Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46852 * 2 1 4 4 H 1.09002 * 110.27643 * 54.29992 * 3 2 1 5 5 C 1.54598 * 110.39179 * 292.15003 * 3 2 1 6 6 C 1.54932 * 102.92273 * 219.08302 * 5 3 2 7 7 N 1.48539 * 103.22489 * 37.41993 * 6 5 3 8 8 C 1.46900 * 110.99796 * 200.27757 * 7 6 5 9 9 C 1.53005 * 109.47005 * 287.39483 * 8 7 6 10 10 O 1.42893 * 109.47144 * 65.00315 * 9 8 7 11 11 C 1.42901 * 114.00044 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47321 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00233 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99830 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00429 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99772 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47180 * 59.99524 * 16 14 12 18 18 H 1.48499 * 109.47056 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47030 * 299.99647 * 16 14 12 20 20 C 1.47897 * 105.81843 * 320.78612 * 7 6 5 21 21 H 1.08993 * 109.47147 * 60.00341 * 1 2 3 22 22 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47107 * 300.00082 * 1 2 3 24 24 H 1.08993 * 109.47061 * 239.99955 * 2 1 3 25 25 H 1.09001 * 109.46983 * 119.99905 * 2 1 3 26 26 H 1.08994 * 110.72376 * 337.44853 * 5 3 2 27 27 H 1.09002 * 110.71797 * 100.72760 * 5 3 2 28 28 H 1.08999 * 110.67033 * 278.98382 * 6 5 3 29 29 H 1.09005 * 110.81115 * 155.91631 * 6 5 3 30 30 H 1.09002 * 109.47432 * 47.39063 * 8 7 6 31 31 H 1.08997 * 109.47479 * 167.39388 * 8 7 6 32 32 H 1.09002 * 109.46781 * 184.99905 * 9 8 7 33 33 H 1.09002 * 109.47050 * 304.99896 * 9 8 7 34 34 H 1.08994 * 109.47343 * 299.99853 * 11 10 9 35 35 H 1.09004 * 109.46979 * 60.00069 * 11 10 9 36 36 H 0.96998 * 120.00133 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.92227 * 265.97847 * 20 7 6 38 38 H 1.08999 * 109.91658 * 144.68234 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9975 0.8303 5 6 1.7044 2.1325 -1.3422 6 6 2.9719 2.9778 -1.6236 7 7 4.0752 2.1053 -1.1462 8 6 5.2892 2.8889 -0.8818 9 6 5.9131 3.3262 -2.2087 10 8 5.0246 4.2209 -2.8809 11 6 5.5151 4.6920 -4.1377 12 6 4.5031 5.6224 -4.7551 13 1 3.5777 5.8327 -4.2395 14 6 4.7581 6.2044 -5.9787 15 7 5.8847 5.9480 -6.6068 16 14 3.5039 7.3584 -6.7436 17 1 3.2762 8.5127 -5.8377 18 1 4.0136 7.8477 -8.0497 19 1 2.2252 6.6322 -6.9513 20 6 3.5771 1.4660 0.0910 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.5514 1.3931 -2.1282 27 1 0.8288 2.7732 -1.2380 28 1 2.9463 3.9095 -1.0585 29 1 3.0745 3.1788 -2.6901 30 1 5.0322 3.7699 -0.2935 31 1 6.0027 2.2782 -0.3286 32 1 6.8599 3.8308 -2.0162 33 1 6.0886 2.4505 -2.8337 34 1 6.4534 5.2250 -3.9849 35 1 5.6825 3.8449 -4.8029 36 1 6.0639 6.3572 -7.4678 37 1 3.8888 2.0455 0.9599 38 1 3.9603 0.4482 0.1632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = -63.065393 kcal Electronic energy + Delta-G solvation = -16102.923531 eV Core-core repulsion = 13558.619604 eV Total energy + Delta-G solvation = -2544.303927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.06205 -36.64311 -34.32216 -32.66819 -30.84618 -28.69050 -27.66675 -26.44240 -22.85622 -22.46246 -21.87422 -20.44649 -19.83779 -16.41072 -15.97112 -15.58969 -15.41466 -14.50563 -14.34668 -14.19334 -13.74926 -13.40654 -13.09360 -12.83814 -12.25295 -12.10426 -11.96426 -11.53060 -11.26343 -11.11542 -11.04960 -10.79660 -10.70145 -10.62600 -10.38985 -10.37428 -10.30524 -9.91047 -9.07274 -8.76282 -8.12963 -8.04869 -6.08202 -4.09873 3.33221 3.36056 3.39654 4.32142 4.36969 4.66441 4.79761 4.88150 4.99393 5.25336 5.28203 5.35888 5.44613 5.52541 5.59422 5.69513 5.74882 5.80882 5.88657 5.93145 6.06676 6.08466 6.13244 6.19763 6.22022 6.31104 6.40942 6.50608 6.78204 7.16378 7.27834 7.39397 7.48859 7.81381 8.19098 8.62814 9.03461 9.54892 11.03338 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.005596 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.021043 B = 5002.116120 C = 5671.055192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.099 4.099 4 H 0.069 0.931 5 C -0.121 4.121 6 C 0.046 3.954 7 N -0.513 5.513 8 C 0.052 3.948 9 C 0.067 3.933 10 O -0.393 6.393 11 C 0.195 3.805 12 C -0.513 4.513 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.037 3.963 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.002 0.998 35 H 0.005 0.995 36 H 0.264 0.736 37 H 0.037 0.963 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 -9.668 13.085 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.118 4.118 4 H 0.087 0.913 5 C -0.159 4.159 6 C -0.081 4.081 7 N -0.238 5.238 8 C -0.077 4.077 9 C -0.011 4.011 10 O -0.313 6.313 11 C 0.121 3.879 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.734 3.266 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.091 4.091 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.221 -9.947 12.598 17.215 hybrid contribution -0.338 1.196 0.054 1.244 sum -6.559 -8.751 12.652 16.724 Atomic orbital electron populations 1.21784 0.96066 1.01244 1.01859 1.21571 0.95632 0.95880 1.01913 1.22049 0.94964 0.96418 0.98398 0.91270 1.22639 0.97881 0.99030 0.96377 1.23296 0.88174 0.93251 1.03378 1.64777 1.04234 1.29103 1.25642 1.22298 0.92866 0.95796 0.96692 1.22227 0.92545 0.93437 0.92891 1.87850 1.44043 1.62874 1.36509 1.20158 0.94973 0.93501 0.79248 1.21005 1.04112 1.26484 1.03536 0.91722 1.24937 0.95862 0.96948 0.96691 1.69953 1.23856 1.44240 1.15746 0.86425 0.81187 0.80819 0.78205 1.20093 1.21180 1.20014 1.22937 0.94324 0.99835 0.91994 0.92431 0.93065 0.93077 0.91496 0.92398 0.90886 0.91587 0.94012 0.87724 0.94274 0.90608 0.94360 0.93665 0.97980 0.97721 0.92642 0.94446 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.77 37.16 0.36 -1.01 16 2 C -0.11 -1.12 5.09 -26.73 -0.14 -1.26 16 3 C -0.10 -1.16 3.01 -89.26 -0.27 -1.43 16 4 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -1.64 5.81 -24.87 -0.14 -1.79 16 6 C 0.05 0.79 5.33 -1.90 -0.01 0.78 16 7 N -0.51 -8.25 5.24 -230.45 -1.21 -9.46 16 8 C 0.05 0.83 5.27 -3.82 -0.02 0.81 16 9 C 0.07 1.29 6.25 37.16 0.23 1.52 16 10 O -0.39 -9.42 7.69 -35.23 -0.27 -9.69 16 11 C 0.20 5.41 5.69 36.00 0.20 5.61 16 12 C -0.51 -15.11 9.43 -34.44 -0.32 -15.43 16 13 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.04 0.48 6.32 -2.75 -0.02 0.46 16 21 H 0.06 0.54 7.53 -51.93 -0.39 0.15 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.72 8.03 -51.93 -0.42 0.31 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.74 7.81 -51.93 -0.41 0.33 16 29 H 0.10 2.14 6.79 -51.93 -0.35 1.79 16 30 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 31 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.04 0.46 7.77 -51.93 -0.40 0.05 16 38 H 0.07 0.88 7.68 -51.93 -0.40 0.49 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -30.41 303.24 -8.36 -38.77 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.95 Total: -4.54 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.22 Total: -10.17 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.47 Total: -35.84 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.27 Total: -9.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.41 -8.36 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.298 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds