Wall clock time and date at job start Sun Mar 29 2020 22:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.53705 * 2 1 4 4 C 1.53123 * 109.50474 * 239.90243 * 2 1 3 5 5 C 1.53122 * 109.16080 * 182.40241 * 4 2 1 6 6 C 1.53038 * 109.27581 * 57.65297 * 5 4 2 7 7 N 1.46845 * 109.52668 * 300.82050 * 6 5 4 8 8 C 1.46898 * 110.99908 * 185.84330 * 7 6 5 9 9 C 1.52999 * 109.47461 * 52.14061 * 8 7 6 10 10 O 1.42903 * 109.47002 * 62.29324 * 9 8 7 11 11 C 1.42897 * 114.00033 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47058 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99903 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99781 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47435 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47194 * 120.00317 * 16 14 12 19 19 H 1.48501 * 109.47031 * 240.00045 * 16 14 12 20 20 C 1.46842 * 111.19788 * 61.74408 * 7 6 5 21 21 H 1.09000 * 109.47277 * 180.09778 * 1 2 3 22 22 H 1.09007 * 109.47254 * 300.09586 * 1 2 3 23 23 H 1.09004 * 109.47430 * 60.09838 * 1 2 3 24 24 H 1.08997 * 109.52055 * 302.30715 * 4 2 1 25 25 H 1.09000 * 109.51625 * 62.50136 * 4 2 1 26 26 H 1.08997 * 109.50102 * 177.59768 * 5 4 2 27 27 H 1.09001 * 109.50000 * 297.71604 * 5 4 2 28 28 H 1.09002 * 109.45566 * 180.80030 * 6 5 4 29 29 H 1.09003 * 109.45313 * 60.83767 * 6 5 4 30 30 H 1.08995 * 109.46843 * 172.14408 * 8 7 6 31 31 H 1.09002 * 109.46905 * 292.14296 * 8 7 6 32 32 H 1.09000 * 109.47247 * 182.29377 * 9 8 7 33 33 H 1.08997 * 109.46886 * 302.29539 * 9 8 7 34 34 H 1.08992 * 109.47283 * 300.00713 * 11 10 9 35 35 H 1.09002 * 109.46662 * 60.00503 * 11 10 9 36 36 H 0.97008 * 119.99945 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46567 * 178.24237 * 20 7 6 38 38 H 1.08999 * 109.45830 * 58.26917 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5712 -0.7719 -1.2108 6 6 4.0229 -1.4729 0.0724 7 7 3.5092 -0.7420 1.2379 8 6 4.0373 -1.3058 2.4874 9 6 5.5625 -1.3928 2.4032 10 8 6.1072 -0.0797 2.2578 11 6 7.5331 -0.0485 2.1700 12 6 7.9960 1.3778 2.0204 13 1 7.2736 2.1802 1.9952 14 6 9.3419 1.6584 1.9155 15 7 10.2216 0.6812 1.9456 16 14 9.9158 3.4264 1.7307 17 1 8.7382 4.3311 1.7253 18 1 10.8054 3.7793 2.8661 19 1 10.6601 3.5744 0.4542 20 6 2.0409 -0.7234 1.2481 21 1 -0.3634 -1.0276 0.0018 22 1 -0.3634 0.5154 0.8892 23 1 -0.3634 0.5123 -0.8909 24 1 1.6452 -1.7391 -1.2690 25 1 1.7156 -0.1869 -2.1398 26 1 3.9395 -1.3233 -2.0758 27 1 3.9677 0.2433 -1.2298 28 1 5.1120 -1.4961 0.1093 29 1 3.6374 -2.4924 0.0841 30 1 3.7554 -0.6648 3.3227 31 1 3.6243 -2.3030 2.6391 32 1 5.9512 -1.8487 3.3138 33 1 5.8447 -2.0006 1.5436 34 1 7.9624 -0.4763 3.0759 35 1 7.8567 -0.6285 1.3057 36 1 11.1685 0.8785 1.8714 37 1 1.6904 -0.2023 2.1390 38 1 1.6649 -1.7465 1.2543 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385357766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:40 Heat of formation + Delta-G solvation = -62.086486 kcal Electronic energy + Delta-G solvation = -16220.331447 eV Core-core repulsion = 13676.069968 eV Total energy + Delta-G solvation = -2544.261479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.14592 -36.63429 -34.21586 -32.58660 -31.80311 -29.02878 -26.78615 -26.41377 -23.79981 -22.37841 -22.21663 -20.33456 -19.52653 -16.34759 -16.12557 -15.55128 -15.18967 -14.48177 -14.23405 -14.11235 -14.00066 -13.92643 -13.05952 -12.70977 -12.50895 -12.10185 -12.04742 -11.82649 -11.47739 -11.12168 -10.89898 -10.75703 -10.73696 -10.62218 -10.49446 -10.13586 -10.11212 -9.81230 -9.01728 -8.74356 -8.09109 -7.94651 -6.05780 -4.06347 3.32827 3.39138 3.46519 4.09067 4.40373 4.76315 4.86508 4.90355 5.06073 5.23052 5.30916 5.42328 5.50645 5.55224 5.55832 5.62045 5.67921 5.76263 5.80526 5.84963 5.95557 6.05828 6.11629 6.13243 6.17870 6.29785 6.36451 6.41437 6.55824 7.15915 7.38743 7.41508 7.49080 7.86842 8.22696 8.67670 9.09046 9.58459 11.06020 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.005534 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.882512 B = 5057.970862 C = 5340.764943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.053 3.947 7 N -0.524 5.524 8 C 0.062 3.938 9 C 0.061 3.939 10 O -0.378 6.378 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.063 3.937 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.437 -5.182 -3.804 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.075 4.075 7 N -0.248 5.248 8 C -0.065 4.065 9 C -0.017 4.017 10 O -0.297 6.297 11 C 0.119 3.881 12 C -0.547 4.547 13 H 0.086 0.914 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.066 4.066 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.187 -4.563 -3.847 17.252 hybrid contribution 0.410 -0.337 0.025 0.531 sum -15.777 -4.900 -3.822 16.957 Atomic orbital electron populations 1.21791 0.95378 1.01414 1.01654 1.21173 0.94581 1.00784 0.94462 0.90086 1.21636 0.96104 0.99888 0.97486 1.21577 0.95147 1.02242 0.96553 1.22166 1.01240 0.93814 0.90273 1.61775 1.06619 1.54440 1.01970 1.22120 0.94612 0.97156 0.92631 1.22350 0.92276 0.88308 0.98796 1.87973 1.24032 1.23574 1.94139 1.20184 0.75079 0.97871 0.95002 1.21107 0.91842 0.92262 1.49464 0.91449 1.24946 0.96280 0.98014 0.95340 1.69978 1.01710 1.31509 1.50849 0.86302 0.78670 0.84057 0.77608 1.19445 1.20923 1.20901 1.22109 0.87982 0.98172 0.98295 0.93077 0.92671 0.92640 0.92725 0.92129 0.91869 0.90592 0.89597 0.95938 0.90150 0.94718 0.94309 0.94415 0.98033 0.97994 0.92823 0.91065 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 37.15 0.34 -1.00 16 2 C -0.09 -1.07 2.88 -90.54 -0.26 -1.33 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.11 -1.29 5.29 -26.60 -0.14 -1.43 16 5 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 6 C 0.05 0.80 5.04 -3.83 -0.02 0.78 16 7 N -0.52 -8.40 4.67 -234.67 -1.10 -9.50 16 8 C 0.06 1.00 5.52 -3.83 -0.02 0.97 16 9 C 0.06 1.16 5.57 37.16 0.21 1.37 16 10 O -0.38 -9.40 10.23 -35.23 -0.36 -9.76 16 11 C 0.19 5.42 5.69 36.00 0.20 5.63 16 12 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16 13 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 16 Si 0.91 22.25 29.54 -169.99 -5.02 17.22 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.06 0.81 4.75 -3.83 -0.02 0.79 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.49 5.79 -51.93 -0.30 1.19 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.70 6.05 -51.93 -0.31 0.39 16 34 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 37 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -31.50 302.18 -8.40 -39.91 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -6.92 Total: -5.70 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.29 Total: -10.08 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.36 Total: -36.14 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.36 Total: -9.76 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.50 -8.40 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385357766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds