * 110.66363 * 204.14979 * 8 7 4 31 31 H 1.09004 * 110.66357 * 81.02699 * 8 7 4 32 32 H 1.08993 * 109.47164 * 290.00105 * 10 9 2 33 33 H 1.08996 * 109.46920 * 50.00139 * 10 9 2 34 34 H 1.09003 * 109.47287 * 185.00504 * 11 10 9 35 35 H 1.09000 * 109.47065 * 305.00093 * 11 10 9 36 36 H 1.09003 * 109.46907 * 299.99792 * 13 12 11 37 37 H 1.08994 * 109.47647 * 60.00258 * 13 12 11 38 38 H 0.96997 * 120.00610 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0588 -0.7494 -1.2371 5 1 1.2287 -1.1032 -1.8485 6 6 2.9724 0.1616 -2.0594 7 6 2.8602 -1.9451 -0.6729 8 6 2.2707 -2.1169 0.7496 9 7 2.0339 -0.7184 1.1905 10 6 1.0572 -0.6703 2.2869 11 6 1.4948 -1.6224 3.4018 12 8 2.7223 -1.1600 3.9686 13 6 3.2213 -1.9833 5.0247 14 6 4.5116 -1.4046 5.5457 15 1 4.9108 -0.4990 5.1133 16 6 5.1824 -2.0313 6.5744 17 7 4.6961 -3.1337 7.1013 18 14 6.7821 -1.3144 7.2198 19 1 7.1114 -0.0792 6.4643 20 1 6.6324 -0.9877 8.6607 21 1 7.8739 -2.3062 7.0480 22 1 -0.3633 0.5192 0.8868 23 1 -0.3633 0.5083 -0.8931 24 1 -0.3633 -1.0277 0.0062 25 1 3.8169 0.4776 -1.4470 26 1 3.3389 -0.3819 -2.9303 27 1 2.4127 1.0378 -2.3866 28 1 2.6904 -2.8400 -1.2715 29 1 3.9234 -1.7094 -0.6270 30 1 2.9872 -2.6111 1.4058 31 1 1.3338 -2.6727 0.7132 32 1 0.9999 0.3453 2.6781 33 1 0.0782 -0.9721 1.9147 34 1 0.7268 -1.6541 4.1747 35 1 1.6380 -2.6217 2.9908 36 1 2.4893 -2.0228 5.8314 37 1 3.4006 -2.9899 4.6470 38 1 5.1678 -3.5745 7.8253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385295145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:01 Heat of formation + Delta-G solvation = -73.359984 kcal Electronic energy + Delta-G solvation = -16265.179837 eV Core-core repulsion = 13720.429503 eV Total energy + Delta-G solvation = -2544.750334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74228 -38.42001 -35.16100 -34.42189 -32.17545 -30.68662 -29.04167 -27.76870 -24.89013 -24.46819 -23.93170 -21.17337 -20.38974 -18.61597 -17.63360 -17.16778 -16.69379 -16.45160 -15.95773 -15.36357 -14.83315 -14.73031 -14.27327 -14.02182 -13.83537 -13.57460 -13.32907 -12.98739 -12.80957 -12.71468 -12.63292 -12.40289 -12.14812 -12.13182 -11.66424 -11.59354 -11.46056 -11.34707 -11.24346 -10.86378 -10.20227 -9.17154 -8.32641 -6.44752 1.39074 1.40820 1.55942 2.34938 3.00868 3.03707 3.25249 3.63340 3.78576 3.93504 4.19813 4.24201 4.28482 4.40452 4.46718 4.52328 4.56991 4.61215 4.67336 4.75709 4.81889 4.87705 4.97090 5.01324 5.10660 5.17135 5.17689 5.20464 5.28888 5.30215 5.51714 5.55036 5.96416 6.09096 6.20267 6.55851 6.84902 7.27619 8.80107 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037434 B = 0.005452 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.796655 B = 5134.182344 C = 5451.025368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.059 3.941 3 H 0.078 0.922 4 C -0.092 4.092 5 H 0.092 0.908 6 C -0.138 4.138 7 C -0.116 4.116 8 C 0.034 3.966 9 N -0.528 5.528 10 C 0.056 3.944 11 C 0.052 3.948 12 O -0.396 6.396 13 C 0.209 3.791 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.269 1.269 21 H -0.270 1.270 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.038 0.962 36 H -0.016 1.016 37 H -0.018 1.018 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 4.006 -17.278 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.049 4.049 3 H 0.096 0.904 4 C -0.111 4.111 5 H 0.110 0.890 6 C -0.195 4.195 7 C -0.154 4.154 8 C -0.094 4.094 9 N -0.252 5.252 10 C -0.072 4.072 11 C -0.025 4.025 12 O -0.316 6.316 13 C 0.134 3.866 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.195 1.195 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.001 0.999 37 H -0.001 1.001 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.528 4.289 -16.999 19.080 hybrid contribution -0.206 -0.670 0.689 0.983 sum -7.735 3.619 -16.310 18.411 Atomic orbital electron populations 1.22378 0.95390 1.02082 1.03096 1.22677 0.94264 0.98598 0.89398 0.90382 1.22066 0.98546 0.95135 0.95336 0.89000 1.21794 0.98974 0.99341 0.99433 1.22566 0.99797 0.98875 0.94176 1.23154 0.99345 0.90229 0.96644 1.64869 1.42286 1.11673 1.06389 1.22372 0.94395 0.99887 0.90528 1.22696 0.87093 0.97292 0.95408 1.87920 1.38984 1.52274 1.52375 1.19796 0.93353 0.89300 0.84164 1.21398 1.07287 1.11148 1.18495 0.92348 1.25961 1.02218 0.95077 0.95903 1.70073 1.41329 1.19310 1.26370 0.85131 0.77494 0.78552 0.78186 1.19007 1.19444 1.19512 0.92131 0.90260 0.92476 0.93777 0.91552 0.91598 0.89425 0.91895 0.93047 0.93104 0.90711 0.90133 0.93598 0.94371 0.99859 1.00062 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 7.62 71.98 0.55 -2.59 16 2 C 0.06 1.38 3.42 45.06 0.15 1.53 16 3 H 0.08 1.93 7.68 -2.39 -0.02 1.91 16 4 C -0.09 -1.80 3.23 -9.91 -0.03 -1.84 16 5 H 0.09 1.47 7.69 -2.39 -0.02 1.45 16 6 C -0.14 -2.42 8.90 71.98 0.64 -1.78 16 7 C -0.12 -2.71 6.61 31.80 0.21 -2.50 16 8 C 0.03 1.00 5.07 86.65 0.44 1.44 16 9 N -0.53 -16.69 5.33 -858.09 -4.58 -21.27 16 10 C 0.06 1.76 4.38 86.30 0.38 2.14 16 11 C 0.05 2.07 5.76 71.98 0.41 2.49 16 12 O -0.40 -20.68 10.27 -148.98 -1.53 -22.21 16 13 C 0.21 12.35 5.69 71.24 0.41 12.75 16 14 C -0.55 -33.96 9.43 25.60 0.24 -33.72 16 15 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 18 Si 0.98 45.72 29.54 68.60 2.03 47.75 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H 0.06 1.15 6.72 -2.39 -0.02 1.13 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.02 7.64 -2.39 -0.02 1.01 16 25 H 0.04 0.93 8.11 -2.39 -0.02 0.91 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 30 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 31 H 0.05 1.33 8.01 -2.39 -0.02 1.31 16 32 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 33 H 0.08 2.01 5.66 -2.39 -0.01 1.99 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.49 6.52 -2.39 -0.02 1.47 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.42 299.99 1.06 -68.36 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.00 Total: 5.66 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 3.86 Total: -21.22 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -4.29 Total: -78.34 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -1.53 Total: -22.21 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.42 1.06 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385295145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.999 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds