Wall clock time and date at job start Sun Mar 29 2020 22:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.53705 * 2 1 4 4 C 1.53123 * 109.50474 * 239.90243 * 2 1 3 5 5 C 1.53122 * 109.16080 * 182.40241 * 4 2 1 6 6 C 1.53038 * 109.27581 * 57.65297 * 5 4 2 7 7 N 1.46845 * 109.52668 * 300.82050 * 6 5 4 8 8 C 1.46898 * 110.99908 * 185.84330 * 7 6 5 9 9 C 1.52999 * 109.47461 * 52.14061 * 8 7 6 10 10 O 1.42903 * 109.47002 * 62.29324 * 9 8 7 11 11 C 1.42897 * 114.00033 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47058 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99903 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99781 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47435 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47194 * 120.00317 * 16 14 12 19 19 H 1.48501 * 109.47031 * 240.00045 * 16 14 12 20 20 C 1.46842 * 111.19788 * 61.74408 * 7 6 5 21 21 H 1.09000 * 109.47277 * 180.09778 * 1 2 3 22 22 H 1.09007 * 109.47254 * 300.09586 * 1 2 3 23 23 H 1.09004 * 109.47430 * 60.09838 * 1 2 3 24 24 H 1.08997 * 109.52055 * 302.30715 * 4 2 1 25 25 H 1.09000 * 109.51625 * 62.50136 * 4 2 1 26 26 H 1.08997 * 109.50102 * 177.59768 * 5 4 2 27 27 H 1.09001 * 109.50000 * 297.71604 * 5 4 2 28 28 H 1.09002 * 109.45566 * 180.80030 * 6 5 4 29 29 H 1.09003 * 109.45313 * 60.83767 * 6 5 4 30 30 H 1.08995 * 109.46843 * 172.14408 * 8 7 6 31 31 H 1.09002 * 109.46905 * 292.14296 * 8 7 6 32 32 H 1.09000 * 109.47247 * 182.29377 * 9 8 7 33 33 H 1.08997 * 109.46886 * 302.29539 * 9 8 7 34 34 H 1.08992 * 109.47283 * 300.00713 * 11 10 9 35 35 H 1.09002 * 109.46662 * 60.00503 * 11 10 9 36 36 H 0.97008 * 119.99945 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46567 * 178.24237 * 20 7 6 38 38 H 1.08999 * 109.45830 * 58.26917 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5712 -0.7719 -1.2108 6 6 4.0229 -1.4729 0.0724 7 7 3.5092 -0.7420 1.2379 8 6 4.0373 -1.3058 2.4874 9 6 5.5625 -1.3928 2.4032 10 8 6.1072 -0.0797 2.2578 11 6 7.5331 -0.0485 2.1700 12 6 7.9960 1.3778 2.0204 13 1 7.2736 2.1802 1.9952 14 6 9.3419 1.6584 1.9155 15 7 10.2216 0.6812 1.9456 16 14 9.9158 3.4264 1.7307 17 1 8.7382 4.3311 1.7253 18 1 10.8054 3.7793 2.8661 19 1 10.6601 3.5744 0.4542 20 6 2.0409 -0.7234 1.2481 21 1 -0.3634 -1.0276 0.0018 22 1 -0.3634 0.5154 0.8892 23 1 -0.3634 0.5123 -0.8909 24 1 1.6452 -1.7391 -1.2690 25 1 1.7156 -0.1869 -2.1398 26 1 3.9395 -1.3233 -2.0758 27 1 3.9677 0.2433 -1.2298 28 1 5.1120 -1.4961 0.1093 29 1 3.6374 -2.4924 0.0841 30 1 3.7554 -0.6648 3.3227 31 1 3.6243 -2.3030 2.6391 32 1 5.9512 -1.8487 3.3138 33 1 5.8447 -2.0006 1.5436 34 1 7.9624 -0.4763 3.0759 35 1 7.8567 -0.6285 1.3057 36 1 11.1685 0.8785 1.8714 37 1 1.6904 -0.2023 2.1390 38 1 1.6649 -1.7465 1.2543 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385357766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:40 Heat of formation + Delta-G solvation = -82.863588 kcal Electronic energy + Delta-G solvation = -16221.232409 eV Core-core repulsion = 13676.069968 eV Total energy + Delta-G solvation = -2545.162441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29820 -38.40963 -35.53752 -34.71960 -32.84342 -30.60569 -28.78992 -27.37712 -25.06846 -24.43908 -23.45607 -21.58260 -20.54913 -18.61037 -17.52783 -17.35787 -16.50275 -16.19659 -15.73054 -15.36181 -15.26928 -15.08424 -14.72135 -13.91714 -13.73245 -13.66081 -13.31808 -12.98456 -12.81092 -12.73992 -12.71602 -12.37465 -12.26329 -11.92989 -11.87968 -11.49939 -11.26890 -11.11981 -11.08408 -10.84059 -10.17705 -9.11725 -8.31978 -6.43761 1.39474 1.41037 1.56124 2.35300 2.93177 3.01699 3.24687 3.82348 3.92434 3.98238 4.11565 4.23269 4.30139 4.41675 4.44652 4.59886 4.60574 4.67465 4.75297 4.81484 4.84755 4.87918 4.94020 4.99489 5.04346 5.13660 5.18432 5.26563 5.33507 5.41147 5.55533 5.56729 5.97486 6.18769 6.29707 6.56899 6.86057 7.28542 8.80731 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.005534 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.882512 B = 5057.970862 C = 5340.764943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.058 0.942 4 C -0.107 4.107 5 C -0.117 4.117 6 C 0.054 3.946 7 N -0.552 5.552 8 C 0.070 3.930 9 C 0.051 3.949 10 O -0.393 6.393 11 C 0.209 3.791 12 C -0.544 4.544 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.270 1.270 20 C 0.063 3.937 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.041 0.959 34 H -0.016 1.016 35 H -0.018 1.018 36 H 0.271 0.729 37 H 0.073 0.927 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.779 -4.934 -4.206 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.073 4.073 7 N -0.277 5.277 8 C -0.058 4.058 9 C -0.026 4.026 10 O -0.313 6.313 11 C 0.134 3.866 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.805 3.195 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.196 1.196 20 C -0.064 4.064 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.001 0.999 35 H -0.001 1.001 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.550 -4.334 -4.245 18.569 hybrid contribution 0.809 -0.497 0.159 0.963 sum -16.741 -4.831 -4.087 17.897 Atomic orbital electron populations 1.21729 0.93102 1.02346 1.02342 1.21174 0.96394 0.99353 0.94117 0.92300 1.21605 0.94074 1.00903 0.97884 1.21574 0.97060 1.00593 0.96285 1.22101 0.99357 0.94997 0.90884 1.61750 1.08768 1.55240 1.01984 1.22048 0.91873 0.98966 0.92863 1.22691 0.94639 0.85949 0.99297 1.87926 1.21988 1.27164 1.94212 1.19791 0.76932 0.96807 0.93071 1.21392 0.92652 0.92862 1.51296 0.92341 1.25948 0.95959 1.03199 0.94029 1.70078 1.02390 1.34057 1.50562 0.85144 0.78276 0.77694 0.78339 1.18998 1.19496 1.19559 1.22180 0.85921 0.99237 0.99082 0.91956 0.92310 0.91732 0.91233 0.90827 0.90535 0.93304 0.92828 0.94127 0.90301 0.91495 0.93481 0.94082 0.99873 1.00054 0.92059 0.90847 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.20 71.98 0.66 -1.51 16 2 C -0.09 -1.99 2.88 -10.74 -0.03 -2.02 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.11 -2.22 5.29 30.68 0.16 -2.06 16 5 C -0.12 -3.11 6.09 30.65 0.19 -2.92 16 6 C 0.05 1.63 5.04 86.33 0.44 2.07 16 7 N -0.55 -17.41 4.67 -896.37 -4.18 -21.59 16 8 C 0.07 2.17 5.52 86.30 0.48 2.65 16 9 C 0.05 2.00 5.57 71.98 0.40 2.41 16 10 O -0.39 -20.25 10.23 -148.98 -1.52 -21.78 16 11 C 0.21 12.24 5.69 71.23 0.41 12.65 16 12 C -0.54 -33.65 9.43 25.60 0.24 -33.41 16 13 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 14 C 0.01 0.41 5.46 84.66 0.46 0.87 16 15 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 16 Si 0.98 45.55 29.54 68.60 2.03 47.58 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.06 1.52 4.75 86.33 0.41 1.93 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.93 5.79 -2.39 -0.01 1.92 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.58 6.05 -2.39 -0.01 1.56 16 34 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H -0.02 -1.12 8.14 -2.39 -0.02 -1.13 16 36 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 37 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 38 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.37 302.18 1.40 -66.97 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 0.99 Total: 5.03 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 3.81 Total: -19.35 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -3.90 Total: -78.45 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.52 Total: -21.78 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -68.37 1.40 -66.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385357766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.896 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds